Protein–RNA interactions for Protein: Q9R053

Scn11a, Sodium channel protein type 11 subunit alpha, mousemouse

Predictions only

Length 1,765 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn11aQ9R053 Samd11-202ENSMUST00000217934 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
Scn11aQ9R053 Aspg-201ENSMUST00000079400 2722 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Scn11aQ9R053 Gm13003-201ENSMUST00000151040 2904 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
Scn11aQ9R053 Nt5e-201ENSMUST00000034992 3995 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Scn11aQ9R053 Glud1-201ENSMUST00000022322 3390 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Scn11aQ9R053 Gm26732-201ENSMUST00000181807 2771 ntTSL 5 BASIC14.56□□□□□ -0.08
Scn11aQ9R053 3200001D21Rik-201ENSMUST00000221603 2283 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
Scn11aQ9R053 Msra-201ENSMUST00000067927 1860 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Scn11aQ9R053 Ift20-202ENSMUST00000108275 582 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Scn11aQ9R053 Mir1901-201ENSMUST00000122616 78 ntBASIC14.56□□□□□ -0.08
Scn11aQ9R053 C230038L03Rik-202ENSMUST00000136294 1197 ntTSL 2 BASIC14.56□□□□□ -0.08
Scn11aQ9R053 Gm15881-201ENSMUST00000148792 942 ntBASIC14.56□□□□□ -0.08
Scn11aQ9R053 Gm6397-201ENSMUST00000161973 1069 ntBASIC14.56□□□□□ -0.08
Scn11aQ9R053 Gm3150-201ENSMUST00000166418 204 ntBASIC14.56□□□□□ -0.08
Scn11aQ9R053 Ager-207ENSMUST00000173992 1248 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
Scn11aQ9R053 Lgals4-207ENSMUST00000208971 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
Scn11aQ9R053 AC153505.1-201ENSMUST00000218819 1071 ntBASIC14.56□□□□□ -0.08
Scn11aQ9R053 Gm9873-201ENSMUST00000063891 1097 ntBASIC14.56□□□□□ -0.08
Scn11aQ9R053 Gm7551-201ENSMUST00000089593 1074 ntBASIC14.56□□□□□ -0.08
Scn11aQ9R053 Pex5-204ENSMUST00000112531 3075 ntAPPRIS ALT1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Scn11aQ9R053 Tfap2c-202ENSMUST00000099058 2985 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
Scn11aQ9R053 AC173482.6-201ENSMUST00000225889 1741 ntBASIC14.56□□□□□ -0.08
Scn11aQ9R053 Celf4-201ENSMUST00000025117 2899 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
Scn11aQ9R053 Mocos-201ENSMUST00000068006 2884 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Scn11aQ9R053 Klhl31-201ENSMUST00000057781 6494 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Scn11aQ9R053 Myh7b-201ENSMUST00000092995 6163 ntAPPRIS P1 TSL 5 BASIC14.56□□□□□ -0.08
Scn11aQ9R053 Lpcat1-201ENSMUST00000022099 3675 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Scn11aQ9R053 Rgma-201ENSMUST00000094312 3586 ntAPPRIS P2 TSL 1 (best) BASIC14.56□□□□□ -0.08
Scn11aQ9R053 Gm9866-202ENSMUST00000182473 1882 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
Scn11aQ9R053 Ash2l-210ENSMUST00000166078 2234 ntAPPRIS ALT2 TSL 5 BASIC14.55□□□□□ -0.08
Scn11aQ9R053 Oasl1-201ENSMUST00000031540 2125 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Scn11aQ9R053 Mob3a-201ENSMUST00000003438 2682 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Scn11aQ9R053 Kctd11-201ENSMUST00000050555 3146 ntAPPRIS P1 BASIC14.55□□□□□ -0.08
Scn11aQ9R053 Adamtsl4-202ENSMUST00000117782 4036 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Scn11aQ9R053 Spcs3-201ENSMUST00000067476 3466 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Scn11aQ9R053 Tmem251-201ENSMUST00000057416 3367 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Scn11aQ9R053 Trav13d-4-201ENSMUST00000103607 264 ntAPPRIS P1 BASIC14.55□□□□□ -0.08
Scn11aQ9R053 Krtap4-8-201ENSMUST00000107439 983 ntAPPRIS P1 BASIC14.55□□□□□ -0.08
Scn11aQ9R053 Gm17231-202ENSMUST00000165858 663 ntTSL 5 BASIC14.55□□□□□ -0.08
Scn11aQ9R053 Prox2os-201ENSMUST00000177043 1133 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
Scn11aQ9R053 Trav13-4-dv7-202ENSMUST00000184905 264 ntAPPRIS P1 BASIC14.55□□□□□ -0.08
Scn11aQ9R053 Stpg4-202ENSMUST00000186211 591 ntAPPRIS ALT2 TSL 2 BASIC14.55□□□□□ -0.08
Scn11aQ9R053 8030442B05Rik-201ENSMUST00000192626 1035 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
Scn11aQ9R053 AC162938.2-204ENSMUST00000216455 984 ntTSL 5 BASIC14.55□□□□□ -0.08
Scn11aQ9R053 Gm40709-203ENSMUST00000219695 973 ntTSL 5 BASIC14.55□□□□□ -0.08
Scn11aQ9R053 Gm46204-201ENSMUST00000219800 411 ntTSL 3 BASIC14.55□□□□□ -0.08
Scn11aQ9R053 AC154290.1-201ENSMUST00000223786 1240 ntBASIC14.55□□□□□ -0.08
Scn11aQ9R053 Prss52-201ENSMUST00000022537 1064 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Scn11aQ9R053 1700012P22Rik-201ENSMUST00000030323 974 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Scn11aQ9R053 Tmc8-204ENSMUST00000119455 2736 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
Scn11aQ9R053 Gm16090-201ENSMUST00000130296 1704 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
Scn11aQ9R053 Cdkl2-204ENSMUST00000113143 2513 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
Scn11aQ9R053 Atp6v1b1-201ENSMUST00000006431 1999 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Scn11aQ9R053 Arsg-202ENSMUST00000106696 1508 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
Scn11aQ9R053 Srr-203ENSMUST00000108448 3239 ntAPPRIS P1 TSL 5 BASIC14.55□□□□□ -0.08
Scn11aQ9R053 Myc-205ENSMUST00000161976 2338 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
Scn11aQ9R053 Myc-201ENSMUST00000022971 2338 ntAPPRIS ALT1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Scn11aQ9R053 Slc24a4-201ENSMUST00000079020 2337 ntAPPRIS P2 TSL 1 (best) BASIC14.55□□□□□ -0.08
Scn11aQ9R053 Mcm6-201ENSMUST00000027601 2910 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Scn11aQ9R053 Pdyn-201ENSMUST00000028883 2386 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Scn11aQ9R053 Sema4b-204ENSMUST00000205822 3760 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Scn11aQ9R053 Pcid2-201ENSMUST00000164416 2860 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Scn11aQ9R053 Hspa2-202ENSMUST00000219555 2526 ntAPPRIS P1 BASIC14.55□□□□□ -0.08
Scn11aQ9R053 Zc3hav1l-201ENSMUST00000058524 6536 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Scn11aQ9R053 Ddx19b-202ENSMUST00000065784 3104 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
Scn11aQ9R053 Ccdc81-201ENSMUST00000041195 2439 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Scn11aQ9R053 Celf2-205ENSMUST00000114927 1721 ntAPPRIS ALT1 TSL 5 BASIC14.55□□□□□ -0.08
Scn11aQ9R053 Gm5136-201ENSMUST00000218023 1397 ntAPPRIS P1 BASIC14.55□□□□□ -0.08
Scn11aQ9R053 Got1l1-201ENSMUST00000038174 1356 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Scn11aQ9R053 Cdk2ap1-202ENSMUST00000111472 648 ntAPPRIS ALT1 TSL 5 BASIC14.55□□□□□ -0.08
Scn11aQ9R053 Gm8731-201ENSMUST00000118088 412 ntBASIC14.55□□□□□ -0.08
Scn11aQ9R053 Dmrtc1a-202ENSMUST00000119624 1149 ntAPPRIS ALT2 TSL 5 BASIC14.55□□□□□ -0.08
Scn11aQ9R053 Gm13263-201ENSMUST00000121271 838 ntBASIC14.55□□□□□ -0.08
Scn11aQ9R053 Gm13073-201ENSMUST00000134059 486 ntTSL 3 BASIC14.55□□□□□ -0.08
Scn11aQ9R053 Gm13966-201ENSMUST00000148420 832 ntTSL 3 BASIC14.55□□□□□ -0.08
Scn11aQ9R053 Gm13523-201ENSMUST00000151820 488 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
Scn11aQ9R053 Gm22144-201ENSMUST00000157402 102 ntBASIC14.55□□□□□ -0.08
Scn11aQ9R053 Gm9192-201ENSMUST00000183221 985 ntBASIC14.55□□□□□ -0.08
Scn11aQ9R053 Gm5621-201ENSMUST00000187303 640 ntBASIC14.55□□□□□ -0.08
Scn11aQ9R053 Ighv1-60-201ENSMUST00000195816 405 ntBASIC14.55□□□□□ -0.08
Scn11aQ9R053 Gm44980-201ENSMUST00000205826 314 ntBASIC14.55□□□□□ -0.08
Scn11aQ9R053 Gm11634-202ENSMUST00000209862 573 ntAPPRIS P5 TSL 5 BASIC14.55□□□□□ -0.08
Scn11aQ9R053 Gm45575-201ENSMUST00000210283 548 ntBASIC14.55□□□□□ -0.08
Scn11aQ9R053 5830428M24Rik-204ENSMUST00000223143 1034 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
Scn11aQ9R053 Ly6i-201ENSMUST00000023250 1156 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Scn11aQ9R053 Rpl10-ps3-201ENSMUST00000076364 768 ntAPPRIS P1 BASIC14.55□□□□□ -0.08
Scn11aQ9R053 Gm43267-201ENSMUST00000199664 1796 ntBASIC14.55□□□□□ -0.08
Scn11aQ9R053 Gm11476-201ENSMUST00000127006 2019 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
Scn11aQ9R053 Ddx23-201ENSMUST00000003450 3187 ntAPPRIS P1 TSL 5 BASIC14.54□□□□□ -0.08
Scn11aQ9R053 9130019P16Rik-202ENSMUST00000145111 4486 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
Scn11aQ9R053 Mxd3-201ENSMUST00000021941 1327 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Scn11aQ9R053 Knop1-205ENSMUST00000116280 5382 ntAPPRIS P3 TSL 5 BASIC14.54□□□□□ -0.08
Scn11aQ9R053 Arhgef40-220ENSMUST00000182909 5108 ntAPPRIS P4 TSL 5 BASIC14.54□□□□□ -0.08
Scn11aQ9R053 Riox2-206ENSMUST00000160571 2244 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Scn11aQ9R053 Ubr3-202ENSMUST00000112251 8081 ntAPPRIS ALT2 TSL 5 BASIC14.54□□□□□ -0.08
Scn11aQ9R053 Dtnb-223ENSMUST00000174547 2112 ntTSL 5 BASIC14.54□□□□□ -0.08
Scn11aQ9R053 Shank3-202ENSMUST00000066545 4702 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
Scn11aQ9R053 Chaf1a-201ENSMUST00000002914 3308 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Scn11aQ9R053 Hcls1-201ENSMUST00000023531 2016 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Scn11aQ9R053 Armcx3-202ENSMUST00000086880 2024 ntAPPRIS P1 TSL 2 BASIC14.54□□□□□ -0.08
Retrieved 100 of 76,532 protein–RNA pairs in 28.4 ms