Protein–RNA interactions for Protein: Q00780

Col8a1, Collagen alpha-1(VIII) chain, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col8a1Q00780 Ighv5-2-201ENSMUST00000103442 350 ntAPPRIS ALT2 BASIC10.68□□□□□ -0.7
Col8a1Q00780 Gosr2-202ENSMUST00000107013 1044 ntTSL 2 BASIC10.68□□□□□ -0.7
Col8a1Q00780 Lyzl6-202ENSMUST00000107014 802 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
Col8a1Q00780 Gm6161-201ENSMUST00000121942 1102 ntBASIC10.68□□□□□ -0.7
Col8a1Q00780 Hnrnpa3-207ENSMUST00000164947 1074 ntAPPRIS ALT2 TSL 5 BASIC10.68□□□□□ -0.7
Col8a1Q00780 Gm17231-202ENSMUST00000165858 663 ntTSL 5 BASIC10.68□□□□□ -0.7
Col8a1Q00780 U2af1l4-215ENSMUST00000166257 546 ntTSL 5 BASIC10.68□□□□□ -0.7
Col8a1Q00780 Gm6153-201ENSMUST00000172004 1058 ntBASIC10.68□□□□□ -0.7
Col8a1Q00780 Slc2a4rg-ps-202ENSMUST00000176590 1143 ntBASIC10.68□□□□□ -0.7
Col8a1Q00780 Gm9242-201ENSMUST00000177820 1074 ntAPPRIS P1 BASIC10.68□□□□□ -0.7
Col8a1Q00780 Mir6546-201ENSMUST00000184460 62 ntBASIC10.68□□□□□ -0.7
Col8a1Q00780 Gm28324-201ENSMUST00000187913 264 ntBASIC10.68□□□□□ -0.7
Col8a1Q00780 Gm5641-202ENSMUST00000198699 1080 ntBASIC10.68□□□□□ -0.7
Col8a1Q00780 Fgf5-202ENSMUST00000200059 600 ntTSL 1 (best) BASIC10.68□□□□□ -0.7
Col8a1Q00780 Nras-208ENSMUST00000200069 831 ntAPPRIS P1 TSL 2 BASIC10.68□□□□□ -0.7
Col8a1Q00780 3830422I06Rik-201ENSMUST00000200199 1181 ntBASIC10.68□□□□□ -0.7
Col8a1Q00780 Gm35822-201ENSMUST00000204954 562 ntTSL 3 BASIC10.68□□□□□ -0.7
Col8a1Q00780 Gm45598-202ENSMUST00000210719 986 ntBASIC10.68□□□□□ -0.7
Col8a1Q00780 AC159462.1-201ENSMUST00000214822 687 ntTSL 5 BASIC10.68□□□□□ -0.7
Col8a1Q00780 AC154176.1-201ENSMUST00000225897 220 ntBASIC10.68□□□□□ -0.7
Col8a1Q00780 Mrpl30-201ENSMUST00000027256 969 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
Col8a1Q00780 Nmur1-201ENSMUST00000027440 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC10.68□□□□□ -0.7
Col8a1Q00780 Dnaaf2-201ENSMUST00000021356 3390 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
Col8a1Q00780 Spata5-209ENSMUST00000198968 2916 ntAPPRIS ALT2 TSL 1 (best) BASIC10.68□□□□□ -0.7
Col8a1Q00780 AC122197.2-201ENSMUST00000219196 1635 ntBASIC10.68□□□□□ -0.7
Col8a1Q00780 AW209491-202ENSMUST00000178289 2035 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
Col8a1Q00780 Samd5-201ENSMUST00000100070 6818 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
Col8a1Q00780 Kdm3a-214ENSMUST00000207023 4753 ntAPPRIS P1 TSL 5 BASIC10.68□□□□□ -0.7
Col8a1Q00780 Hk2-204ENSMUST00000170833 2792 ntTSL 5 BASIC10.68□□□□□ -0.7
Col8a1Q00780 Evi5l-202ENSMUST00000176072 3932 ntAPPRIS ALT2 TSL 5 BASIC10.68□□□□□ -0.7
Col8a1Q00780 Prkcd-203ENSMUST00000112203 1927 ntTSL 1 (best) BASIC10.68□□□□□ -0.7
Col8a1Q00780 Phactr2-201ENSMUST00000079698 1934 ntAPPRIS ALT2 TSL 5 BASIC10.68□□□□□ -0.7
Col8a1Q00780 Slc35d1-203ENSMUST00000150285 4242 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
Col8a1Q00780 Scara5-201ENSMUST00000022610 3794 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
Col8a1Q00780 Esam-201ENSMUST00000002011 1865 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
Col8a1Q00780 Cdc42ep2-201ENSMUST00000055458 1491 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
Col8a1Q00780 Metap2-206ENSMUST00000180840 2551 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
Col8a1Q00780 Pkp3-202ENSMUST00000106039 2919 ntAPPRIS ALT2 TSL 1 (best) BASIC10.68□□□□□ -0.7
Col8a1Q00780 Gm17029-202ENSMUST00000146124 2899 ntTSL 1 (best) BASIC10.67□□□□□ -0.7
Col8a1Q00780 Sema6c-201ENSMUST00000090821 3933 ntAPPRIS P3 TSL 5 BASIC10.67□□□□□ -0.7
Col8a1Q00780 Galns-203ENSMUST00000212319 2111 ntTSL 1 (best) BASIC10.67□□□□□ -0.7
Col8a1Q00780 Trim26-201ENSMUST00000053434 3198 ntAPPRIS P2 TSL 1 (best) BASIC10.67□□□□□ -0.7
Col8a1Q00780 5830432E09Rik-203ENSMUST00000210953 2428 ntTSL 1 (best) BASIC10.67□□□□□ -0.7
Col8a1Q00780 5330406M23Rik-201ENSMUST00000195672 2094 ntBASIC10.67□□□□□ -0.7
Col8a1Q00780 Mthfsd-210ENSMUST00000139782 1366 ntTSL 5 BASIC10.67□□□□□ -0.7
Col8a1Q00780 Ngef-201ENSMUST00000027477 2746 ntAPPRIS ALT2 TSL 1 (best) BASIC10.67□□□□□ -0.7
Col8a1Q00780 Farsb-202ENSMUST00000170217 2036 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
Col8a1Q00780 Mfap3l-202ENSMUST00000160719 6335 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
Col8a1Q00780 Nr3c1-201ENSMUST00000025300 4989 ntAPPRIS P2 TSL 1 (best) BASIC10.67□□□□□ -0.7
Col8a1Q00780 2900069G24Rik-201ENSMUST00000192780 1311 ntBASIC10.67□□□□□ -0.7
Col8a1Q00780 Gm36635-201ENSMUST00000221152 1332 ntTSL 5 BASIC10.67□□□□□ -0.7
Col8a1Q00780 Mecr-201ENSMUST00000030742 1337 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
Col8a1Q00780 Rnf214-201ENSMUST00000058720 3964 ntAPPRIS P3 TSL 1 (best) BASIC10.67□□□□□ -0.7
Col8a1Q00780 Asap1-218ENSMUST00000177374 4582 ntAPPRIS P3 TSL 1 (best) BASIC10.67□□□□□ -0.7
Col8a1Q00780 Cngb1-202ENSMUST00000119870 6189 ntAPPRIS P2 TSL 1 (best) BASIC10.67□□□□□ -0.7
Col8a1Q00780 Tmem169-201ENSMUST00000027380 2928 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
Col8a1Q00780 Ap2m1-201ENSMUST00000007216 2937 ntAPPRIS P3 TSL 5 BASIC10.67□□□□□ -0.7
Col8a1Q00780 Mcm9-206ENSMUST00000220007 3513 ntTSL 1 (best) BASIC10.67□□□□□ -0.7
Col8a1Q00780 Zbtb16-201ENSMUST00000093852 5114 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
Col8a1Q00780 Mir680-2-201ENSMUST00000102163 110 ntBASIC10.67□□□□□ -0.7
Col8a1Q00780 Gm23251-201ENSMUST00000103773 110 ntBASIC10.67□□□□□ -0.7
Col8a1Q00780 Fam53b-205ENSMUST00000106166 1270 ntTSL 1 (best) BASIC10.67□□□□□ -0.7
Col8a1Q00780 S100a16-206ENSMUST00000107335 926 ntAPPRIS P1 TSL 5 BASIC10.67□□□□□ -0.7
Col8a1Q00780 Cspp1-202ENSMUST00000117415 1272 ntTSL 1 (best) BASIC10.67□□□□□ -0.7
Col8a1Q00780 Gm14999-201ENSMUST00000121039 624 ntBASIC10.67□□□□□ -0.7
Col8a1Q00780 Gm14832-201ENSMUST00000121289 322 ntBASIC10.67□□□□□ -0.7
Col8a1Q00780 Gm28071-201ENSMUST00000190355 478 ntBASIC10.67□□□□□ -0.7
Col8a1Q00780 Gm19166-201ENSMUST00000196041 1063 ntBASIC10.67□□□□□ -0.7
Col8a1Q00780 Gm38411-201ENSMUST00000197971 941 ntTSL 1 (best) BASIC10.67□□□□□ -0.7
Col8a1Q00780 Gm43416-201ENSMUST00000201916 1015 ntBASIC10.67□□□□□ -0.7
Col8a1Q00780 Gm45184-201ENSMUST00000206354 955 ntTSL 5 BASIC10.67□□□□□ -0.7
Col8a1Q00780 C330004P14Rik-201ENSMUST00000218833 628 ntTSL 1 (best) BASIC10.67□□□□□ -0.7
Col8a1Q00780 Pebp4-201ENSMUST00000022678 1079 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
Col8a1Q00780 Gm1821-202ENSMUST00000227415 750 ntBASIC10.67□□□□□ -0.7
Col8a1Q00780 Rab13-201ENSMUST00000065418 1107 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
Col8a1Q00780 Cad-206ENSMUST00000201838 3153 ntTSL 1 (best) BASIC10.67□□□□□ -0.7
Col8a1Q00780 Emx2os-201ENSMUST00000136990 5023 ntTSL 1 (best) BASIC10.67□□□□□ -0.7
Col8a1Q00780 Ptger3-201ENSMUST00000041175 3148 ntAPPRIS P2 TSL 1 (best) BASIC10.67□□□□□ -0.7
Col8a1Q00780 Csk-209ENSMUST00000217314 2162 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
Col8a1Q00780 Obsl1-201ENSMUST00000113565 3379 ntTSL 1 (best) BASIC10.67□□□□□ -0.7
Col8a1Q00780 Pja1-202ENSMUST00000113790 2108 ntAPPRIS ALT2 TSL 2 BASIC10.67□□□□□ -0.7
Col8a1Q00780 Prrt3-201ENSMUST00000101059 3304 ntAPPRIS P3 TSL 1 (best) BASIC10.67□□□□□ -0.7
Col8a1Q00780 Ankrd13c-201ENSMUST00000040787 3903 ntAPPRIS P1 TSL 5 BASIC10.67□□□□□ -0.7
Col8a1Q00780 Lrrc8a-202ENSMUST00000113654 4194 ntAPPRIS P1 TSL 5 BASIC10.67□□□□□ -0.7
Col8a1Q00780 Bmp3-201ENSMUST00000031278 6548 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
Col8a1Q00780 Abra-201ENSMUST00000054742 1762 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
Col8a1Q00780 Pcnx-201ENSMUST00000021567 12139 ntAPPRIS P2 TSL 2 BASIC10.67□□□□□ -0.7
Col8a1Q00780 Ahcyl2-201ENSMUST00000064872 2019 ntAPPRIS ALT1 TSL 5 BASIC10.67□□□□□ -0.7
Col8a1Q00780 Arvcf-201ENSMUST00000090103 4620 ntAPPRIS P3 TSL 1 (best) BASIC10.67□□□□□ -0.7
Col8a1Q00780 Scfd2-203ENSMUST00000113542 2279 ntTSL 1 (best) BASIC10.67□□□□□ -0.7
Col8a1Q00780 Gm2155-201ENSMUST00000181581 1974 ntTSL 1 (best) BASIC10.66□□□□□ -0.7
Col8a1Q00780 Sall4-202ENSMUST00000075044 2534 ntTSL 1 (best) BASIC10.66□□□□□ -0.7
Col8a1Q00780 9930014A18Rik-201ENSMUST00000180730 3074 ntTSL 1 (best) BASIC10.66□□□□□ -0.7
Col8a1Q00780 Ccdc71-201ENSMUST00000061209 3092 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
Col8a1Q00780 Zfp28-201ENSMUST00000081022 4447 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
Col8a1Q00780 Mark2-201ENSMUST00000025921 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC10.66□□□□□ -0.7
Col8a1Q00780 Pgghg-201ENSMUST00000079403 2981 ntAPPRIS P2 TSL 1 (best) BASIC10.66□□□□□ -0.7
Col8a1Q00780 Hid1-201ENSMUST00000044152 3236 ntAPPRIS ALT1 TSL 1 (best) BASIC10.66□□□□□ -0.7
Col8a1Q00780 Rlbp1-202ENSMUST00000179243 2142 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
Col8a1Q00780 B430212C06Rik-205ENSMUST00000145081 2623 ntTSL 1 (best) BASIC10.66□□□□□ -0.7
Retrieved 100 of 76,532 protein–RNA pairs in 66.4 ms