Protein–RNA interactions for Protein: Q07563

Col17a1, Collagen alpha-1(XVII) chain, mousemouse

Predictions only

Length 1,470 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col17a1Q07563 9530085P06Rik-201ENSMUST00000182121 827 ntBASIC18.75■□□□□ 0.59
Col17a1Q07563 Ap5z1-202ENSMUST00000196055 2965 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
Col17a1Q07563 Gm39091-201ENSMUST00000206189 553 ntTSL 2 BASIC18.75■□□□□ 0.59
Col17a1Q07563 Gm45113-201ENSMUST00000207518 165 ntBASIC18.75■□□□□ 0.59
Col17a1Q07563 Ly86-201ENSMUST00000021860 1134 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Col17a1Q07563 Gm7525-201ENSMUST00000219425 454 ntBASIC18.75■□□□□ 0.59
Col17a1Q07563 Ctrl-201ENSMUST00000034368 879 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Col17a1Q07563 Ift43-201ENSMUST00000054565 773 ntAPPRIS P2 TSL 1 (best) BASIC18.75■□□□□ 0.59
Col17a1Q07563 Sesn1-202ENSMUST00000099931 3809 ntAPPRIS ALT1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Col17a1Q07563 Zfp318-204ENSMUST00000138127 3936 ntAPPRIS ALT2 TSL 5 BASIC18.75■□□□□ 0.59
Col17a1Q07563 Gm13871-202ENSMUST00000107319 1324 ntAPPRIS P2 TSL 1 (best) BASIC18.75■□□□□ 0.59
Col17a1Q07563 Gm11757-202ENSMUST00000107321 1324 ntAPPRIS P2 TSL 1 (best) BASIC18.75■□□□□ 0.59
Col17a1Q07563 Gstm3-201ENSMUST00000004136 1311 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Col17a1Q07563 Plut-202ENSMUST00000174285 1444 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
Col17a1Q07563 Cabp7-201ENSMUST00000009219 2628 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Col17a1Q07563 Gtf2ird1-224ENSMUST00000202280 3052 ntAPPRIS ALT2 TSL 5 BASIC18.75■□□□□ 0.59
Col17a1Q07563 Camsap3-201ENSMUST00000057028 4450 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.59
Col17a1Q07563 Rbms3-201ENSMUST00000044901 1983 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
Col17a1Q07563 Lipo3-202ENSMUST00000112508 2839 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Col17a1Q07563 Col18a1-202ENSMUST00000081654 5063 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
Col17a1Q07563 Mir1190-201ENSMUST00000116925 96 ntBASIC18.74■□□□□ 0.59
Col17a1Q07563 Gzmc-201ENSMUST00000015585 894 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Col17a1Q07563 Spdye4c-203ENSMUST00000178601 1020 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Col17a1Q07563 Gm18711-201ENSMUST00000199341 750 ntBASIC18.74■□□□□ 0.59
Col17a1Q07563 Gm43106-201ENSMUST00000199485 637 ntBASIC18.74■□□□□ 0.59
Col17a1Q07563 Gm43966-201ENSMUST00000203301 612 ntBASIC18.74■□□□□ 0.59
Col17a1Q07563 Gm8268-201ENSMUST00000209683 458 ntBASIC18.74■□□□□ 0.59
Col17a1Q07563 Eef1akmt1-201ENSMUST00000022518 880 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Col17a1Q07563 Cep170b-201ENSMUST00000092279 3817 ntTSL 5 BASIC18.74■□□□□ 0.59
Col17a1Q07563 Asgr1-202ENSMUST00000092959 1308 ntAPPRIS P3 TSL 2 BASIC18.74■□□□□ 0.59
Col17a1Q07563 Klhdc10-206ENSMUST00000144272 1387 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
Col17a1Q07563 Mpp1-202ENSMUST00000114091 1558 ntTSL 2 BASIC18.74■□□□□ 0.59
Col17a1Q07563 4930563E18Rik-201ENSMUST00000180948 1553 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
Col17a1Q07563 Lrrc58-201ENSMUST00000078717 8604 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Col17a1Q07563 Slc23a4-201ENSMUST00000044387 2175 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
Col17a1Q07563 Coch-201ENSMUST00000085412 2456 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Col17a1Q07563 Foxa1-201ENSMUST00000044380 3191 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Col17a1Q07563 Fam184a-201ENSMUST00000020003 4164 ntAPPRIS P1 TSL 5 BASIC18.73■□□□□ 0.59
Col17a1Q07563 Slc43a1-203ENSMUST00000111625 2487 ntAPPRIS P4 TSL 1 (best) BASIC18.73■□□□□ 0.59
Col17a1Q07563 Kif3a-201ENSMUST00000057330 2290 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Col17a1Q07563 Slc2a4-203ENSMUST00000141837 1776 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Col17a1Q07563 Gabarapl2-201ENSMUST00000034428 1677 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Col17a1Q07563 1110059E24Rik-201ENSMUST00000038830 1614 ntAPPRIS P2 TSL 1 (best) BASIC18.73■□□□□ 0.59
Col17a1Q07563 Gm15519-201ENSMUST00000120088 1566 ntBASIC18.73■□□□□ 0.59
Col17a1Q07563 Smim24-201ENSMUST00000105322 901 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Col17a1Q07563 Gm25872-201ENSMUST00000177784 100 ntBASIC18.73■□□□□ 0.59
Col17a1Q07563 Gm4895-201ENSMUST00000181646 1137 ntBASIC18.73■□□□□ 0.59
Col17a1Q07563 Gm27168-201ENSMUST00000183394 361 ntTSL 3 BASIC18.73■□□□□ 0.59
Col17a1Q07563 Gpx1-204ENSMUST00000193987 653 ntTSL 3 BASIC18.73■□□□□ 0.59
Col17a1Q07563 Gm29918-201ENSMUST00000205635 138 ntTSL 5 BASIC18.73■□□□□ 0.59
Col17a1Q07563 CT571271.1-201ENSMUST00000227071 670 ntBASIC18.73■□□□□ 0.59
Col17a1Q07563 Olfr1313-201ENSMUST00000099599 938 ntAPPRIS P1 BASIC18.73■□□□□ 0.59
Col17a1Q07563 4631405J19Rik-201ENSMUST00000099699 1225 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Col17a1Q07563 Brd7-201ENSMUST00000034085 3625 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Col17a1Q07563 Lrp11-203ENSMUST00000130590 3220 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
Col17a1Q07563 Chd5-202ENSMUST00000030775 9486 ntAPPRIS P3 TSL 5 BASIC18.73■□□□□ 0.59
Col17a1Q07563 Duxf3-202ENSMUST00000176875 2025 ntAPPRIS P1 BASIC18.73■□□□□ 0.59
Col17a1Q07563 Lrrc57-203ENSMUST00000102498 1901 ntAPPRIS P1 TSL 5 BASIC18.73■□□□□ 0.59
Col17a1Q07563 Larp4b-201ENSMUST00000091829 5720 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Col17a1Q07563 Msi1-208ENSMUST00000150779 3133 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Col17a1Q07563 Dedd-202ENSMUST00000097467 1606 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Col17a1Q07563 Map1b-203ENSMUST00000223725 2669 ntBASIC18.73■□□□□ 0.59
Col17a1Q07563 Camsap2-201ENSMUST00000048309 7823 ntAPPRIS P3 TSL 5 BASIC18.73■□□□□ 0.59
Col17a1Q07563 Hectd3-201ENSMUST00000050067 4583 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Col17a1Q07563 Gpsm1-203ENSMUST00000078616 3127 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Col17a1Q07563 Gm44891-201ENSMUST00000208817 2223 ntBASIC18.72■□□□□ 0.59
Col17a1Q07563 Ptpre-207ENSMUST00000211140 5753 ntAPPRIS P3 TSL 1 (best) BASIC18.72■□□□□ 0.59
Col17a1Q07563 Zfp784-201ENSMUST00000062428 2153 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Col17a1Q07563 Trbv31-201ENSMUST00000103300 334 ntAPPRIS ALT2 BASIC18.72■□□□□ 0.59
Col17a1Q07563 Gm24231-201ENSMUST00000104315 133 ntBASIC18.72■□□□□ 0.59
Col17a1Q07563 Gm12129-201ENSMUST00000120104 1147 ntBASIC18.72■□□□□ 0.59
Col17a1Q07563 4930557F10Rik-201ENSMUST00000155432 630 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Col17a1Q07563 Rps19-ps10-201ENSMUST00000159750 435 ntBASIC18.72■□□□□ 0.59
Col17a1Q07563 Cfap73-201ENSMUST00000177908 921 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
Col17a1Q07563 Gm26610-201ENSMUST00000181529 1024 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Col17a1Q07563 Gm7572-201ENSMUST00000182616 766 ntBASIC18.72■□□□□ 0.59
Col17a1Q07563 Olfr335-ps-201ENSMUST00000223545 939 ntAPPRIS P1 BASIC18.72■□□□□ 0.59
Col17a1Q07563 AC129017.2-201ENSMUST00000226118 1284 ntBASIC18.72■□□□□ 0.59
Col17a1Q07563 AC121567.1-201ENSMUST00000227213 842 ntBASIC18.72■□□□□ 0.59
Col17a1Q07563 Myoz2-201ENSMUST00000029761 1181 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Col17a1Q07563 Mfge8-202ENSMUST00000107409 2008 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
Col17a1Q07563 Psen2-201ENSMUST00000010753 2004 ntAPPRIS P2 TSL 1 (best) BASIC18.72■□□□□ 0.59
Col17a1Q07563 Abl1-201ENSMUST00000028190 5794 ntAPPRIS P3 TSL 1 (best) BASIC18.72■□□□□ 0.59
Col17a1Q07563 Ociad2-201ENSMUST00000087195 2554 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Col17a1Q07563 CT025610.1-201ENSMUST00000224552 1786 ntBASIC18.72■□□□□ 0.59
Col17a1Q07563 Casc4-203ENSMUST00000089915 3475 ntTSL 2 BASIC18.72■□□□□ 0.59
Col17a1Q07563 Ccndbp1-202ENSMUST00000099488 1595 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
Col17a1Q07563 Rbm11-203ENSMUST00000114253 2699 ntAPPRIS P2 TSL 1 (best) BASIC18.72■□□□□ 0.59
Col17a1Q07563 Fbxw11-203ENSMUST00000109366 3821 ntAPPRIS ALT1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Col17a1Q07563 Kcna1-202ENSMUST00000203094 3150 ntAPPRIS P1 BASIC18.72■□□□□ 0.59
Col17a1Q07563 Axin2-202ENSMUST00000106711 2551 ntAPPRIS ALT2 TSL 5 BASIC18.72■□□□□ 0.59
Col17a1Q07563 Enpp5-201ENSMUST00000024756 2534 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Col17a1Q07563 Gm42970-201ENSMUST00000196407 1352 ntBASIC18.72■□□□□ 0.59
Col17a1Q07563 Klk1b5-201ENSMUST00000074359 1391 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Col17a1Q07563 Ces1h-201ENSMUST00000145041 1870 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
Col17a1Q07563 Atf7-202ENSMUST00000108828 2887 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
Col17a1Q07563 Trav12-3-201ENSMUST00000103657 442 ntAPPRIS P1 BASIC18.71■□□□□ 0.59
Col17a1Q07563 Hmgcll1-202ENSMUST00000117981 1189 ntTSL 5 BASIC18.71■□□□□ 0.59
Col17a1Q07563 Olfr1267-ps1-201ENSMUST00000118957 930 ntAPPRIS P1 BASIC18.71■□□□□ 0.59
Col17a1Q07563 Gm12052-201ENSMUST00000142151 933 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
Retrieved 100 of 76,532 protein–RNA pairs in 32.9 ms