Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Tnfrsf19-203ENSMUST00000224371 1239 ntAPPRIS ALT2 BASIC17.06■□□□□ 0.32
Usp40Q8BWR4 AC169036.1-201ENSMUST00000227994 296 ntBASIC17.06■□□□□ 0.32
Usp40Q8BWR4 Azgp1-201ENSMUST00000035390 1297 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Usp40Q8BWR4 Stim1-201ENSMUST00000033289 4085 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Usp40Q8BWR4 Ispd-205ENSMUST00000221895 4022 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Usp40Q8BWR4 Git1-201ENSMUST00000037285 3512 ntAPPRIS P2 TSL 1 (best) BASIC17.06■□□□□ 0.32
Usp40Q8BWR4 Neurl3-201ENSMUST00000056946 2598 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Usp40Q8BWR4 Iffo2-201ENSMUST00000040023 5227 ntAPPRIS P3 TSL 5 BASIC17.06■□□□□ 0.32
Usp40Q8BWR4 D230025D16Rik-201ENSMUST00000034361 2916 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Usp40Q8BWR4 Polr2a-202ENSMUST00000071213 5799 ntTSL 5 BASIC17.06■□□□□ 0.32
Usp40Q8BWR4 Etv3-202ENSMUST00000119109 5309 ntAPPRIS P2 TSL 1 (best) BASIC17.06■□□□□ 0.32
Usp40Q8BWR4 Igf2-204ENSMUST00000105936 3970 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
Usp40Q8BWR4 Chrnd-202ENSMUST00000186373 2949 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
Usp40Q8BWR4 Pja1-204ENSMUST00000113797 1676 ntAPPRIS ALT2 TSL 2 BASIC17.05■□□□□ 0.32
Usp40Q8BWR4 Cep170b-204ENSMUST00000220627 5395 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
Usp40Q8BWR4 Tbl1xr1-203ENSMUST00000193734 8237 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Usp40Q8BWR4 Ighv1-80-201ENSMUST00000103547 351 ntAPPRIS P1 BASIC17.05■□□□□ 0.32
Usp40Q8BWR4 Trav13-1-201ENSMUST00000103651 331 ntAPPRIS P1 BASIC17.05■□□□□ 0.32
Usp40Q8BWR4 Lyzl6-202ENSMUST00000107014 802 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Usp40Q8BWR4 Dusp13-204ENSMUST00000120984 976 ntAPPRIS ALT1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Usp40Q8BWR4 Tmem116-209ENSMUST00000156080 1184 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
Usp40Q8BWR4 Sap25-201ENSMUST00000166099 1101 ntAPPRIS P2 TSL 1 (best) BASIC17.05■□□□□ 0.32
Usp40Q8BWR4 1110008E08Rik-202ENSMUST00000183621 723 ntBASIC17.05■□□□□ 0.32
Usp40Q8BWR4 2810405F17Rik-201ENSMUST00000189334 1117 ntBASIC17.05■□□□□ 0.32
Usp40Q8BWR4 Gm45118-201ENSMUST00000208928 825 ntBASIC17.05■□□□□ 0.32
Usp40Q8BWR4 Gm14267-206ENSMUST00000226870 1209 ntBASIC17.05■□□□□ 0.32
Usp40Q8BWR4 Nudt7-201ENSMUST00000066514 935 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
Usp40Q8BWR4 Mrpl18-201ENSMUST00000079121 1219 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Usp40Q8BWR4 Olfr959-201ENSMUST00000079178 1055 ntAPPRIS P1 BASIC17.05■□□□□ 0.32
Usp40Q8BWR4 Rp2-202ENSMUST00000115387 4498 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
Usp40Q8BWR4 Nxf1-201ENSMUST00000010241 2326 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Usp40Q8BWR4 Dcst1-201ENSMUST00000070820 2342 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Usp40Q8BWR4 Dusp14-201ENSMUST00000018792 1571 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
Usp40Q8BWR4 Snrpn-201ENSMUST00000059305 1932 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Usp40Q8BWR4 Gm5422-202ENSMUST00000216161 2928 ntTSL 5 BASIC17.05■□□□□ 0.32
Usp40Q8BWR4 Plekha7-203ENSMUST00000181998 5149 ntAPPRIS P2 TSL 1 (best) BASIC17.05■□□□□ 0.32
Usp40Q8BWR4 Kcnj11-205ENSMUST00000211674 3142 ntAPPRIS P1 BASIC17.05■□□□□ 0.32
Usp40Q8BWR4 Gm595-201ENSMUST00000114928 2122 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Usp40Q8BWR4 Kcnip4-207ENSMUST00000176191 2116 ntTSL 5 BASIC17.05■□□□□ 0.32
Usp40Q8BWR4 Chd4-203ENSMUST00000112392 6652 ntAPPRIS ALT2 TSL 5 BASIC17.05■□□□□ 0.32
Usp40Q8BWR4 Rapgef3-217ENSMUST00000177352 3395 ntAPPRIS ALT1 TSL 5 BASIC17.05■□□□□ 0.32
Usp40Q8BWR4 Mgat1-202ENSMUST00000101293 2729 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Usp40Q8BWR4 Adcyap1r1-203ENSMUST00000165786 1745 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
Usp40Q8BWR4 Rhbdd2-201ENSMUST00000043707 4207 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Usp40Q8BWR4 Ccr4-202ENSMUST00000215425 1382 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Usp40Q8BWR4 Gm13812-201ENSMUST00000118061 1347 ntBASIC17.04■□□□□ 0.32
Usp40Q8BWR4 Gm13810-201ENSMUST00000118584 1347 ntBASIC17.04■□□□□ 0.32
Usp40Q8BWR4 Dnaaf2-201ENSMUST00000021356 3390 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Usp40Q8BWR4 Gatad2a-206ENSMUST00000212478 3622 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
Usp40Q8BWR4 Plod2-201ENSMUST00000070522 3649 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
Usp40Q8BWR4 Gm9062-201ENSMUST00000117712 727 ntBASIC17.04■□□□□ 0.32
Usp40Q8BWR4 Gm13611-201ENSMUST00000118269 318 ntBASIC17.04■□□□□ 0.32
Usp40Q8BWR4 Gm21859-201ENSMUST00000178424 1045 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
Usp40Q8BWR4 9330159M07Rik-202ENSMUST00000180783 1044 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
Usp40Q8BWR4 Gm28778-201ENSMUST00000190734 785 ntAPPRIS P1 TSL 3 BASIC17.04■□□□□ 0.32
Usp40Q8BWR4 Il17c-201ENSMUST00000050963 719 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Usp40Q8BWR4 Olfr117-201ENSMUST00000073636 954 ntAPPRIS P1 BASIC17.04■□□□□ 0.32
Usp40Q8BWR4 Olfr130-201ENSMUST00000087129 954 ntAPPRIS P1 BASIC17.04■□□□□ 0.32
Usp40Q8BWR4 Gm7049-201ENSMUST00000223520 1712 ntBASIC17.04■□□□□ 0.32
Usp40Q8BWR4 Palld-203ENSMUST00000121493 5445 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
Usp40Q8BWR4 Trim29-201ENSMUST00000034511 2735 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Usp40Q8BWR4 Fitm2-201ENSMUST00000109418 3967 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Usp40Q8BWR4 Smarcb1-202ENSMUST00000121304 1622 ntAPPRIS ALT1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Usp40Q8BWR4 4930554G24Rik-201ENSMUST00000126260 1603 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
Usp40Q8BWR4 Pax2-203ENSMUST00000174490 4358 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Usp40Q8BWR4 D830024N08Rik-201ENSMUST00000212132 2899 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
Usp40Q8BWR4 Tnn-201ENSMUST00000039178 5817 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Usp40Q8BWR4 Dpp6-201ENSMUST00000071500 3826 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
Usp40Q8BWR4 Gm17518-201ENSMUST00000181232 1346 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
Usp40Q8BWR4 Sfpq-201ENSMUST00000030623 3465 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Usp40Q8BWR4 Fam227a-204ENSMUST00000187519 2283 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Usp40Q8BWR4 Tfap2c-202ENSMUST00000099058 2985 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
Usp40Q8BWR4 Hnrnpk-232ENSMUST00000225674 2704 ntBASIC17.03■□□□□ 0.32
Usp40Q8BWR4 Ttc17-202ENSMUST00000094801 3408 ntTSL 5 BASIC17.03■□□□□ 0.32
Usp40Q8BWR4 Rbm14-201ENSMUST00000006625 3165 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Usp40Q8BWR4 AC163354.1-205ENSMUST00000223262 1511 ntTSL 5 BASIC17.03■□□□□ 0.32
Usp40Q8BWR4 Zscan29-205ENSMUST00000163766 3611 ntAPPRIS ALT2 TSL 5 BASIC17.03■□□□□ 0.32
Usp40Q8BWR4 Foxred2-201ENSMUST00000016696 4793 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Usp40Q8BWR4 Pmp22-203ENSMUST00000108701 723 ntAPPRIS P1 TSL 3 BASIC17.03■□□□□ 0.32
Usp40Q8BWR4 Ankrd29-202ENSMUST00000122408 850 ntTSL 5 BASIC17.03■□□□□ 0.32
Usp40Q8BWR4 Bcas3os2-201ENSMUST00000134305 661 ntTSL 5 BASIC17.03■□□□□ 0.32
Usp40Q8BWR4 1700001G11Rik-203ENSMUST00000153646 764 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
Usp40Q8BWR4 Lmo3-202ENSMUST00000161450 1048 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
Usp40Q8BWR4 Smpd4-223ENSMUST00000172182 516 ntTSL 3 BASIC17.03■□□□□ 0.32
Usp40Q8BWR4 Chtf8-203ENSMUST00000176090 615 ntTSL 5 BASIC17.03■□□□□ 0.32
Usp40Q8BWR4 1110002L01Rik-203ENSMUST00000179637 586 ntTSL 5 BASIC17.03■□□□□ 0.32
Usp40Q8BWR4 Gm27530-201ENSMUST00000184096 98 ntBASIC17.03■□□□□ 0.32
Usp40Q8BWR4 Gm34728-201ENSMUST00000201510 414 ntTSL 3 BASIC17.03■□□□□ 0.32
Usp40Q8BWR4 Gm45021-201ENSMUST00000204521 369 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
Usp40Q8BWR4 Wfdc21-201ENSMUST00000070832 434 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Usp40Q8BWR4 Gm10702-201ENSMUST00000098929 1268 ntBASIC17.03■□□□□ 0.32
Usp40Q8BWR4 Rnf150-201ENSMUST00000078525 9682 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Usp40Q8BWR4 Exosc1-202ENSMUST00000112123 1499 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
Usp40Q8BWR4 Cntfr-204ENSMUST00000102962 1926 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Usp40Q8BWR4 Map4k2-201ENSMUST00000025897 4644 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Usp40Q8BWR4 Rassf5-201ENSMUST00000027688 3485 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Usp40Q8BWR4 Otx2-209ENSMUST00000226501 2592 ntAPPRIS P1 BASIC17.03■□□□□ 0.32
Usp40Q8BWR4 Ccdc30-202ENSMUST00000063642 2534 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Usp40Q8BWR4 Zyx-202ENSMUST00000164375 3188 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
Usp40Q8BWR4 Wtap-201ENSMUST00000007007 2051 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Retrieved 100 of 76,532 protein–RNA pairs in 31 ms