Protein–RNA interactions for Protein: B1AR17

Chd3, Chromodomain helicase DNA-binding protein 3, mousemouse

Predictions only

Length 2,055 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd3B1AR17 Gm12968-201ENSMUST00000138291 1454 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Chd3B1AR17 Gm10782-202ENSMUST00000223775 1480 ntBASIC12.23□□□□□ -0.45
Chd3B1AR17 Dnajb5-204ENSMUST00000107973 2300 ntAPPRIS P2 TSL 1 (best) BASIC12.23□□□□□ -0.45
Chd3B1AR17 Dmrta1-201ENSMUST00000052478 4079 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Chd3B1AR17 Fam222b-201ENSMUST00000073705 3258 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Chd3B1AR17 Speg-201ENSMUST00000087122 10801 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Chd3B1AR17 Rhbdd2-201ENSMUST00000043707 4207 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Chd3B1AR17 Slc39a3-205ENSMUST00000168076 3461 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Chd3B1AR17 Cercam-201ENSMUST00000047521 2715 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Chd3B1AR17 Agt-201ENSMUST00000063278 1891 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Chd3B1AR17 4930588K23Rik-201ENSMUST00000156827 1963 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Chd3B1AR17 Hao1-201ENSMUST00000028704 2045 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Chd3B1AR17 Setx-201ENSMUST00000061578 10970 ntAPPRIS P1 TSL 5 BASIC12.23□□□□□ -0.45
Chd3B1AR17 5830432E09Rik-203ENSMUST00000210953 2428 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Chd3B1AR17 Ighv5-2-201ENSMUST00000103442 350 ntAPPRIS ALT2 BASIC12.23□□□□□ -0.45
Chd3B1AR17 Gm13442-201ENSMUST00000135749 663 ntTSL 3 BASIC12.23□□□□□ -0.45
Chd3B1AR17 Gm14286-201ENSMUST00000155674 464 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Chd3B1AR17 Gm23119-201ENSMUST00000158610 140 ntBASIC12.23□□□□□ -0.45
Chd3B1AR17 Fundc1-204ENSMUST00000176638 448 ntTSL 3 BASIC12.23□□□□□ -0.45
Chd3B1AR17 Gm44651-201ENSMUST00000207343 372 ntBASIC12.23□□□□□ -0.45
Chd3B1AR17 4933424G06Rik-204ENSMUST00000208994 1120 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Chd3B1AR17 Gm45433-201ENSMUST00000209386 247 ntBASIC12.23□□□□□ -0.45
Chd3B1AR17 5330413P13Rik-205ENSMUST00000210961 913 ntTSL 5 BASIC12.23□□□□□ -0.45
Chd3B1AR17 Gm18212-201ENSMUST00000211678 889 ntBASIC12.23□□□□□ -0.45
Chd3B1AR17 AC156504.2-201ENSMUST00000213800 711 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Chd3B1AR17 Kdelr1-205ENSMUST00000211716 1350 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Chd3B1AR17 Etl4-208ENSMUST00000114614 5898 ntAPPRIS ALT2 TSL 1 (best) BASIC12.23□□□□□ -0.45
Chd3B1AR17 1700030J22Rik-202ENSMUST00000213068 1482 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Chd3B1AR17 Pja1-204ENSMUST00000113797 1676 ntAPPRIS ALT2 TSL 2 BASIC12.23□□□□□ -0.45
Chd3B1AR17 Celsr3-207ENSMUST00000213524 9930 ntAPPRIS ALT2 TSL 1 (best) BASIC12.23□□□□□ -0.45
Chd3B1AR17 Zeb2-212ENSMUST00000176438 9124 ntAPPRIS P2 TSL 5 BASIC12.23□□□□□ -0.45
Chd3B1AR17 Atp2b2-203ENSMUST00000101045 8877 ntAPPRIS P3 TSL 1 (best) BASIC12.22□□□□□ -0.45
Chd3B1AR17 Ap3m2-201ENSMUST00000163739 3417 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Chd3B1AR17 Ces2e-202ENSMUST00000109410 1999 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Chd3B1AR17 Sec61g-203ENSMUST00000109643 1862 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Chd3B1AR17 Smad4-202ENSMUST00000114939 2233 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Chd3B1AR17 Cbs-203ENSMUST00000118504 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC12.22□□□□□ -0.45
Chd3B1AR17 A430060F13Rik-201ENSMUST00000124176 378 ntBASIC12.22□□□□□ -0.45
Chd3B1AR17 Gm14966-202ENSMUST00000129675 649 ntTSL 2 BASIC12.22□□□□□ -0.45
Chd3B1AR17 Fez1-208ENSMUST00000163816 1285 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Chd3B1AR17 Wac-216ENSMUST00000171486 1608 ntTSL 5 BASIC12.22□□□□□ -0.45
Chd3B1AR17 Malat1-204ENSMUST00000173523 656 ntTSL 3 BASIC12.22□□□□□ -0.45
Chd3B1AR17 Adtrp-204ENSMUST00000179758 1046 ntAPPRIS ALT2 TSL 5 BASIC12.22□□□□□ -0.45
Chd3B1AR17 2610037D02Rik-201ENSMUST00000180852 2449 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
Chd3B1AR17 Ptpn7-203ENSMUST00000187985 1990 ntAPPRIS P1 TSL 5 BASIC12.22□□□□□ -0.45
Chd3B1AR17 Polr2i-201ENSMUST00000019882 819 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Chd3B1AR17 Zfp1-203ENSMUST00000212072 1930 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
Chd3B1AR17 Nppc-201ENSMUST00000027449 1042 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Chd3B1AR17 Secisbp2-201ENSMUST00000040117 3328 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Chd3B1AR17 Trhr2-201ENSMUST00000044123 1340 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Chd3B1AR17 Erg-201ENSMUST00000077773 2232 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
Chd3B1AR17 Mybphl-201ENSMUST00000090563 1276 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Chd3B1AR17 Cbarp-214ENSMUST00000169546 2980 ntAPPRIS ALT2 TSL 5 BASIC12.22□□□□□ -0.45
Chd3B1AR17 Celf1-214ENSMUST00000177642 7806 ntAPPRIS ALT1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Chd3B1AR17 Sec14l5-201ENSMUST00000165810 2337 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Chd3B1AR17 Gm2420-201ENSMUST00000119864 2149 ntBASIC12.22□□□□□ -0.45
Chd3B1AR17 Zdbf2-202ENSMUST00000114132 12629 ntAPPRIS P1 TSL 5 BASIC12.22□□□□□ -0.45
Chd3B1AR17 Bcat2-203ENSMUST00000209204 2081 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
Chd3B1AR17 Rtbdn-201ENSMUST00000067472 1908 ntAPPRIS P2 TSL 1 (best) BASIC12.22□□□□□ -0.45
Chd3B1AR17 Ssr1-203ENSMUST00000225246 1825 ntBASIC12.22□□□□□ -0.45
Chd3B1AR17 Ankrd61-201ENSMUST00000079624 1720 ntAPPRIS ALT2 TSL 1 (best) BASIC12.22□□□□□ -0.45
Chd3B1AR17 Gm5884-201ENSMUST00000036712 1479 ntBASIC12.22□□□□□ -0.45
Chd3B1AR17 Cd72-204ENSMUST00000107925 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC12.22□□□□□ -0.45
Chd3B1AR17 Rbm39-203ENSMUST00000109587 2810 ntAPPRIS P3 TSL 1 (best) BASIC12.22□□□□□ -0.45
Chd3B1AR17 Ntsr1-202ENSMUST00000170448 2594 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Chd3B1AR17 Rps10-203ENSMUST00000114882 614 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Chd3B1AR17 Zscan10-203ENSMUST00000117606 891 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
Chd3B1AR17 Gm14999-201ENSMUST00000121039 624 ntBASIC12.22□□□□□ -0.45
Chd3B1AR17 Naa60-207ENSMUST00000150655 1166 ntAPPRIS P1 TSL 2 BASIC12.22□□□□□ -0.45
Chd3B1AR17 Gm16099-202ENSMUST00000151873 660 ntTSL 5 BASIC12.22□□□□□ -0.45
Chd3B1AR17 Gm17105-201ENSMUST00000163715 652 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
Chd3B1AR17 Magohb-205ENSMUST00000173837 897 ntTSL 5 BASIC12.22□□□□□ -0.45
Chd3B1AR17 Ldlrad2-201ENSMUST00000178923 429 ntAPPRIS P1 TSL 5 BASIC12.22□□□□□ -0.45
Chd3B1AR17 Gm32999-201ENSMUST00000192693 562 ntBASIC12.22□□□□□ -0.45
Chd3B1AR17 Washc3-201ENSMUST00000020248 1052 ntAPPRIS P3 TSL 1 (best) BASIC12.22□□□□□ -0.45
Chd3B1AR17 Gm42800-201ENSMUST00000202494 733 ntTSL 5 BASIC12.22□□□□□ -0.45
Chd3B1AR17 Cacng1-201ENSMUST00000021065 1249 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Chd3B1AR17 Rsph1-201ENSMUST00000024832 1164 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Chd3B1AR17 U2af1l4-201ENSMUST00000043273 884 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Chd3B1AR17 Cryba2-201ENSMUST00000006721 720 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Chd3B1AR17 Lrmda-201ENSMUST00000075639 908 ntAPPRIS P2 TSL 1 (best) BASIC12.22□□□□□ -0.45
Chd3B1AR17 C1qtnf1-202ENSMUST00000106286 2512 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Chd3B1AR17 C1qtnf1-201ENSMUST00000017590 2532 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Chd3B1AR17 Adcyap1r1-201ENSMUST00000070736 3695 ntAPPRIS P4 TSL 1 (best) BASIC12.22□□□□□ -0.45
Chd3B1AR17 Mbp-205ENSMUST00000091789 4797 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
Chd3B1AR17 Prpf40a-206ENSMUST00000209364 2833 ntAPPRIS ALT2 TSL 5 BASIC12.21□□□□□ -0.45
Chd3B1AR17 Otud4-203ENSMUST00000173286 7213 ntAPPRIS ALT2 TSL 1 (best) BASIC12.21□□□□□ -0.45
Chd3B1AR17 Cog7-203ENSMUST00000205438 3355 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
Chd3B1AR17 4930550L24Rik-201ENSMUST00000062542 1572 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Chd3B1AR17 Gm853-201ENSMUST00000023884 2314 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Chd3B1AR17 Sirpa-214ENSMUST00000179001 3812 ntAPPRIS P3 TSL 5 BASIC12.21□□□□□ -0.45
Chd3B1AR17 Fyttd1-201ENSMUST00000023489 4312 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Chd3B1AR17 Retreg1-206ENSMUST00000228306 1430 ntBASIC12.21□□□□□ -0.45
Chd3B1AR17 Ppig-201ENSMUST00000040915 6245 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Chd3B1AR17 D630033O11Rik-204ENSMUST00000210588 1358 ntTSL 5 BASIC12.21□□□□□ -0.45
Chd3B1AR17 Ccdc162-208ENSMUST00000179614 2739 ntTSL 5 BASIC12.21□□□□□ -0.45
Chd3B1AR17 Dgkg-201ENSMUST00000023578 2725 ntAPPRIS ALT2 TSL 1 (best) BASIC12.21□□□□□ -0.45
Chd3B1AR17 Camta2-203ENSMUST00000108544 4632 ntAPPRIS ALT2 TSL 1 (best) BASIC12.21□□□□□ -0.45
Chd3B1AR17 Fcgr1-201ENSMUST00000029748 2589 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Chd3B1AR17 Hsbp1l1-201ENSMUST00000166219 1251 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Retrieved 100 of 76,532 protein–RNA pairs in 28.7 ms