Protein–RNA interactions for Protein: Q9JKS4

Ldb3, LIM domain-binding protein 3, mousemouse

Known RBP Predictions only

Length 723 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ldb3Q9JKS4 Rab17-201ENSMUST00000027529 1831 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
Ldb3Q9JKS4 Usp19-210ENSMUST00000193678 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC11.34□□□□□ -0.59
Ldb3Q9JKS4 Cyp2d26-201ENSMUST00000006094 1645 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
Ldb3Q9JKS4 Alx4-202ENSMUST00000111254 7056 ntTSL 1 (best) BASIC11.34□□□□□ -0.59
Ldb3Q9JKS4 Smg7-203ENSMUST00000111836 3928 ntAPPRIS ALT2 TSL 1 (best) BASIC11.34□□□□□ -0.59
Ldb3Q9JKS4 Synpo-209ENSMUST00000143275 5040 ntAPPRIS ALT2 TSL 5 BASIC11.34□□□□□ -0.59
Ldb3Q9JKS4 Arfgap1-204ENSMUST00000108861 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC11.34□□□□□ -0.59
Ldb3Q9JKS4 Klhl18-201ENSMUST00000068025 4530 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
Ldb3Q9JKS4 Poc1b-201ENSMUST00000020113 2862 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
Ldb3Q9JKS4 Grid2ip-203ENSMUST00000120825 3865 ntTSL 5 BASIC11.34□□□□□ -0.59
Ldb3Q9JKS4 2810429I04Rik-203ENSMUST00000181708 4769 ntTSL 1 (best) BASIC11.33□□□□□ -0.59
Ldb3Q9JKS4 Nmt2-202ENSMUST00000091504 1676 ntTSL 5 BASIC11.33□□□□□ -0.6
Ldb3Q9JKS4 Rab31-201ENSMUST00000070673 3476 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Ldb3Q9JKS4 Zfp369-203ENSMUST00000130799 1580 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
Ldb3Q9JKS4 Slc5a11-207ENSMUST00000167299 2022 ntAPPRIS P1 TSL 5 BASIC11.33□□□□□ -0.6
Ldb3Q9JKS4 Map4k1-203ENSMUST00000208227 2720 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
Ldb3Q9JKS4 Map4k1-201ENSMUST00000085835 2724 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Ldb3Q9JKS4 Mettl8-202ENSMUST00000100037 2254 ntAPPRIS ALT2 TSL 1 (best) BASIC11.33□□□□□ -0.6
Ldb3Q9JKS4 Jmjd8-205ENSMUST00000133595 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC11.33□□□□□ -0.6
Ldb3Q9JKS4 Alpk3-201ENSMUST00000107348 6369 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Ldb3Q9JKS4 Srl-201ENSMUST00000023161 5000 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
Ldb3Q9JKS4 Lcor-201ENSMUST00000067795 4810 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Ldb3Q9JKS4 5730409E04Rik-202ENSMUST00000164362 2855 ntAPPRIS P1 TSL 3 BASIC11.33□□□□□ -0.6
Ldb3Q9JKS4 BC055324-202ENSMUST00000097493 3217 ntAPPRIS ALT2 TSL 1 (best) BASIC11.33□□□□□ -0.6
Ldb3Q9JKS4 Cacna2d1-201ENSMUST00000039370 3933 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
Ldb3Q9JKS4 Fastkd3-201ENSMUST00000051784 2421 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Ldb3Q9JKS4 Bcl9l-201ENSMUST00000074989 5339 ntAPPRIS P2 TSL 1 (best) BASIC11.33□□□□□ -0.6
Ldb3Q9JKS4 Ighv8-9-201ENSMUST00000103533 301 ntAPPRIS P1 BASIC11.33□□□□□ -0.6
Ldb3Q9JKS4 Ighv8-13-201ENSMUST00000103542 303 ntAPPRIS ALT2 BASIC11.33□□□□□ -0.6
Ldb3Q9JKS4 Park7-202ENSMUST00000105673 919 ntAPPRIS P1 TSL 5 BASIC11.33□□□□□ -0.6
Ldb3Q9JKS4 Nmi-202ENSMUST00000112705 1130 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Ldb3Q9JKS4 Gm13297-201ENSMUST00000120205 934 ntBASIC11.33□□□□□ -0.6
Ldb3Q9JKS4 Gm14999-201ENSMUST00000121039 624 ntBASIC11.33□□□□□ -0.6
Ldb3Q9JKS4 Gm13563-201ENSMUST00000125518 643 ntTSL 3 BASIC11.33□□□□□ -0.6
Ldb3Q9JKS4 Gm12050-201ENSMUST00000127483 615 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
Ldb3Q9JKS4 Gm14091-201ENSMUST00000133534 874 ntTSL 2 BASIC11.33□□□□□ -0.6
Ldb3Q9JKS4 Bcas1os1-201ENSMUST00000133586 1239 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
Ldb3Q9JKS4 Gm12953-201ENSMUST00000138426 751 ntTSL 2 BASIC11.33□□□□□ -0.6
Ldb3Q9JKS4 Klk11-202ENSMUST00000171458 1260 ntAPPRIS P3 TSL 2 BASIC11.33□□□□□ -0.6
Ldb3Q9JKS4 Gm8494-201ENSMUST00000178171 1233 ntBASIC11.33□□□□□ -0.6
Ldb3Q9JKS4 Gm5597-201ENSMUST00000182353 1193 ntBASIC11.33□□□□□ -0.6
Ldb3Q9JKS4 Mocs2-215ENSMUST00000184335 646 ntTSL 5 BASIC11.33□□□□□ -0.6
Ldb3Q9JKS4 Gm8176-201ENSMUST00000191297 1099 ntBASIC11.33□□□□□ -0.6
Ldb3Q9JKS4 Gm37489-201ENSMUST00000191883 159 ntBASIC11.33□□□□□ -0.6
Ldb3Q9JKS4 Gm19710-201ENSMUST00000200257 640 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
Ldb3Q9JKS4 Gm44974-201ENSMUST00000206387 1279 ntBASIC11.33□□□□□ -0.6
Ldb3Q9JKS4 Gm19963-201ENSMUST00000208413 1255 ntBASIC11.33□□□□□ -0.6
Ldb3Q9JKS4 Gm18935-201ENSMUST00000212692 664 ntBASIC11.33□□□□□ -0.6
Ldb3Q9JKS4 Gm36634-201ENSMUST00000218356 1259 ntTSL 3 BASIC11.33□□□□□ -0.6
Ldb3Q9JKS4 AC144543.1-201ENSMUST00000221840 1064 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
Ldb3Q9JKS4 Gm9899-201ENSMUST00000065519 555 ntBASIC11.33□□□□□ -0.6
Ldb3Q9JKS4 Acyp1-202ENSMUST00000065913 448 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
Ldb3Q9JKS4 Gm6502-202ENSMUST00000097478 1218 ntTSL 5 BASIC11.33□□□□□ -0.6
Ldb3Q9JKS4 Gm43721-201ENSMUST00000199677 2313 ntBASIC11.33□□□□□ -0.6
Ldb3Q9JKS4 Fip1l1-201ENSMUST00000080164 4673 ntAPPRIS P3 TSL 1 (best) BASIC11.33□□□□□ -0.6
Ldb3Q9JKS4 Brf2-201ENSMUST00000033877 1899 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Ldb3Q9JKS4 Agrn-201ENSMUST00000071248 4831 ntTSL 5 BASIC11.33□□□□□ -0.6
Ldb3Q9JKS4 Nrg1-201ENSMUST00000073884 2452 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
Ldb3Q9JKS4 Dennd4b-201ENSMUST00000098914 5423 ntAPPRIS P2 TSL 1 (best) BASIC11.33□□□□□ -0.6
Ldb3Q9JKS4 Kcnip4-207ENSMUST00000176191 2116 ntTSL 5 BASIC11.33□□□□□ -0.6
Ldb3Q9JKS4 Arhgap33-207ENSMUST00000208538 4372 ntAPPRIS P3 TSL 1 (best) BASIC11.33□□□□□ -0.6
Ldb3Q9JKS4 Msh6-201ENSMUST00000005503 4254 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Ldb3Q9JKS4 Slc14a1-203ENSMUST00000160639 2047 ntAPPRIS P3 TSL 1 (best) BASIC11.33□□□□□ -0.6
Ldb3Q9JKS4 Phyhd1-212ENSMUST00000154647 1678 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Ldb3Q9JKS4 Kifc1-201ENSMUST00000114361 2260 ntAPPRIS ALT2 TSL 5 BASIC11.33□□□□□ -0.6
Ldb3Q9JKS4 Tacc3-202ENSMUST00000079534 2899 ntAPPRIS P3 TSL 1 (best) BASIC11.33□□□□□ -0.6
Ldb3Q9JKS4 Myh13-202ENSMUST00000108684 6062 ntAPPRIS P1 TSL 5 BASIC11.32□□□□□ -0.6
Ldb3Q9JKS4 Ptn-202ENSMUST00000201321 2558 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
Ldb3Q9JKS4 Aldoa-203ENSMUST00000106348 1460 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Ldb3Q9JKS4 Ppl-201ENSMUST00000035672 6277 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Ldb3Q9JKS4 Slc9b1-201ENSMUST00000078568 2248 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Ldb3Q9JKS4 Atp8a1-201ENSMUST00000037380 8178 ntAPPRIS P4 TSL 1 (best) BASIC11.32□□□□□ -0.6
Ldb3Q9JKS4 Taok2-202ENSMUST00000117394 4985 ntAPPRIS P4 TSL 1 (best) BASIC11.32□□□□□ -0.6
Ldb3Q9JKS4 Slc39a8-206ENSMUST00000180196 3383 ntAPPRIS P1 TSL 5 BASIC11.32□□□□□ -0.6
Ldb3Q9JKS4 Gimap3-202ENSMUST00000204036 2145 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Ldb3Q9JKS4 Tacr2-201ENSMUST00000020278 2258 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Ldb3Q9JKS4 Cdc37l1-207ENSMUST00000225210 4163 ntAPPRIS ALT2 BASIC11.32□□□□□ -0.6
Ldb3Q9JKS4 Gm7114-201ENSMUST00000190159 1789 ntBASIC11.32□□□□□ -0.6
Ldb3Q9JKS4 1520401A03Rik-205ENSMUST00000201734 2660 ntAPPRIS P5 TSL 5 BASIC11.32□□□□□ -0.6
Ldb3Q9JKS4 Gm25214-201ENSMUST00000104573 129 ntBASIC11.32□□□□□ -0.6
Ldb3Q9JKS4 6030468B19Rik-201ENSMUST00000106331 1071 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Ldb3Q9JKS4 Thoc6-204ENSMUST00000115490 1157 ntTSL 5 BASIC11.32□□□□□ -0.6
Ldb3Q9JKS4 Gm15370-201ENSMUST00000117158 253 ntBASIC11.32□□□□□ -0.6
Ldb3Q9JKS4 4933407E24Rik-201ENSMUST00000133499 969 ntTSL 2 BASIC11.32□□□□□ -0.6
Ldb3Q9JKS4 Gm27206-201ENSMUST00000154038 979 ntTSL 5 BASIC11.32□□□□□ -0.6
Ldb3Q9JKS4 Gm25043-201ENSMUST00000158604 212 ntBASIC11.32□□□□□ -0.6
Ldb3Q9JKS4 Pitx2-204ENSMUST00000172645 915 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
Ldb3Q9JKS4 Gm2310-201ENSMUST00000179217 1131 ntAPPRIS P1 TSL 5 BASIC11.32□□□□□ -0.6
Ldb3Q9JKS4 Gm27023-201ENSMUST00000182372 285 ntBASIC11.32□□□□□ -0.6
Ldb3Q9JKS4 Anapc16-205ENSMUST00000182912 566 ntTSL 2 BASIC11.32□□□□□ -0.6
Ldb3Q9JKS4 Olfr1414-202ENSMUST00000189174 1159 ntAPPRIS P1 TSL 3 BASIC11.32□□□□□ -0.6
Ldb3Q9JKS4 2310047D07Rik-201ENSMUST00000189493 735 ntTSL 3 BASIC11.32□□□□□ -0.6
Ldb3Q9JKS4 Gm42920-201ENSMUST00000196616 409 ntTSL 3 BASIC11.32□□□□□ -0.6
Ldb3Q9JKS4 Gm29154-230ENSMUST00000215044 1165 ntTSL 5 BASIC11.32□□□□□ -0.6
Ldb3Q9JKS4 AC132384.14-201ENSMUST00000219346 1147 ntBASIC11.32□□□□□ -0.6
Ldb3Q9JKS4 Trex2-201ENSMUST00000033738 1017 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Ldb3Q9JKS4 Nr0b2-201ENSMUST00000042706 1132 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Ldb3Q9JKS4 Dnal4-202ENSMUST00000069877 1011 ntTSL 5 BASIC11.32□□□□□ -0.6
Ldb3Q9JKS4 Bcar3-201ENSMUST00000029766 3311 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Ldb3Q9JKS4 Rusc1-201ENSMUST00000052539 3316 ntAPPRIS ALT2 TSL 1 (best) BASIC11.32□□□□□ -0.6
Retrieved 100 of 76,532 protein–RNA pairs in 45.9 ms