Protein–RNA interactions for Protein: E9PWQ3

Col6a3, Collagen, type VI, alpha 3, mousemouse

Predictions only

Length 3,284 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col6a3E9PWQ3 Pax6-201ENSMUST00000090391 2869 ntAPPRIS P3 TSL 1 (best) BASIC12.08□□□□□ -0.48
Col6a3E9PWQ3 Pglyrp2-202ENSMUST00000170392 2068 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Col6a3E9PWQ3 Gm11475-201ENSMUST00000118482 476 ntBASIC12.08□□□□□ -0.48
Col6a3E9PWQ3 Gm26901-204ENSMUST00000193732 631 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
Col6a3E9PWQ3 Efna1-203ENSMUST00000118860 1403 ntTSL 5 BASIC12.08□□□□□ -0.48
Col6a3E9PWQ3 Dnajb12-201ENSMUST00000020309 2238 ntAPPRIS P2 TSL 1 (best) BASIC12.08□□□□□ -0.48
Col6a3E9PWQ3 Gm43045-201ENSMUST00000198725 2095 ntBASIC12.08□□□□□ -0.48
Col6a3E9PWQ3 Gm37600-201ENSMUST00000193764 3292 ntBASIC12.08□□□□□ -0.48
Col6a3E9PWQ3 Nr2e1-201ENSMUST00000019938 3285 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Col6a3E9PWQ3 Mettl8-202ENSMUST00000100037 2254 ntAPPRIS ALT2 TSL 1 (best) BASIC12.08□□□□□ -0.48
Col6a3E9PWQ3 Rpl11-201ENSMUST00000102536 833 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Col6a3E9PWQ3 Ifitm1-202ENSMUST00000106040 560 ntAPPRIS P1 TSL 3 BASIC12.08□□□□□ -0.48
Col6a3E9PWQ3 Ifitm1-203ENSMUST00000106042 882 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Col6a3E9PWQ3 Art5-203ENSMUST00000106935 495 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
Col6a3E9PWQ3 Gm5863-201ENSMUST00000121760 1008 ntBASIC12.08□□□□□ -0.48
Col6a3E9PWQ3 Gm20610-201ENSMUST00000176406 587 ntTSL 5 BASIC12.08□□□□□ -0.48
Col6a3E9PWQ3 Gm7572-201ENSMUST00000182616 766 ntBASIC12.08□□□□□ -0.48
Col6a3E9PWQ3 3930402G23Rik-202ENSMUST00000208615 581 ntTSL 3 BASIC12.08□□□□□ -0.48
Col6a3E9PWQ3 Ifitm1-201ENSMUST00000026564 736 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Col6a3E9PWQ3 Crygb-201ENSMUST00000027090 634 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Col6a3E9PWQ3 Bpifa5-201ENSMUST00000028986 1089 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Col6a3E9PWQ3 Rhcg-201ENSMUST00000032766 2090 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Col6a3E9PWQ3 Nsd3-203ENSMUST00000136107 3818 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
Col6a3E9PWQ3 9330162012Rik-201ENSMUST00000154919 3836 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
Col6a3E9PWQ3 Smim1-201ENSMUST00000125533 2568 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Col6a3E9PWQ3 Smad5-203ENSMUST00000109876 4570 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Col6a3E9PWQ3 Smok4a-201ENSMUST00000074512 1455 ntBASIC12.07□□□□□ -0.48
Col6a3E9PWQ3 Creb3l3-201ENSMUST00000117422 2294 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Col6a3E9PWQ3 Tnfrsf22-203ENSMUST00000146692 2298 ntAPPRIS P3 TSL 1 (best) BASIC12.07□□□□□ -0.48
Col6a3E9PWQ3 Dnm2-201ENSMUST00000072362 3502 ntAPPRIS ALT2 TSL 1 (best) BASIC12.07□□□□□ -0.48
Col6a3E9PWQ3 Obsl1-201ENSMUST00000113565 3379 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
Col6a3E9PWQ3 Rpl19-ps1-201ENSMUST00000121059 591 ntBASIC12.07□□□□□ -0.48
Col6a3E9PWQ3 Rplp0-ps1-201ENSMUST00000122125 933 ntBASIC12.07□□□□□ -0.48
Col6a3E9PWQ3 Gm11379-201ENSMUST00000154678 381 ntTSL 3 BASIC12.07□□□□□ -0.48
Col6a3E9PWQ3 Gm16228-201ENSMUST00000162286 809 ntBASIC12.07□□□□□ -0.48
Col6a3E9PWQ3 Gm17225-201ENSMUST00000172051 497 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
Col6a3E9PWQ3 Gm32102-201ENSMUST00000196885 241 ntBASIC12.07□□□□□ -0.48
Col6a3E9PWQ3 CT025689.1-201ENSMUST00000225214 283 ntBASIC12.07□□□□□ -0.48
Col6a3E9PWQ3 Ate1-204ENSMUST00000178534 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC12.07□□□□□ -0.48
Col6a3E9PWQ3 Gm45342-201ENSMUST00000210903 1363 ntBASIC12.07□□□□□ -0.48
Col6a3E9PWQ3 Ptpn2-202ENSMUST00000120934 1497 ntAPPRIS ALT2 TSL 5 BASIC12.07□□□□□ -0.48
Col6a3E9PWQ3 Ccndbp1-202ENSMUST00000099488 1595 ntAPPRIS ALT2 TSL 1 (best) BASIC12.07□□□□□ -0.48
Col6a3E9PWQ3 Acad12-202ENSMUST00000111776 2269 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
Col6a3E9PWQ3 Serpina11-201ENSMUST00000074693 1447 ntAPPRIS P3 TSL 1 (best) BASIC12.07□□□□□ -0.48
Col6a3E9PWQ3 Recql-201ENSMUST00000032370 2112 ntAPPRIS ALT2 TSL 1 (best) BASIC12.07□□□□□ -0.48
Col6a3E9PWQ3 Stx5a-202ENSMUST00000073430 2112 ntAPPRIS P2 TSL 1 (best) BASIC12.07□□□□□ -0.48
Col6a3E9PWQ3 Arhgap39-202ENSMUST00000077821 4494 ntAPPRIS P3 TSL 1 (best) BASIC12.07□□□□□ -0.48
Col6a3E9PWQ3 Itfg2-201ENSMUST00000001559 2320 ntAPPRIS P2 TSL 1 (best) BASIC12.07□□□□□ -0.48
Col6a3E9PWQ3 Gm23912-201ENSMUST00000104687 87 ntBASIC12.07□□□□□ -0.48
Col6a3E9PWQ3 Dctn6-202ENSMUST00000117243 962 ntTSL 3 BASIC12.07□□□□□ -0.48
Col6a3E9PWQ3 Gm11244-201ENSMUST00000121243 237 ntBASIC12.07□□□□□ -0.48
Col6a3E9PWQ3 Gm25830-201ENSMUST00000158923 132 ntBASIC12.07□□□□□ -0.48
Col6a3E9PWQ3 Mrpl20-206ENSMUST00000185148 494 ntTSL 3 BASIC12.07□□□□□ -0.48
Col6a3E9PWQ3 Gm38145-201ENSMUST00000192319 693 ntBASIC12.07□□□□□ -0.48
Col6a3E9PWQ3 Gm29918-201ENSMUST00000205635 138 ntTSL 5 BASIC12.07□□□□□ -0.48
Col6a3E9PWQ3 Olfr209-202ENSMUST00000208246 428 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
Col6a3E9PWQ3 Gm45090-201ENSMUST00000208775 1148 ntBASIC12.07□□□□□ -0.48
Col6a3E9PWQ3 Tpi-rs4-201ENSMUST00000213734 720 ntBASIC12.07□□□□□ -0.48
Col6a3E9PWQ3 Fthl17a-201ENSMUST00000048382 835 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Col6a3E9PWQ3 A530083I20Rik-201ENSMUST00000180486 2421 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
Col6a3E9PWQ3 Zeb2-211ENSMUST00000153561 2070 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
Col6a3E9PWQ3 Slc6a7-201ENSMUST00000025520 3342 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Col6a3E9PWQ3 Rnf168-201ENSMUST00000014218 3932 ntAPPRIS ALT2 TSL 1 (best) BASIC12.07□□□□□ -0.48
Col6a3E9PWQ3 Sf3a2-203ENSMUST00000148665 2213 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Col6a3E9PWQ3 Rinl-201ENSMUST00000059857 2871 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Col6a3E9PWQ3 Gm11033-201ENSMUST00000127757 1445 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
Col6a3E9PWQ3 Armc6-201ENSMUST00000019679 2263 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Col6a3E9PWQ3 P4ha1-202ENSMUST00000092512 2387 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
Col6a3E9PWQ3 4931429L15Rik-201ENSMUST00000159565 2037 ntAPPRIS P1 TSL 2 BASIC12.07□□□□□ -0.48
Col6a3E9PWQ3 Sfi1-204ENSMUST00000118627 831 ntAPPRIS ALT2 TSL 1 (best) BASIC12.06□□□□□ -0.48
Col6a3E9PWQ3 Dusp15-203ENSMUST00000123121 2993 ntAPPRIS P1 TSL 3 BASIC12.06□□□□□ -0.48
Col6a3E9PWQ3 Mir1941-201ENSMUST00000157834 83 ntBASIC12.06□□□□□ -0.48
Col6a3E9PWQ3 Gm20483-201ENSMUST00000173162 851 ntTSL 2 BASIC12.06□□□□□ -0.48
Col6a3E9PWQ3 Gm8888-201ENSMUST00000177677 381 ntAPPRIS P1 BASIC12.06□□□□□ -0.48
Col6a3E9PWQ3 Clec2h-202ENSMUST00000204416 386 ntTSL 3 BASIC12.06□□□□□ -0.48
Col6a3E9PWQ3 Gm18042-201ENSMUST00000219887 790 ntBASIC12.06□□□□□ -0.48
Col6a3E9PWQ3 Eef1akmt1-201ENSMUST00000022518 880 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Col6a3E9PWQ3 AC154213.1-201ENSMUST00000228234 583 ntBASIC12.06□□□□□ -0.48
Col6a3E9PWQ3 Gm5705-201ENSMUST00000066241 711 ntBASIC12.06□□□□□ -0.48
Col6a3E9PWQ3 Rab37-201ENSMUST00000021076 2210 ntAPPRIS P3 TSL 1 (best) BASIC12.06□□□□□ -0.48
Col6a3E9PWQ3 Tbp-203ENSMUST00000118001 1652 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
Col6a3E9PWQ3 Trp53-203ENSMUST00000108658 1771 ntAPPRIS P3 TSL 1 (best) BASIC12.06□□□□□ -0.48
Col6a3E9PWQ3 Trp53-201ENSMUST00000005371 1772 ntAPPRIS ALT2 TSL 1 (best) BASIC12.06□□□□□ -0.48
Col6a3E9PWQ3 Pax6-203ENSMUST00000111082 3116 ntAPPRIS ALT1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Col6a3E9PWQ3 Gm19299-202ENSMUST00000215724 1435 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
Col6a3E9PWQ3 Actr8-204ENSMUST00000224797 2328 ntAPPRIS P1 BASIC12.06□□□□□ -0.48
Col6a3E9PWQ3 Wnt9a-202ENSMUST00000108783 3318 ntAPPRIS P2 TSL 1 (best) BASIC12.06□□□□□ -0.48
Col6a3E9PWQ3 Bnc1-201ENSMUST00000026096 4646 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Col6a3E9PWQ3 Clcnkb-202ENSMUST00000105788 2490 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
Col6a3E9PWQ3 Ighv1-81-201ENSMUST00000103548 351 ntAPPRIS P1 BASIC12.06□□□□□ -0.48
Col6a3E9PWQ3 2300003K06Rik-201ENSMUST00000105054 1265 ntAPPRIS P1 BASIC12.06□□□□□ -0.48
Col6a3E9PWQ3 Gosr2-202ENSMUST00000107013 1044 ntTSL 2 BASIC12.06□□□□□ -0.48
Col6a3E9PWQ3 Gm11473-201ENSMUST00000118980 359 ntBASIC12.06□□□□□ -0.48
Col6a3E9PWQ3 Gm26976-201ENSMUST00000182929 908 ntBASIC12.06□□□□□ -0.48
Col6a3E9PWQ3 Gm37826-201ENSMUST00000195329 322 ntBASIC12.06□□□□□ -0.48
Col6a3E9PWQ3 4930589O11Rik-201ENSMUST00000200768 920 ntBASIC12.06□□□□□ -0.48
Col6a3E9PWQ3 AL844586.1-201ENSMUST00000224297 1042 ntBASIC12.06□□□□□ -0.48
Col6a3E9PWQ3 Prss36-202ENSMUST00000118755 3028 ntAPPRIS P2 TSL 5 BASIC12.06□□□□□ -0.48
Col6a3E9PWQ3 Ncbp1-201ENSMUST00000030014 3010 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Col6a3E9PWQ3 Rpusd2-201ENSMUST00000028796 2706 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Retrieved 100 of 76,532 protein–RNA pairs in 51.4 ms