Protein–RNA interactions for Protein: O88207

Col5a1, Collagen alpha-1(V) chain, mousemouse

Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col5a1O88207 Cap2-201ENSMUST00000021802 3713 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Col5a1O88207 Cul3-201ENSMUST00000163119 4709 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Col5a1O88207 Gm13384-201ENSMUST00000117166 1344 ntBASIC11.09□□□□□ -0.63
Col5a1O88207 Adh4-201ENSMUST00000013458 1314 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Col5a1O88207 Hdgfl2-212ENSMUST00000226053 2270 ntAPPRIS P2 BASIC11.09□□□□□ -0.63
Col5a1O88207 Psmd5-201ENSMUST00000028225 4397 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Col5a1O88207 Cntfr-204ENSMUST00000102962 1926 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Col5a1O88207 Olfr1372-ps1-202ENSMUST00000203403 9812 ntTSL 5 BASIC11.09□□□□□ -0.63
Col5a1O88207 Sema4b-204ENSMUST00000205822 3760 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Col5a1O88207 Gm8038-201ENSMUST00000164674 2044 ntBASIC11.09□□□□□ -0.63
Col5a1O88207 Serpinb12-202ENSMUST00000112724 1623 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Col5a1O88207 Slc10a1-203ENSMUST00000218342 1411 ntAPPRIS ALT2 TSL 1 (best) BASIC11.09□□□□□ -0.63
Col5a1O88207 Cacna2d2-204ENSMUST00000166799 3474 ntAPPRIS ALT2 TSL 5 BASIC11.09□□□□□ -0.63
Col5a1O88207 Sema7a-201ENSMUST00000043059 3297 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Col5a1O88207 Adcy3-207ENSMUST00000152065 4728 ntAPPRIS ALT1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Col5a1O88207 Gins2-201ENSMUST00000034278 3900 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Col5a1O88207 Mettl8-202ENSMUST00000100037 2254 ntAPPRIS ALT2 TSL 1 (best) BASIC11.09□□□□□ -0.63
Col5a1O88207 Gm9129-201ENSMUST00000218173 1689 ntBASIC11.09□□□□□ -0.63
Col5a1O88207 Nrsn2-201ENSMUST00000079278 1455 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Col5a1O88207 Gm26286-201ENSMUST00000104166 134 ntBASIC11.09□□□□□ -0.63
Col5a1O88207 Gm15595-201ENSMUST00000120840 961 ntBASIC11.09□□□□□ -0.63
Col5a1O88207 Gm13182-201ENSMUST00000122241 312 ntBASIC11.09□□□□□ -0.63
Col5a1O88207 Gm16312-201ENSMUST00000156285 362 ntTSL 3 BASIC11.09□□□□□ -0.63
Col5a1O88207 Gm15523-201ENSMUST00000160463 439 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
Col5a1O88207 Rpl31-202ENSMUST00000178079 487 ntAPPRIS P1 TSL 2 BASIC11.09□□□□□ -0.63
Col5a1O88207 Gm3332-201ENSMUST00000189337 928 ntBASIC11.09□□□□□ -0.63
Col5a1O88207 Gm38228-201ENSMUST00000193169 1293 ntBASIC11.09□□□□□ -0.63
Col5a1O88207 Gm44329-201ENSMUST00000197469 112 ntBASIC11.09□□□□□ -0.63
Col5a1O88207 Gm3619-201ENSMUST00000219947 775 ntBASIC11.09□□□□□ -0.63
Col5a1O88207 Cmbl-201ENSMUST00000070918 1155 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Col5a1O88207 Adcyap1r1-203ENSMUST00000165786 1745 ntAPPRIS ALT2 TSL 5 BASIC11.09□□□□□ -0.63
Col5a1O88207 Gm9072-201ENSMUST00000218390 1514 ntBASIC11.09□□□□□ -0.63
Col5a1O88207 Aifm3-201ENSMUST00000023448 2688 ntAPPRIS P3 TSL 1 (best) BASIC11.09□□□□□ -0.63
Col5a1O88207 Ddx19b-202ENSMUST00000065784 3104 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
Col5a1O88207 2900089D17Rik-201ENSMUST00000124015 2475 ntTSL 1 (best) BASIC11.08□□□□□ -0.63
Col5a1O88207 Gm5847-201ENSMUST00000178959 1595 ntBASIC11.08□□□□□ -0.63
Col5a1O88207 Ptbp2-201ENSMUST00000029780 3364 ntAPPRIS P3 TSL 1 (best) BASIC11.08□□□□□ -0.63
Col5a1O88207 Tspan32-201ENSMUST00000009396 1582 ntAPPRIS ALT2 TSL 1 (best) BASIC11.08□□□□□ -0.63
Col5a1O88207 Aaas-201ENSMUST00000041208 1816 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Col5a1O88207 Ebna1bp2-201ENSMUST00000030501 2960 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Col5a1O88207 Bckdhb-205ENSMUST00000190166 1398 ntAPPRIS P3 TSL 1 (best) BASIC11.08□□□□□ -0.64
Col5a1O88207 5330439B14Rik-201ENSMUST00000194811 1392 ntTSL 1 (best) BASIC11.08□□□□□ -0.64
Col5a1O88207 Camkk2-201ENSMUST00000111668 4861 ntAPPRIS ALT2 TSL 1 (best) BASIC11.08□□□□□ -0.64
Col5a1O88207 Kars-202ENSMUST00000093120 2131 ntAPPRIS ALT2 TSL 1 (best) BASIC11.08□□□□□ -0.64
Col5a1O88207 Gm7278-201ENSMUST00000119836 1401 ntBASIC11.08□□□□□ -0.64
Col5a1O88207 Anxa11-201ENSMUST00000022416 2394 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Col5a1O88207 Plpbp-201ENSMUST00000033875 3603 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Col5a1O88207 Hapln4-201ENSMUST00000007738 3648 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Col5a1O88207 Gm18227-201ENSMUST00000211082 1468 ntBASIC11.08□□□□□ -0.64
Col5a1O88207 Nectin4-202ENSMUST00000094325 3245 ntTSL 1 (best) BASIC11.08□□□□□ -0.64
Col5a1O88207 Cacna1i-202ENSMUST00000160424 9781 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Col5a1O88207 Setdb2-201ENSMUST00000095775 3034 ntAPPRIS ALT2 TSL 5 BASIC11.08□□□□□ -0.64
Col5a1O88207 AC126257.1-201ENSMUST00000213195 1536 ntBASIC11.08□□□□□ -0.64
Col5a1O88207 Shank3-203ENSMUST00000109309 7365 ntAPPRIS ALT2 TSL 1 (best) BASIC11.08□□□□□ -0.64
Col5a1O88207 Rffl-205ENSMUST00000103218 1264 ntTSL 1 (best) BASIC11.08□□□□□ -0.64
Col5a1O88207 Klk6-201ENSMUST00000107966 1095 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Col5a1O88207 Gm16166-201ENSMUST00000118291 787 ntBASIC11.08□□□□□ -0.64
Col5a1O88207 Gm15036-201ENSMUST00000118880 400 ntBASIC11.08□□□□□ -0.64
Col5a1O88207 Gm16071-201ENSMUST00000119589 793 ntBASIC11.08□□□□□ -0.64
Col5a1O88207 Zfp229-206ENSMUST00000183192 653 ntTSL 1 (best) BASIC11.08□□□□□ -0.64
Col5a1O88207 Gm17826-201ENSMUST00000189720 798 ntBASIC11.08□□□□□ -0.64
Col5a1O88207 Dnajb6-212ENSMUST00000198694 505 ntTSL 3 BASIC11.08□□□□□ -0.64
Col5a1O88207 Gm34728-201ENSMUST00000201510 414 ntTSL 3 BASIC11.08□□□□□ -0.64
Col5a1O88207 Fcer2a-206ENSMUST00000208438 930 ntAPPRIS ALT2 TSL 1 (best) BASIC11.08□□□□□ -0.64
Col5a1O88207 Fcer2a-208ENSMUST00000208603 930 ntAPPRIS ALT2 TSL 1 (best) BASIC11.08□□□□□ -0.64
Col5a1O88207 4930578I06Rik-201ENSMUST00000022532 1033 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Col5a1O88207 Pgpep1l-201ENSMUST00000032770 953 ntTSL 1 (best) BASIC11.08□□□□□ -0.64
Col5a1O88207 Phxr2-201ENSMUST00000060761 1159 ntAPPRIS P1 BASIC11.08□□□□□ -0.64
Col5a1O88207 Gm5705-201ENSMUST00000066241 711 ntBASIC11.08□□□□□ -0.64
Col5a1O88207 Lig3-202ENSMUST00000080461 3056 ntTSL 5 BASIC11.08□□□□□ -0.64
Col5a1O88207 Trpm1-219ENSMUST00000206314 2323 ntTSL 1 (best) BASIC11.08□□□□□ -0.64
Col5a1O88207 Irak1-203ENSMUST00000101458 2052 ntAPPRIS ALT2 TSL 5 BASIC11.08□□□□□ -0.64
Col5a1O88207 Setd3-202ENSMUST00000109879 2387 ntTSL 3 BASIC11.08□□□□□ -0.64
Col5a1O88207 Adcy5-201ENSMUST00000114913 7007 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Col5a1O88207 Tcf4-205ENSMUST00000114980 2192 ntAPPRIS P1 TSL 5 BASIC11.08□□□□□ -0.64
Col5a1O88207 Dll1-201ENSMUST00000014917 3581 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Col5a1O88207 Chaf1a-201ENSMUST00000002914 3308 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Col5a1O88207 Add3-202ENSMUST00000050096 4488 ntAPPRIS ALT1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Col5a1O88207 Gm34370-201ENSMUST00000209385 1410 ntTSL 5 BASIC11.08□□□□□ -0.64
Col5a1O88207 Il12rb1-201ENSMUST00000000808 2873 ntAPPRIS P2 TSL 1 (best) BASIC11.08□□□□□ -0.64
Col5a1O88207 Uba6-202ENSMUST00000113373 3504 ntAPPRIS ALT2 TSL 1 (best) BASIC11.08□□□□□ -0.64
Col5a1O88207 Hmg20a-204ENSMUST00000214869 1782 ntTSL 1 (best) BASIC11.08□□□□□ -0.64
Col5a1O88207 Osbpl8-201ENSMUST00000095310 3622 ntAPPRIS P3 TSL 1 (best) BASIC11.07□□□□□ -0.64
Col5a1O88207 Stx18-203ENSMUST00000114126 3002 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Col5a1O88207 Sufu-204ENSMUST00000120778 1850 ntTSL 2 BASIC11.07□□□□□ -0.64
Col5a1O88207 Cdk2ap1-202ENSMUST00000111472 648 ntAPPRIS ALT1 TSL 5 BASIC11.07□□□□□ -0.64
Col5a1O88207 Gm12990-201ENSMUST00000120372 468 ntBASIC11.07□□□□□ -0.64
Col5a1O88207 Eef1akmt2-202ENSMUST00000120425 573 ntTSL 3 BASIC11.07□□□□□ -0.64
Col5a1O88207 Dnmt3bos-201ENSMUST00000124988 718 ntTSL 1 (best) BASIC11.07□□□□□ -0.64
Col5a1O88207 Gm15507-201ENSMUST00000133523 592 ntTSL 5 BASIC11.07□□□□□ -0.64
Col5a1O88207 Gm8956-201ENSMUST00000203939 825 ntBASIC11.07□□□□□ -0.64
Col5a1O88207 Gm44711-201ENSMUST00000205414 1264 ntBASIC11.07□□□□□ -0.64
Col5a1O88207 Gm44759-201ENSMUST00000206057 430 ntTSL 3 BASIC11.07□□□□□ -0.64
Col5a1O88207 AC147241.1-201ENSMUST00000222173 785 ntTSL 3 BASIC11.07□□□□□ -0.64
Col5a1O88207 Ttyh1-202ENSMUST00000079415 2882 ntTSL 1 (best) BASIC11.07□□□□□ -0.64
Col5a1O88207 Gm37437-201ENSMUST00000194451 1937 ntBASIC11.07□□□□□ -0.64
Col5a1O88207 Emilin2-201ENSMUST00000024849 3910 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Col5a1O88207 Gm42941-201ENSMUST00000200347 1321 ntBASIC11.07□□□□□ -0.64
Col5a1O88207 Notch3-201ENSMUST00000087723 8044 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Col5a1O88207 Phyhd1-212ENSMUST00000154647 1678 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Retrieved 100 of 76,532 protein–RNA pairs in 73.5 ms