Protein–RNA interactions for Protein: Q8CFK2

Brf1, Transcription factor IIIB 90 kDa subunit, mousemouse

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Brf1Q8CFK2 Sidt1-205ENSMUST00000136381 4404 ntAPPRIS P3 TSL 1 (best) BASIC15.07■□□□□ 0
Brf1Q8CFK2 Stau1-203ENSMUST00000109236 2860 ntAPPRIS P3 TSL 1 (best) BASIC15.07■□□□□ 0
Brf1Q8CFK2 Steap3-204ENSMUST00000112643 2873 ntTSL 1 (best) BASIC15.07■□□□□ 0
Brf1Q8CFK2 Kif1c-204ENSMUST00000137119 6596 ntAPPRIS P2 TSL 5 BASIC15.07■□□□□ 0
Brf1Q8CFK2 Acin1-208ENSMUST00000126166 2369 ntTSL 1 (best) BASIC15.07■□□□□ 0
Brf1Q8CFK2 Erich5-201ENSMUST00000060894 2383 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Brf1Q8CFK2 Adh6a-202ENSMUST00000106247 1341 ntAPPRIS P2 TSL 1 (best) BASIC15.07■□□□□ 0
Brf1Q8CFK2 Cct5-201ENSMUST00000022842 1853 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Brf1Q8CFK2 Kdm4a-202ENSMUST00000097911 4550 ntAPPRIS ALT2 TSL 1 (best) BASIC15.07■□□□□ 0
Brf1Q8CFK2 Ppargc1b-202ENSMUST00000075299 3656 ntAPPRIS P2 TSL 1 (best) BASIC15.07■□□□□ 0
Brf1Q8CFK2 Syt1-202ENSMUST00000105276 4820 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Brf1Q8CFK2 Aldoa-203ENSMUST00000106348 1460 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Brf1Q8CFK2 Tbc1d14-205ENSMUST00000136189 4436 ntTSL 1 (best) BASIC15.07■□□□□ 0
Brf1Q8CFK2 AC122228.1-201ENSMUST00000223113 2057 ntTSL 5 BASIC15.07■□□□□ 0
Brf1Q8CFK2 Unc45a-201ENSMUST00000032748 3260 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Brf1Q8CFK2 Wnt7b-201ENSMUST00000023015 3371 ntAPPRIS P3 TSL 1 (best) BASIC15.07■□□□□ 0
Brf1Q8CFK2 Zfp369-203ENSMUST00000130799 1580 ntTSL 1 (best) BASIC15.07■□□□□ 0
Brf1Q8CFK2 Prickle1-202ENSMUST00000109255 4144 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Brf1Q8CFK2 Hnrnpf-209ENSMUST00000180020 2280 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Brf1Q8CFK2 Ppp1r15a-201ENSMUST00000042105 2333 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Brf1Q8CFK2 Zbtb20-201ENSMUST00000079441 3086 ntAPPRIS P3 TSL 5 BASIC15.06■□□□□ 0
Brf1Q8CFK2 C2cd4c-201ENSMUST00000059699 6729 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Brf1Q8CFK2 Bcl9l-201ENSMUST00000074989 5339 ntAPPRIS P2 TSL 1 (best) BASIC15.06■□□□□ 0
Brf1Q8CFK2 Skp2-203ENSMUST00000190131 1819 ntTSL 1 (best) BASIC15.06■□□□□ 0
Brf1Q8CFK2 Chrna9-201ENSMUST00000031108 1843 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Brf1Q8CFK2 Lef1-204ENSMUST00000106341 3357 ntTSL 1 (best) BASIC15.06■□□□□ 0
Brf1Q8CFK2 Lef1-202ENSMUST00000066849 3398 ntAPPRIS ALT1 TSL 5 BASIC15.06■□□□□ 0
Brf1Q8CFK2 Bcl2l15-202ENSMUST00000106822 1902 ntTSL 1 (best) BASIC15.06■□□□□ 0
Brf1Q8CFK2 Stard5-202ENSMUST00000117410 2832 ntTSL 1 (best) BASIC15.06■□□□□ 0
Brf1Q8CFK2 Mrpl55-203ENSMUST00000108785 792 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Brf1Q8CFK2 Foxp1-205ENSMUST00000113324 2121 ntTSL 5 BASIC15.06■□□□□ 0
Brf1Q8CFK2 Foxp1-207ENSMUST00000113328 2121 ntTSL 1 (best) BASIC15.06■□□□□ 0
Brf1Q8CFK2 Thoc6-204ENSMUST00000115490 1157 ntTSL 5 BASIC15.06■□□□□ 0
Brf1Q8CFK2 4933407E24Rik-201ENSMUST00000133499 969 ntTSL 2 BASIC15.06■□□□□ 0
Brf1Q8CFK2 Pitx2-204ENSMUST00000172645 915 ntTSL 1 (best) BASIC15.06■□□□□ 0
Brf1Q8CFK2 Foxp1-228ENSMUST00000177307 2121 ntTSL 1 (best) BASIC15.06■□□□□ 0
Brf1Q8CFK2 Gm5597-201ENSMUST00000182353 1193 ntBASIC15.06■□□□□ 0
Brf1Q8CFK2 Gm27017-201ENSMUST00000183031 656 ntTSL 3 BASIC15.06■□□□□ 0
Brf1Q8CFK2 Mir8109-201ENSMUST00000184375 117 ntBASIC15.06■□□□□ 0
Brf1Q8CFK2 1700031P21Rik-203ENSMUST00000191400 466 ntTSL 3 BASIC15.06■□□□□ 0
Brf1Q8CFK2 Gm44124-201ENSMUST00000204159 472 ntBASIC15.06■□□□□ 0
Brf1Q8CFK2 Olfr524-201ENSMUST00000051943 1058 ntAPPRIS P1 BASIC15.06■□□□□ 0
Brf1Q8CFK2 Gm9899-201ENSMUST00000065519 555 ntBASIC15.06■□□□□ 0
Brf1Q8CFK2 Pag1-204ENSMUST00000161949 8256 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Brf1Q8CFK2 Arhgef40-202ENSMUST00000100639 4843 ntAPPRIS ALT2 TSL 1 (best) BASIC15.06■□□□□ 0
Brf1Q8CFK2 Gm45342-201ENSMUST00000210903 1363 ntBASIC15.06■□□□□ 0
Brf1Q8CFK2 Phyhd1-202ENSMUST00000091132 1353 ntTSL 1 (best) BASIC15.06■□□□□ 0
Brf1Q8CFK2 Incenp-201ENSMUST00000025562 3217 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Brf1Q8CFK2 Arid5a-204ENSMUST00000115032 4640 ntAPPRIS P3 TSL 1 (best) BASIC15.06■□□□□ 0
Brf1Q8CFK2 Capn3-203ENSMUST00000090028 2640 ntTSL 5 BASIC15.06■□□□□ 0
Brf1Q8CFK2 Synpo-209ENSMUST00000143275 5040 ntAPPRIS ALT2 TSL 5 BASIC15.06■□□□□ 0
Brf1Q8CFK2 Eif5-202ENSMUST00000166123 4050 ntAPPRIS P2 TSL 1 (best) BASIC15.06■□□□□ 0
Brf1Q8CFK2 Ephb3-201ENSMUST00000006112 4185 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Brf1Q8CFK2 Trip13-201ENSMUST00000022053 3399 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
Brf1Q8CFK2 2810429I04Rik-203ENSMUST00000181708 4769 ntTSL 1 (best) BASIC15.05■□□□□ 0
Brf1Q8CFK2 Tcf4-205ENSMUST00000114980 2192 ntAPPRIS P1 TSL 5 BASIC15.05■□□□□ 0
Brf1Q8CFK2 Senp3-201ENSMUST00000005336 2313 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
Brf1Q8CFK2 Wdfy1-204ENSMUST00000113512 4551 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
Brf1Q8CFK2 Wdfy1-205ENSMUST00000113513 4551 ntAPPRIS P1 TSL 5 BASIC15.05■□□□□ 0
Brf1Q8CFK2 Wdfy1-206ENSMUST00000113514 4551 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
Brf1Q8CFK2 Wdfy1-207ENSMUST00000113515 4551 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
Brf1Q8CFK2 Chrnd-201ENSMUST00000073252 2925 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
Brf1Q8CFK2 Shc1-203ENSMUST00000107417 3079 ntTSL 1 (best) BASIC15.05■□□□□ 0
Brf1Q8CFK2 Srr-203ENSMUST00000108448 3239 ntAPPRIS P1 TSL 5 BASIC15.05■□□□□ -0
Brf1Q8CFK2 Entpd4-206ENSMUST00000184973 3589 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Brf1Q8CFK2 Entpd4b-204ENSMUST00000185072 3589 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Brf1Q8CFK2 1700049J03Rik-201ENSMUST00000011196 421 ntTSL 1 (best) BASIC15.05■□□□□ -0
Brf1Q8CFK2 Nmi-202ENSMUST00000112705 1130 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Brf1Q8CFK2 Gm11531-201ENSMUST00000117614 555 ntBASIC15.05■□□□□ -0
Brf1Q8CFK2 Gm9083-201ENSMUST00000120423 819 ntBASIC15.05■□□□□ -0
Brf1Q8CFK2 Gm12050-201ENSMUST00000127483 615 ntTSL 1 (best) BASIC15.05■□□□□ -0
Brf1Q8CFK2 Gm14230-202ENSMUST00000137463 874 ntTSL 2 BASIC15.05■□□□□ -0
Brf1Q8CFK2 Hoxb5os-202ENSMUST00000150698 596 ntTSL 1 (best) BASIC15.05■□□□□ -0
Brf1Q8CFK2 Gm25043-201ENSMUST00000158604 212 ntBASIC15.05■□□□□ -0
Brf1Q8CFK2 Gm23119-201ENSMUST00000158610 140 ntBASIC15.05■□□□□ -0
Brf1Q8CFK2 Gm7008-202ENSMUST00000170019 402 ntTSL 2 BASIC15.05■□□□□ -0
Brf1Q8CFK2 Gm27023-201ENSMUST00000182372 285 ntBASIC15.05■□□□□ -0
Brf1Q8CFK2 Gm42920-201ENSMUST00000196616 409 ntTSL 3 BASIC15.05■□□□□ -0
Brf1Q8CFK2 Gm19710-201ENSMUST00000200257 640 ntTSL 1 (best) BASIC15.05■□□□□ -0
Brf1Q8CFK2 Gm44066-201ENSMUST00000203263 519 ntTSL 3 BASIC15.05■□□□□ -0
Brf1Q8CFK2 Gm45022-201ENSMUST00000208332 545 ntTSL 5 BASIC15.05■□□□□ -0
Brf1Q8CFK2 Svip-203ENSMUST00000209193 487 ntTSL 1 (best) BASIC15.05■□□□□ -0
Brf1Q8CFK2 Gm5950-201ENSMUST00000213337 772 ntBASIC15.05■□□□□ -0
Brf1Q8CFK2 Gm29154-230ENSMUST00000215044 1165 ntTSL 5 BASIC15.05■□□□□ -0
Brf1Q8CFK2 CT033793.1-201ENSMUST00000216883 565 ntTSL 5 BASIC15.05■□□□□ -0
Brf1Q8CFK2 Gm36634-201ENSMUST00000218356 1259 ntTSL 3 BASIC15.05■□□□□ -0
Brf1Q8CFK2 Riiad1-201ENSMUST00000029785 630 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Brf1Q8CFK2 Itln1-201ENSMUST00000043094 1141 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Brf1Q8CFK2 Dnal4-202ENSMUST00000069877 1011 ntTSL 5 BASIC15.05■□□□□ -0
Brf1Q8CFK2 Spaca4-201ENSMUST00000094424 707 ntAPPRIS P1 BASIC15.05■□□□□ -0
Brf1Q8CFK2 Yipf1-201ENSMUST00000075693 1321 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Brf1Q8CFK2 Klhl18-201ENSMUST00000068025 4530 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Brf1Q8CFK2 Parp3-202ENSMUST00000112479 2030 ntAPPRIS ALT2 TSL 1 (best) BASIC15.05■□□□□ -0
Brf1Q8CFK2 Gm26543-201ENSMUST00000180729 2221 ntTSL 1 (best) BASIC15.05■□□□□ -0
Brf1Q8CFK2 Ank2-217ENSMUST00000182610 2231 ntTSL 1 (best) BASIC15.05■□□□□ -0
Brf1Q8CFK2 Hipk4-201ENSMUST00000037134 2926 ntTSL 1 (best) BASIC15.05■□□□□ -0
Brf1Q8CFK2 Mrpl3-201ENSMUST00000035177 3972 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Brf1Q8CFK2 Ebp-201ENSMUST00000033509 1743 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Brf1Q8CFK2 Catsper4-201ENSMUST00000055892 1725 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Brf1Q8CFK2 Rph3al-201ENSMUST00000021208 1690 ntTSL 1 (best) BASIC15.04■□□□□ -0
Retrieved 100 of 76,532 protein–RNA pairs in 37 ms