Protein–RNA interactions for Protein: Q9ERG0

Lima1, LIM domain and actin-binding protein 1, mousemouse

Known RBP Predictions only

Length 753 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lima1Q9ERG0 Madd-210ENSMUST00000111372 5813 ntAPPRIS ALT2 TSL 2 BASIC12.33□□□□□ -0.44
Lima1Q9ERG0 A830082K12Rik-201ENSMUST00000123998 2203 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
Lima1Q9ERG0 Rtn4-202ENSMUST00000078830 3615 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
Lima1Q9ERG0 Il2rg-201ENSMUST00000033664 1670 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Lima1Q9ERG0 Sema6d-207ENSMUST00000103240 4372 ntAPPRIS ALT1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Lima1Q9ERG0 Wars-201ENSMUST00000109848 2831 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Lima1Q9ERG0 Gm12984-201ENSMUST00000145711 273 ntTSL 5 BASIC12.33□□□□□ -0.44
Lima1Q9ERG0 Mb-202ENSMUST00000166179 1056 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Lima1Q9ERG0 Mb-203ENSMUST00000169226 1106 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Lima1Q9ERG0 Neurl3-202ENSMUST00000188666 1206 ntTSL 5 BASIC12.33□□□□□ -0.44
Lima1Q9ERG0 Gm43666-201ENSMUST00000197116 2989 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
Lima1Q9ERG0 Srgn-201ENSMUST00000020271 938 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Lima1Q9ERG0 Letm2-213ENSMUST00000211422 738 ntTSL 5 BASIC12.33□□□□□ -0.44
Lima1Q9ERG0 Gm8598-201ENSMUST00000221184 836 ntBASIC12.33□□□□□ -0.44
Lima1Q9ERG0 Kcnk9-201ENSMUST00000044624 1209 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Lima1Q9ERG0 Olfr272-201ENSMUST00000051600 962 ntAPPRIS P1 BASIC12.33□□□□□ -0.44
Lima1Q9ERG0 Rps15-201ENSMUST00000062674 572 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
Lima1Q9ERG0 Gm11563-201ENSMUST00000092695 1012 ntAPPRIS P1 BASIC12.33□□□□□ -0.44
Lima1Q9ERG0 Gm815-201ENSMUST00000099536 610 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Lima1Q9ERG0 Rnf180-205ENSMUST00000226044 3279 ntAPPRIS ALT2 BASIC12.33□□□□□ -0.44
Lima1Q9ERG0 Syne3-203ENSMUST00000109927 5263 ntAPPRIS ALT2 TSL 5 BASIC12.33□□□□□ -0.44
Lima1Q9ERG0 Duoxa2-201ENSMUST00000028656 1592 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Lima1Q9ERG0 Med12l-203ENSMUST00000040846 3747 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
Lima1Q9ERG0 Pcnx-201ENSMUST00000021567 12139 ntAPPRIS P2 TSL 2 BASIC12.33□□□□□ -0.44
Lima1Q9ERG0 R3hdm2-210ENSMUST00000164831 2937 ntTSL 5 BASIC12.33□□□□□ -0.44
Lima1Q9ERG0 Samd4-201ENSMUST00000022386 4564 ntAPPRIS P4 TSL 1 (best) BASIC12.33□□□□□ -0.44
Lima1Q9ERG0 Slc36a1-202ENSMUST00000108867 1611 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Lima1Q9ERG0 Phrf1-202ENSMUST00000122143 4864 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
Lima1Q9ERG0 C1qtnf9-201ENSMUST00000025940 1903 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Lima1Q9ERG0 Tsku-203ENSMUST00000165257 2514 ntAPPRIS P1 TSL 2 BASIC12.33□□□□□ -0.44
Lima1Q9ERG0 Arhgap24-206ENSMUST00000112854 2991 ntTSL 5 BASIC12.33□□□□□ -0.44
Lima1Q9ERG0 Rps6kb1-202ENSMUST00000058286 3250 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
Lima1Q9ERG0 Drd1-202ENSMUST00000221470 3576 ntAPPRIS ALT2 TSL 1 (best) BASIC12.33□□□□□ -0.44
Lima1Q9ERG0 Fbxo18-201ENSMUST00000071564 3567 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Lima1Q9ERG0 Smc4-201ENSMUST00000042901 4316 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Lima1Q9ERG0 Pdik1l-201ENSMUST00000061234 4686 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Lima1Q9ERG0 Rnf26-205ENSMUST00000215685 1804 ntTSL 5 BASIC12.32□□□□□ -0.44
Lima1Q9ERG0 AC149222.1-201ENSMUST00000154987 5188 ntAPPRIS P5 TSL 1 (best) BASIC12.32□□□□□ -0.44
Lima1Q9ERG0 Gng7-203ENSMUST00000117805 3382 ntAPPRIS ALT1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Lima1Q9ERG0 Gm26584-201ENSMUST00000180551 3216 ntTSL 5 BASIC12.32□□□□□ -0.44
Lima1Q9ERG0 Dpyd-201ENSMUST00000039177 4492 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Lima1Q9ERG0 Lrp8-203ENSMUST00000106732 2648 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
Lima1Q9ERG0 Tcf4-254ENSMUST00000202674 2615 ntTSL 5 BASIC12.32□□□□□ -0.44
Lima1Q9ERG0 Tbl1xr1-211ENSMUST00000202747 4209 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Lima1Q9ERG0 Hnrnpk-202ENSMUST00000116403 2970 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
Lima1Q9ERG0 Gabrg3-201ENSMUST00000068394 1724 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
Lima1Q9ERG0 Chchd3-201ENSMUST00000066379 1550 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Lima1Q9ERG0 F730043M19Rik-204ENSMUST00000148740 3312 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
Lima1Q9ERG0 Rpl38-204ENSMUST00000106602 371 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Lima1Q9ERG0 Prss45-201ENSMUST00000011391 1232 ntAPPRIS P2 TSL 1 (best) BASIC12.32□□□□□ -0.44
Lima1Q9ERG0 Gm12960-201ENSMUST00000120017 1066 ntBASIC12.32□□□□□ -0.44
Lima1Q9ERG0 Gm12490-201ENSMUST00000120255 560 ntBASIC12.32□□□□□ -0.44
Lima1Q9ERG0 Cryaa-201ENSMUST00000019192 1176 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
Lima1Q9ERG0 Gm42722-201ENSMUST00000198855 940 ntTSL 3 BASIC12.32□□□□□ -0.44
Lima1Q9ERG0 Gm34549-203ENSMUST00000208300 896 ntTSL 5 BASIC12.32□□□□□ -0.44
Lima1Q9ERG0 4933405L10Rik-202ENSMUST00000211852 1097 ntAPPRIS ALT2 TSL 1 (best) BASIC12.32□□□□□ -0.44
Lima1Q9ERG0 Gstt2-203ENSMUST00000218500 794 ntTSL 5 BASIC12.32□□□□□ -0.44
Lima1Q9ERG0 1700067P10Rik-201ENSMUST00000022028 794 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Lima1Q9ERG0 AC110817.1-201ENSMUST00000225706 605 ntBASIC12.32□□□□□ -0.44
Lima1Q9ERG0 Fkbp7-201ENSMUST00000002809 860 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Lima1Q9ERG0 Mt1-201ENSMUST00000034215 549 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Lima1Q9ERG0 Olfr373-201ENSMUST00000074540 945 ntAPPRIS P1 BASIC12.32□□□□□ -0.44
Lima1Q9ERG0 Tada3-203ENSMUST00000099118 1282 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
Lima1Q9ERG0 Actb-201ENSMUST00000100497 1920 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Lima1Q9ERG0 Gm44089-201ENSMUST00000203624 1930 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
Lima1Q9ERG0 Otub2-202ENSMUST00000101094 3228 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
Lima1Q9ERG0 Wdr66-202ENSMUST00000121964 4873 ntAPPRIS P1 TSL 5 BASIC12.32□□□□□ -0.44
Lima1Q9ERG0 Ccdc151-202ENSMUST00000115336 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC12.32□□□□□ -0.44
Lima1Q9ERG0 Chchd10-203ENSMUST00000219839 1488 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Lima1Q9ERG0 Mylip-202ENSMUST00000222178 1954 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
Lima1Q9ERG0 Misp-202ENSMUST00000169041 2497 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Lima1Q9ERG0 Cdc7-201ENSMUST00000031221 2961 ntAPPRIS P3 TSL 1 (best) BASIC12.32□□□□□ -0.44
Lima1Q9ERG0 Wdfy2-201ENSMUST00000014691 6646 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Lima1Q9ERG0 Pik3cd-206ENSMUST00000122059 4832 ntAPPRIS ALT1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Lima1Q9ERG0 Map3k4-201ENSMUST00000089058 5305 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Lima1Q9ERG0 Acsm4-201ENSMUST00000047045 2152 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Lima1Q9ERG0 Pde4d-201ENSMUST00000074103 2167 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
Lima1Q9ERG0 Mthfd1l-201ENSMUST00000043735 3535 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Lima1Q9ERG0 1700082M22Rik-201ENSMUST00000067136 2022 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
Lima1Q9ERG0 Odf3-202ENSMUST00000106049 1509 ntTSL 5 BASIC12.32□□□□□ -0.44
Lima1Q9ERG0 Tbcd-201ENSMUST00000103013 3906 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Lima1Q9ERG0 Prr36-201ENSMUST00000168386 4616 ntAPPRIS P1 TSL 5 BASIC12.31□□□□□ -0.44
Lima1Q9ERG0 Slx4ip-201ENSMUST00000028737 2556 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
Lima1Q9ERG0 Tmem97-201ENSMUST00000103242 1375 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Lima1Q9ERG0 Pef1-201ENSMUST00000030563 1551 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Lima1Q9ERG0 Arhgef2-203ENSMUST00000170653 4238 ntAPPRIS ALT2 TSL 1 (best) BASIC12.31□□□□□ -0.44
Lima1Q9ERG0 Dram1-201ENSMUST00000020249 2807 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Lima1Q9ERG0 Arl8b-201ENSMUST00000032196 4443 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Lima1Q9ERG0 Gm10371-201ENSMUST00000127429 1411 ntTSL 2 BASIC12.31□□□□□ -0.44
Lima1Q9ERG0 1110051M20Rik-203ENSMUST00000102594 1977 ntAPPRIS P3 TSL 1 (best) BASIC12.31□□□□□ -0.44
Lima1Q9ERG0 Smarca1-205ENSMUST00000141084 1965 ntTSL 2 BASIC12.31□□□□□ -0.44
Lima1Q9ERG0 Gm43984-201ENSMUST00000204572 2864 ntBASIC12.31□□□□□ -0.44
Lima1Q9ERG0 Hmgcs2-202ENSMUST00000120541 2524 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Lima1Q9ERG0 Prrxl1-201ENSMUST00000068938 1610 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
Lima1Q9ERG0 Slco3a1-202ENSMUST00000098371 2709 ntAPPRIS ALT1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Lima1Q9ERG0 Pcnx3-202ENSMUST00000113615 7264 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Lima1Q9ERG0 Plod3-201ENSMUST00000004968 3280 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Lima1Q9ERG0 Rhox2f-201ENSMUST00000115173 799 ntAPPRIS P1 TSL 5 BASIC12.31□□□□□ -0.44
Lima1Q9ERG0 Ift20-203ENSMUST00000128788 1141 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Lima1Q9ERG0 Gm11851-201ENSMUST00000132219 692 ntTSL 5 BASIC12.31□□□□□ -0.44
Retrieved 100 of 76,532 protein–RNA pairs in 32.2 ms