Protein–RNA interactions for Protein: P53564

Cux1, Homeobox protein cut-like 1, mousemouse

Predictions only

Length 1,515 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cux1P53564 Gm13937-201ENSMUST00000121000 988 ntBASIC18.89■□□□□ 0.61
Cux1P53564 Gm13830-203ENSMUST00000148916 247 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
Cux1P53564 Tlx1-202ENSMUST00000174617 806 ntTSL 5 BASIC18.89■□□□□ 0.61
Cux1P53564 Gm29499-201ENSMUST00000189151 486 ntBASIC18.89■□□□□ 0.61
Cux1P53564 Gm28329-201ENSMUST00000191208 689 ntBASIC18.89■□□□□ 0.61
Cux1P53564 Gm29171-201ENSMUST00000191397 486 ntBASIC18.89■□□□□ 0.61
Cux1P53564 Gm38151-201ENSMUST00000195085 289 ntBASIC18.89■□□□□ 0.61
Cux1P53564 Ptger1-201ENSMUST00000019608 4694 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Cux1P53564 Gm33201-201ENSMUST00000204791 855 ntTSL 3 BASIC18.89■□□□□ 0.61
Cux1P53564 Ndufb4-201ENSMUST00000023514 971 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Cux1P53564 Ccpg1-206ENSMUST00000140675 2839 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
Cux1P53564 Zmynd11-206ENSMUST00000110637 3770 ntTSL 5 BASIC18.89■□□□□ 0.61
Cux1P53564 Prrt3-204ENSMUST00000205075 1956 ntAPPRIS ALT2 TSL 2 BASIC18.89■□□□□ 0.61
Cux1P53564 Bckdhb-205ENSMUST00000190166 1398 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.61
Cux1P53564 Prss47-202ENSMUST00000203968 1353 ntAPPRIS P5 TSL 5 BASIC18.89■□□□□ 0.61
Cux1P53564 Ip6k3-201ENSMUST00000025046 2307 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Cux1P53564 Dnajc1-209ENSMUST00000166495 5497 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Cux1P53564 Hsph1-211ENSMUST00000202361 3802 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Cux1P53564 Map3k5-202ENSMUST00000120259 4289 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
Cux1P53564 Ska1-202ENSMUST00000177604 2605 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Cux1P53564 Zcchc18-202ENSMUST00000101227 2045 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Cux1P53564 Dbf4-204ENSMUST00000168500 2000 ntTSL 5 BASIC18.88■□□□□ 0.61
Cux1P53564 Cdk11b-201ENSMUST00000067081 2595 ntAPPRIS P3 TSL 1 (best) BASIC18.88■□□□□ 0.61
Cux1P53564 Usp42-201ENSMUST00000053287 5151 ntAPPRIS P1 TSL 5 BASIC18.88■□□□□ 0.61
Cux1P53564 Arl11-202ENSMUST00000224727 2095 ntAPPRIS P1 BASIC18.88■□□□□ 0.61
Cux1P53564 Ncald-211ENSMUST00000168992 3538 ntAPPRIS P1 TSL 5 BASIC18.88■□□□□ 0.61
Cux1P53564 Fbxo39-201ENSMUST00000108504 1708 ntAPPRIS P1 TSL 5 BASIC18.88■□□□□ 0.61
Cux1P53564 Hdgfl2-212ENSMUST00000226053 2270 ntAPPRIS P2 BASIC18.88■□□□□ 0.61
Cux1P53564 Nudt1-205ENSMUST00000110827 744 ntAPPRIS P1 TSL 5 BASIC18.88■□□□□ 0.61
Cux1P53564 Rpl35a-204ENSMUST00000115078 500 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Cux1P53564 Gm12419-201ENSMUST00000116649 636 ntBASIC18.88■□□□□ 0.61
Cux1P53564 Gm16397-201ENSMUST00000122201 494 ntBASIC18.88■□□□□ 0.61
Cux1P53564 Gm14199-201ENSMUST00000130021 495 ntTSL 2 BASIC18.88■□□□□ 0.61
Cux1P53564 Gm23153-201ENSMUST00000175323 313 ntBASIC18.88■□□□□ 0.61
Cux1P53564 Krtap19-9b-201ENSMUST00000077715 461 ntAPPRIS P1 BASIC18.88■□□□□ 0.61
Cux1P53564 Gm6903-201ENSMUST00000160509 1366 ntBASIC18.88■□□□□ 0.61
Cux1P53564 Ism2-201ENSMUST00000051601 1350 ntTSL 5 BASIC18.88■□□□□ 0.61
Cux1P53564 Wscd2-201ENSMUST00000094452 4302 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Cux1P53564 Zbtb7b-201ENSMUST00000029677 3851 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Cux1P53564 Fbxo34-205ENSMUST00000168833 2993 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
Cux1P53564 CT009489.1-201ENSMUST00000227740 1893 ntBASIC18.88■□□□□ 0.61
Cux1P53564 Dph6-201ENSMUST00000028640 2632 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
Cux1P53564 Dnmt3b-204ENSMUST00000088976 4130 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
Cux1P53564 Zp1-201ENSMUST00000025641 1963 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Cux1P53564 Smyd1-203ENSMUST00000114188 2064 ntTSL 5 BASIC18.87■□□□□ 0.61
Cux1P53564 Hspa9-201ENSMUST00000025217 3049 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Cux1P53564 Cfap52-201ENSMUST00000021287 2199 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Cux1P53564 Rnf183-203ENSMUST00000107455 1432 ntAPPRIS P1 TSL 3 BASIC18.87■□□□□ 0.61
Cux1P53564 Pdyn-201ENSMUST00000028883 2386 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Cux1P53564 Rab11fip2-201ENSMUST00000051996 4482 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
Cux1P53564 Ripor2-205ENSMUST00000110384 5608 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
Cux1P53564 M6pr-202ENSMUST00000112610 2539 ntAPPRIS P1 TSL 5 BASIC18.87■□□□□ 0.61
Cux1P53564 Ccdc30-202ENSMUST00000063642 2534 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Cux1P53564 Kcnh7-202ENSMUST00000112452 2849 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
Cux1P53564 Gm44805-202ENSMUST00000150569 587 ntAPPRIS P1 TSL 2 BASIC18.87■□□□□ 0.61
Cux1P53564 Rps19-ps9-201ENSMUST00000161787 414 ntBASIC18.87■□□□□ 0.61
Cux1P53564 Isl1-202ENSMUST00000176044 1198 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
Cux1P53564 Wdr53-204ENSMUST00000178573 1153 ntAPPRIS P1 TSL 5 BASIC18.87■□□□□ 0.61
Cux1P53564 Gm45113-201ENSMUST00000207518 165 ntBASIC18.87■□□□□ 0.61
Cux1P53564 Gm40578-201ENSMUST00000220837 390 ntTSL 2 BASIC18.87■□□□□ 0.61
Cux1P53564 Gm32635-201ENSMUST00000221493 1162 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
Cux1P53564 CT025551.1-201ENSMUST00000223996 692 ntBASIC18.87■□□□□ 0.61
Cux1P53564 Odf3-201ENSMUST00000026555 1128 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Cux1P53564 Nop10-201ENSMUST00000028553 1109 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Cux1P53564 Cmbl-201ENSMUST00000070918 1155 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Cux1P53564 4930588G17Rik-201ENSMUST00000208075 1474 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
Cux1P53564 Steap3-204ENSMUST00000112643 2873 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
Cux1P53564 Ints5-201ENSMUST00000096249 3294 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Cux1P53564 Fam160b1-201ENSMUST00000036407 5630 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Cux1P53564 Gpatch4-203ENSMUST00000193398 2210 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Cux1P53564 AC160405.1-201ENSMUST00000218207 1545 ntBASIC18.87■□□□□ 0.61
Cux1P53564 Rcan2-202ENSMUST00000044895 3363 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
Cux1P53564 Rnf123-201ENSMUST00000047746 4722 ntAPPRIS ALT2 TSL 5 BASIC18.87■□□□□ 0.61
Cux1P53564 Ankrd34a-201ENSMUST00000058943 2583 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Cux1P53564 Trpm1-221ENSMUST00000206706 2350 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
Cux1P53564 Ldb3-204ENSMUST00000064098 2299 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
Cux1P53564 Gm6189-201ENSMUST00000164487 2082 ntBASIC18.86■□□□□ 0.61
Cux1P53564 Adam10-201ENSMUST00000067880 4593 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Cux1P53564 Riox2-206ENSMUST00000160571 2244 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Cux1P53564 Gm15207-201ENSMUST00000119259 442 ntBASIC18.86■□□□□ 0.61
Cux1P53564 Gm15856-201ENSMUST00000124853 1162 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
Cux1P53564 Tmem40-206ENSMUST00000170625 843 ntAPPRIS ALT2 TSL 3 BASIC18.86■□□□□ 0.61
Cux1P53564 Gm4654-201ENSMUST00000183305 982 ntBASIC18.86■□□□□ 0.61
Cux1P53564 Gtf3c6-201ENSMUST00000019982 887 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
Cux1P53564 Gm42657-201ENSMUST00000201746 211 ntBASIC18.86■□□□□ 0.61
Cux1P53564 Cmtm2a-203ENSMUST00000212492 635 ntAPPRIS ALT2 TSL 3 BASIC18.86■□□□□ 0.61
Cux1P53564 Gm29208-205ENSMUST00000214517 1056 ntTSL 5 BASIC18.86■□□□□ 0.61
Cux1P53564 Neo1-201ENSMUST00000068664 7379 ntAPPRIS P2 TSL 1 (best) BASIC18.86■□□□□ 0.61
Cux1P53564 Madd-201ENSMUST00000066420 3753 ntAPPRIS ALT2 TSL 5 BASIC18.86■□□□□ 0.61
Cux1P53564 Dhx34-203ENSMUST00000119102 4310 ntAPPRIS ALT2 TSL 5 BASIC18.86■□□□□ 0.61
Cux1P53564 Zfc3h1-201ENSMUST00000036044 6957 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Cux1P53564 Kif11-201ENSMUST00000012587 4819 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Cux1P53564 Elfn2-201ENSMUST00000088592 4846 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Cux1P53564 Proser3-202ENSMUST00000108165 2466 ntAPPRIS P2 TSL 1 (best) BASIC18.86■□□□□ 0.61
Cux1P53564 AL732309.1-201ENSMUST00000228627 2045 ntAPPRIS P1 BASIC18.86■□□□□ 0.61
Cux1P53564 Rasgrp1-207ENSMUST00000178884 5104 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Cux1P53564 Ccdc157-202ENSMUST00000101626 5153 ntAPPRIS P3 TSL 1 (best) BASIC18.85■□□□□ 0.61
Cux1P53564 Dhx58-201ENSMUST00000017974 2412 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Cux1P53564 Gm5795-201ENSMUST00000100920 984 ntAPPRIS P2 TSL 5 BASIC18.85■□□□□ 0.61
Cux1P53564 Smim5-202ENSMUST00000142089 685 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Retrieved 100 of 76,532 protein–RNA pairs in 29.5 ms