Protein–RNA interactions for Protein: P39061

Col18a1, Collagen alpha-1(XVIII) chain, mousemouse

Predictions only

Length 1,774 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col18a1P39061 Fam219a-202ENSMUST00000108050 3321 ntTSL 5 BASIC16.12■□□□□ 0.17
Col18a1P39061 Alkbh5-201ENSMUST00000044250 5730 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Col18a1P39061 Gm43156-201ENSMUST00000202338 2127 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Col18a1P39061 Ttc23l-201ENSMUST00000022857 1931 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Col18a1P39061 Zfp1-201ENSMUST00000077791 1811 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
Col18a1P39061 Gm37348-201ENSMUST00000193104 1789 ntBASIC16.11■□□□□ 0.17
Col18a1P39061 Rita1-207ENSMUST00000177800 1668 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
Col18a1P39061 9930014A18Rik-201ENSMUST00000180730 3074 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Col18a1P39061 Gm43447-201ENSMUST00000198471 1535 ntBASIC16.11■□□□□ 0.17
Col18a1P39061 Gm10750-201ENSMUST00000099266 1506 ntAPPRIS P1 BASIC16.11■□□□□ 0.17
Col18a1P39061 Gm5939-201ENSMUST00000119613 2874 ntBASIC16.11■□□□□ 0.17
Col18a1P39061 Dnaaf1-201ENSMUST00000093100 2821 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Col18a1P39061 Tfe3-205ENSMUST00000115678 2658 ntTSL 5 BASIC16.11■□□□□ 0.17
Col18a1P39061 Mta1-202ENSMUST00000069690 2697 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
Col18a1P39061 Pdp1-205ENSMUST00000108301 2635 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Col18a1P39061 Trav13d-4-201ENSMUST00000103607 264 ntAPPRIS P1 BASIC16.11■□□□□ 0.17
Col18a1P39061 Gm15610-201ENSMUST00000120584 195 ntBASIC16.11■□□□□ 0.17
Col18a1P39061 Gm12681-201ENSMUST00000132337 700 ntTSL 3 BASIC16.11■□□□□ 0.17
Col18a1P39061 Gm4895-201ENSMUST00000181646 1137 ntBASIC16.11■□□□□ 0.17
Col18a1P39061 Trav13-4-dv7-202ENSMUST00000184905 264 ntAPPRIS P1 BASIC16.11■□□□□ 0.17
Col18a1P39061 Gm44216-201ENSMUST00000203942 157 ntBASIC16.11■□□□□ 0.17
Col18a1P39061 Gm7238-201ENSMUST00000206467 973 ntBASIC16.11■□□□□ 0.17
Col18a1P39061 Gm45094-201ENSMUST00000207013 617 ntBASIC16.11■□□□□ 0.17
Col18a1P39061 AC162932.1-201ENSMUST00000219209 872 ntBASIC16.11■□□□□ 0.17
Col18a1P39061 Gm6564-201ENSMUST00000075377 619 ntBASIC16.11■□□□□ 0.17
Col18a1P39061 Defa3-201ENSMUST00000098893 410 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Col18a1P39061 Twnk-201ENSMUST00000026227 3488 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Col18a1P39061 Slc5a11-207ENSMUST00000167299 2022 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
Col18a1P39061 Prdm4-207ENSMUST00000220032 3962 ntTSL 5 BASIC16.11■□□□□ 0.17
Col18a1P39061 Sema6c-201ENSMUST00000090821 3933 ntAPPRIS P3 TSL 5 BASIC16.11■□□□□ 0.17
Col18a1P39061 Hnrnpf-210ENSMUST00000180341 1922 ntAPPRIS P1 BASIC16.11■□□□□ 0.17
Col18a1P39061 Ikzf1-203ENSMUST00000065433 4697 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
Col18a1P39061 Bbs7-203ENSMUST00000108156 2687 ntAPPRIS P2 TSL 1 (best) BASIC16.11■□□□□ 0.17
Col18a1P39061 Mterf3-201ENSMUST00000021991 1479 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Col18a1P39061 Cfap100-207ENSMUST00000165673 2072 ntAPPRIS P2 TSL 5 BASIC16.11■□□□□ 0.17
Col18a1P39061 Cacna2d2-203ENSMUST00000164988 5542 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
Col18a1P39061 Hcfc2-201ENSMUST00000020478 3422 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
Col18a1P39061 Plekhh1-201ENSMUST00000039928 6439 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Col18a1P39061 Baz1a-205ENSMUST00000173433 5788 ntAPPRIS P2 TSL 5 BASIC16.1■□□□□ 0.17
Col18a1P39061 Rtbdn-201ENSMUST00000067472 1908 ntAPPRIS P2 TSL 1 (best) BASIC16.1■□□□□ 0.17
Col18a1P39061 Mir432-201ENSMUST00000157230 75 ntBASIC16.1■□□□□ 0.17
Col18a1P39061 Gm42953-201ENSMUST00000199363 581 ntTSL 3 BASIC16.1■□□□□ 0.17
Col18a1P39061 AC122860.1-201ENSMUST00000217669 773 ntTSL 3 BASIC16.1■□□□□ 0.17
Col18a1P39061 Gm26670-202ENSMUST00000226862 340 ntBASIC16.1■□□□□ 0.17
Col18a1P39061 Taar7f-201ENSMUST00000071691 1077 ntAPPRIS P1 BASIC16.1■□□□□ 0.17
Col18a1P39061 Taar7d-201ENSMUST00000092657 1077 ntAPPRIS P1 BASIC16.1■□□□□ 0.17
Col18a1P39061 Gm28372-201ENSMUST00000188900 1876 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
Col18a1P39061 Tcf4-252ENSMUST00000202477 1873 ntTSL 5 BASIC16.1■□□□□ 0.17
Col18a1P39061 Gm29683-203ENSMUST00000209071 2488 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Col18a1P39061 Itsn1-201ENSMUST00000056482 5364 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Col18a1P39061 Ntn1-201ENSMUST00000021284 5738 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
Col18a1P39061 Taf6-202ENSMUST00000110936 2308 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Col18a1P39061 Lgals12-202ENSMUST00000099729 2757 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Col18a1P39061 Cdk12-203ENSMUST00000107539 5912 ntAPPRIS ALT2 TSL 5 BASIC16.1■□□□□ 0.17
Col18a1P39061 Col26a1-201ENSMUST00000057497 2724 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
Col18a1P39061 Sfrp1-201ENSMUST00000033952 4372 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Col18a1P39061 Mocs1-204ENSMUST00000173033 2588 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Col18a1P39061 Gm15196-201ENSMUST00000121406 482 ntBASIC16.1■□□□□ 0.17
Col18a1P39061 Tnfrsf14-201ENSMUST00000123514 1018 ntAPPRIS P2 TSL 1 (best) BASIC16.1■□□□□ 0.17
Col18a1P39061 Aamdc-207ENSMUST00000138060 467 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Col18a1P39061 9130204K15Rik-202ENSMUST00000150312 696 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Col18a1P39061 Gm20822-201ENSMUST00000165756 687 ntAPPRIS P1 BASIC16.1■□□□□ 0.17
Col18a1P39061 Gm20828-201ENSMUST00000170889 687 ntAPPRIS P1 BASIC16.1■□□□□ 0.17
Col18a1P39061 Gm7069-201ENSMUST00000182418 1008 ntBASIC16.1■□□□□ 0.17
Col18a1P39061 Tmem242-203ENSMUST00000188282 822 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Col18a1P39061 Proz-203ENSMUST00000211363 984 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Col18a1P39061 Hddc2-201ENSMUST00000000304 858 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Col18a1P39061 Rpl35a-201ENSMUST00000078804 491 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Col18a1P39061 Chodl-201ENSMUST00000023568 2535 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Col18a1P39061 Rpl22-204ENSMUST00000139685 2051 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Col18a1P39061 Adgrl1-207ENSMUST00000141158 8181 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Col18a1P39061 Gm8155-201ENSMUST00000216363 1612 ntBASIC16.1■□□□□ 0.17
Col18a1P39061 5830432E09Rik-203ENSMUST00000210953 2428 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Col18a1P39061 Fbxl19-202ENSMUST00000186116 3641 ntTSL 5 BASIC16.1■□□□□ 0.17
Col18a1P39061 Caskin1-201ENSMUST00000024958 6172 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
Col18a1P39061 Tcim-201ENSMUST00000052622 1805 ntAPPRIS P1 BASIC16.09■□□□□ 0.17
Col18a1P39061 1190002N15Rik-201ENSMUST00000113028 3950 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Col18a1P39061 Os9-201ENSMUST00000080975 2458 ntAPPRIS P3 TSL 1 (best) BASIC16.09■□□□□ 0.17
Col18a1P39061 Ung-203ENSMUST00000112275 1733 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
Col18a1P39061 Bean1-206ENSMUST00000213077 1373 ntAPPRIS ALT2 TSL 3 BASIC16.09■□□□□ 0.17
Col18a1P39061 Acot3-201ENSMUST00000021653 3431 ntAPPRIS P3 TSL 1 (best) BASIC16.09■□□□□ 0.17
Col18a1P39061 Fam43a-201ENSMUST00000059078 3075 ntAPPRIS P1 BASIC16.09■□□□□ 0.17
Col18a1P39061 Gm8038-201ENSMUST00000164674 2044 ntBASIC16.09■□□□□ 0.17
Col18a1P39061 Ctnna2-205ENSMUST00000161846 4018 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
Col18a1P39061 4933438K21Rik-201ENSMUST00000175787 1693 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
Col18a1P39061 Tmem63b-201ENSMUST00000113523 3284 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Col18a1P39061 Slmap-212ENSMUST00000139075 4508 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
Col18a1P39061 Gabrr2-202ENSMUST00000108162 1933 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Col18a1P39061 Gm43951-201ENSMUST00000204457 2889 ntAPPRIS P1 BASIC16.09■□□□□ 0.17
Col18a1P39061 Gm5150-201ENSMUST00000108347 913 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Col18a1P39061 Gm13039-201ENSMUST00000118638 794 ntBASIC16.09■□□□□ 0.17
Col18a1P39061 Gm14255-201ENSMUST00000128846 248 ntTSL 5 BASIC16.09■□□□□ 0.17
Col18a1P39061 Gm9162-201ENSMUST00000182081 991 ntBASIC16.09■□□□□ 0.17
Col18a1P39061 Plac9a-203ENSMUST00000183725 439 ntTSL 3 BASIC16.09■□□□□ 0.17
Col18a1P39061 Plac9b-202ENSMUST00000183811 396 ntTSL 3 BASIC16.09■□□□□ 0.17
Col18a1P39061 AC142266.1-201ENSMUST00000228107 415 ntBASIC16.09■□□□□ 0.17
Col18a1P39061 Crygf-201ENSMUST00000027082 627 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Col18a1P39061 Fam25c-201ENSMUST00000052126 408 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Col18a1P39061 Acot13-201ENSMUST00000006900 721 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Col18a1P39061 Rhox8-201ENSMUST00000071885 1204 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Retrieved 100 of 76,532 protein–RNA pairs in 38.2 ms