Protein–RNA interactions for Protein: Q8VI40

Trim60, Tripartite motif-containing protein 60, mousemouse

Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim60Q8VI40 Gm4559-201ENSMUST00000080669 600 ntAPPRIS P1 BASIC12.92□□□□□ -0.34
Trim60Q8VI40 Zbtb44-201ENSMUST00000115222 8861 ntTSL 5 BASIC12.92□□□□□ -0.34
Trim60Q8VI40 Sorcs1-203ENSMUST00000164039 7241 ntAPPRIS ALT1 TSL 5 BASIC12.92□□□□□ -0.34
Trim60Q8VI40 Stau1-203ENSMUST00000109236 2860 ntAPPRIS P3 TSL 1 (best) BASIC12.92□□□□□ -0.34
Trim60Q8VI40 Gm35040-201ENSMUST00000206829 5094 ntTSL 2 BASIC12.92□□□□□ -0.34
Trim60Q8VI40 1700001L05Rik-201ENSMUST00000100370 2270 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
Trim60Q8VI40 Jph2-202ENSMUST00000109425 4155 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Trim60Q8VI40 Runx3-201ENSMUST00000056977 3884 ntAPPRIS P2 TSL 1 (best) BASIC12.92□□□□□ -0.34
Trim60Q8VI40 Dnmt3l-205ENSMUST00000138785 1822 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Trim60Q8VI40 Avpr2-201ENSMUST00000033765 1812 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Trim60Q8VI40 Gm26883-201ENSMUST00000180945 4878 ntTSL 5 BASIC12.92□□□□□ -0.34
Trim60Q8VI40 Tm9sf2-201ENSMUST00000026624 3107 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Trim60Q8VI40 Calm1-202ENSMUST00000110082 4115 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Trim60Q8VI40 Nat3-201ENSMUST00000070514 1395 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Trim60Q8VI40 Ppara-203ENSMUST00000109423 2519 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Trim60Q8VI40 Gm10544-202ENSMUST00000181887 1923 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
Trim60Q8VI40 Ankrd42-201ENSMUST00000056106 2788 ntAPPRIS ALT2 TSL 1 (best) BASIC12.92□□□□□ -0.34
Trim60Q8VI40 Aknad1-202ENSMUST00000133931 2603 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Trim60Q8VI40 Capn3-201ENSMUST00000028748 2606 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
Trim60Q8VI40 Alpi-201ENSMUST00000113270 2337 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Trim60Q8VI40 Gm13050-201ENSMUST00000122149 1345 ntBASIC12.91□□□□□ -0.34
Trim60Q8VI40 Sox7-201ENSMUST00000079652 3299 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Trim60Q8VI40 Kif1a-201ENSMUST00000086819 5097 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
Trim60Q8VI40 Tonsl-207ENSMUST00000168185 4235 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
Trim60Q8VI40 Picalm-213ENSMUST00000208742 3361 ntAPPRIS ALT2 TSL 1 (best) BASIC12.91□□□□□ -0.34
Trim60Q8VI40 Zfp335-201ENSMUST00000041361 4587 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Trim60Q8VI40 Tcf12-218ENSMUST00000184783 3489 ntAPPRIS P3 TSL 5 BASIC12.91□□□□□ -0.34
Trim60Q8VI40 Sesn2-201ENSMUST00000030724 3475 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Trim60Q8VI40 Gm10371-201ENSMUST00000127429 1411 ntTSL 2 BASIC12.91□□□□□ -0.34
Trim60Q8VI40 Foxj3-202ENSMUST00000106310 4660 ntAPPRIS ALT2 TSL 1 (best) BASIC12.91□□□□□ -0.34
Trim60Q8VI40 Zbtb32-201ENSMUST00000108150 854 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
Trim60Q8VI40 Sumo2-204ENSMUST00000118155 884 ntTSL 2 BASIC12.91□□□□□ -0.34
Trim60Q8VI40 Akirin1-ps-201ENSMUST00000119676 458 ntBASIC12.91□□□□□ -0.34
Trim60Q8VI40 Gm13492-201ENSMUST00000119772 665 ntBASIC12.91□□□□□ -0.34
Trim60Q8VI40 Mrps17-205ENSMUST00000119985 859 ntAPPRIS P1 TSL 2 BASIC12.91□□□□□ -0.34
Trim60Q8VI40 Nr2f1-203ENSMUST00000127137 991 ntTSL 5 BASIC12.91□□□□□ -0.34
Trim60Q8VI40 Meg3-208ENSMUST00000143847 706 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
Trim60Q8VI40 Gm12984-201ENSMUST00000145711 273 ntTSL 5 BASIC12.91□□□□□ -0.34
Trim60Q8VI40 Gm12678-201ENSMUST00000154177 692 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
Trim60Q8VI40 Ssr4-208ENSMUST00000166518 800 ntAPPRIS ALT2 TSL 1 (best) BASIC12.91□□□□□ -0.34
Trim60Q8VI40 Myl10-202ENSMUST00000196068 911 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
Trim60Q8VI40 Myl10-203ENSMUST00000196436 598 ntTSL 3 BASIC12.91□□□□□ -0.34
Trim60Q8VI40 Mymx-204ENSMUST00000208801 437 ntAPPRIS ALT2 TSL 2 BASIC12.91□□□□□ -0.34
Trim60Q8VI40 AC131743.2-201ENSMUST00000221031 968 ntTSL 5 BASIC12.91□□□□□ -0.34
Trim60Q8VI40 AC155237.1-201ENSMUST00000226196 1279 ntBASIC12.91□□□□□ -0.34
Trim60Q8VI40 Nkiras2-202ENSMUST00000051947 831 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Trim60Q8VI40 Epha5-206ENSMUST00000113406 4606 ntAPPRIS ALT2 TSL 5 BASIC12.91□□□□□ -0.34
Trim60Q8VI40 Steap3-204ENSMUST00000112643 2873 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
Trim60Q8VI40 Ildr1-203ENSMUST00000119464 2878 ntAPPRIS P3 TSL 1 (best) BASIC12.91□□□□□ -0.34
Trim60Q8VI40 C1qtnf9-201ENSMUST00000025940 1903 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Trim60Q8VI40 Rims4-201ENSMUST00000044734 4962 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Trim60Q8VI40 Mapkapk5-204ENSMUST00000111783 1513 ntAPPRIS ALT1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Trim60Q8VI40 Hdac5-202ENSMUST00000107150 3759 ntAPPRIS ALT2 TSL 1 (best) BASIC12.91□□□□□ -0.34
Trim60Q8VI40 Rapgef3-203ENSMUST00000126854 4005 ntAPPRIS P2 TSL 1 (best) BASIC12.91□□□□□ -0.34
Trim60Q8VI40 Abcd1-201ENSMUST00000002084 3648 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Trim60Q8VI40 Slc5a11-207ENSMUST00000167299 2022 ntAPPRIS P1 TSL 5 BASIC12.91□□□□□ -0.34
Trim60Q8VI40 Nfix-203ENSMUST00000109762 2261 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
Trim60Q8VI40 Hnrnpf-209ENSMUST00000180020 2280 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Trim60Q8VI40 Spata33-208ENSMUST00000212892 2940 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
Trim60Q8VI40 Zc3h12d-201ENSMUST00000039484 4092 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Trim60Q8VI40 Nemp1-203ENSMUST00000118728 2362 ntAPPRIS ALT2 TSL 1 (best) BASIC12.91□□□□□ -0.34
Trim60Q8VI40 Yif1a-201ENSMUST00000025811 1493 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Trim60Q8VI40 Rgs7bp-201ENSMUST00000063551 7077 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Trim60Q8VI40 Ebf3-203ENSMUST00000168203 3724 ntAPPRIS ALT1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Trim60Q8VI40 Cyp26b1-204ENSMUST00000204146 4495 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Trim60Q8VI40 Usp5-202ENSMUST00000122110 3076 ntAPPRIS ALT1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Trim60Q8VI40 Calu-206ENSMUST00000172974 3063 ntTSL 5 BASIC12.9□□□□□ -0.34
Trim60Q8VI40 Asph-207ENSMUST00000108333 2652 ntTSL 5 BASIC12.9□□□□□ -0.34
Trim60Q8VI40 AC166574.4-201ENSMUST00000227165 1937 ntBASIC12.9□□□□□ -0.34
Trim60Q8VI40 Neu4-201ENSMUST00000050890 4511 ntAPPRIS P3 TSL 1 (best) BASIC12.9□□□□□ -0.34
Trim60Q8VI40 Tmcc3-204ENSMUST00000121471 2614 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
Trim60Q8VI40 Cntnap1-201ENSMUST00000103109 5440 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Trim60Q8VI40 Lcn5-203ENSMUST00000100313 660 ntAPPRIS ALT2 TSL 1 (best) BASIC12.9□□□□□ -0.34
Trim60Q8VI40 Rps8-201ENSMUST00000102696 860 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Trim60Q8VI40 D930015M05Rik-201ENSMUST00000126002 1190 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
Trim60Q8VI40 Ift20-203ENSMUST00000128788 1141 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Trim60Q8VI40 Gm14966-202ENSMUST00000129675 649 ntTSL 2 BASIC12.9□□□□□ -0.34
Trim60Q8VI40 Gm27486-201ENSMUST00000184923 80 ntBASIC12.9□□□□□ -0.34
Trim60Q8VI40 Zfp709-202ENSMUST00000188374 717 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
Trim60Q8VI40 Slc10a7-204ENSMUST00000209992 939 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
Trim60Q8VI40 Gm9908-201ENSMUST00000211534 448 ntBASIC12.9□□□□□ -0.34
Trim60Q8VI40 Isca2-201ENSMUST00000021667 883 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Trim60Q8VI40 Gng8-201ENSMUST00000078182 910 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Trim60Q8VI40 Camkmt-201ENSMUST00000095188 972 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Trim60Q8VI40 Dab2ip-209ENSMUST00000135741 4128 ntAPPRIS ALT2 TSL 1 (best) BASIC12.9□□□□□ -0.34
Trim60Q8VI40 Dnmt1-201ENSMUST00000004202 5367 ntAPPRIS P4 TSL 1 (best) BASIC12.9□□□□□ -0.34
Trim60Q8VI40 Gm13657-201ENSMUST00000135682 1939 ntTSL 1 (best) BASIC12.9□□□□□ -0.35
Trim60Q8VI40 Six4-202ENSMUST00000175693 6817 ntAPPRIS ALT2 TSL 5 BASIC12.9□□□□□ -0.35
Trim60Q8VI40 Zfp1-203ENSMUST00000212072 1930 ntTSL 1 (best) BASIC12.9□□□□□ -0.35
Trim60Q8VI40 Gm26823-201ENSMUST00000181425 2361 ntTSL 5 BASIC12.89□□□□□ -0.35
Trim60Q8VI40 Gm44929-202ENSMUST00000209134 1653 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
Trim60Q8VI40 Itfg2-203ENSMUST00000142615 3191 ntAPPRIS ALT2 TSL 1 (best) BASIC12.89□□□□□ -0.35
Trim60Q8VI40 P2rx1-201ENSMUST00000021141 2486 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Trim60Q8VI40 Dars2-201ENSMUST00000035430 3619 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Trim60Q8VI40 Sin3a-206ENSMUST00000168177 5086 ntAPPRIS ALT1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Trim60Q8VI40 Hhipl2-202ENSMUST00000192527 2310 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
Trim60Q8VI40 Gm9881-201ENSMUST00000068783 3205 ntAPPRIS P1 BASIC12.89□□□□□ -0.35
Trim60Q8VI40 Rubie-203ENSMUST00000227803 2430 ntBASIC12.89□□□□□ -0.35
Trim60Q8VI40 Ly75-202ENSMUST00000112533 6901 ntAPPRIS ALT2 TSL 5 BASIC12.89□□□□□ -0.35
Trim60Q8VI40 Esr1-201ENSMUST00000067086 4344 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Retrieved 100 of 76,532 protein–RNA pairs in 41.1 ms