Protein–RNA interactions for Protein: Q9ESN2

Trim39, E3 ubiquitin-protein ligase TRIM39, mousemouse

Predictions only

Length 488 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim39Q9ESN2 Bckdha-201ENSMUST00000071329 1899 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Trim39Q9ESN2 Fxr1-204ENSMUST00000197694 2129 ntAPPRIS P1 TSL 5 BASIC11.78□□□□□ -0.52
Trim39Q9ESN2 Cldn9-201ENSMUST00000085989 1435 ntAPPRIS P1 BASIC11.78□□□□□ -0.52
Trim39Q9ESN2 Fam217b-201ENSMUST00000094251 4541 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Trim39Q9ESN2 2010315B03Rik-202ENSMUST00000177714 2623 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Trim39Q9ESN2 Camk2b-206ENSMUST00000101585 1650 ntTSL 5 BASIC11.78□□□□□ -0.52
Trim39Q9ESN2 Nexmif-202ENSMUST00000087879 10891 ntAPPRIS P2 TSL 1 (best) BASIC11.78□□□□□ -0.52
Trim39Q9ESN2 Rbm11-203ENSMUST00000114253 2699 ntAPPRIS P2 TSL 1 (best) BASIC11.78□□□□□ -0.52
Trim39Q9ESN2 Galntl6-208ENSMUST00000204128 5680 ntAPPRIS P1 TSL 5 BASIC11.78□□□□□ -0.52
Trim39Q9ESN2 Zfp772-201ENSMUST00000074455 2777 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Trim39Q9ESN2 Ptprt-203ENSMUST00000109443 12112 ntAPPRIS ALT2 TSL 1 (best) BASIC11.78□□□□□ -0.52
Trim39Q9ESN2 Lta4h-201ENSMUST00000016033 2029 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Trim39Q9ESN2 Gm40377-201ENSMUST00000204604 2015 ntBASIC11.78□□□□□ -0.52
Trim39Q9ESN2 Ankrd61-203ENSMUST00000110718 1774 ntAPPRIS ALT2 TSL 1 (best) BASIC11.78□□□□□ -0.52
Trim39Q9ESN2 Fbxw17-201ENSMUST00000046974 1798 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Trim39Q9ESN2 Trpm7-202ENSMUST00000103224 7107 ntAPPRIS P3 TSL 1 (best) BASIC11.78□□□□□ -0.52
Trim39Q9ESN2 Prss45-201ENSMUST00000011391 1232 ntAPPRIS P2 TSL 1 (best) BASIC11.78□□□□□ -0.52
Trim39Q9ESN2 Dctn6-202ENSMUST00000117243 962 ntTSL 3 BASIC11.78□□□□□ -0.52
Trim39Q9ESN2 Gm13612-201ENSMUST00000119276 390 ntBASIC11.78□□□□□ -0.52
Trim39Q9ESN2 Mrps10-202ENSMUST00000119841 1113 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
Trim39Q9ESN2 Gm12960-201ENSMUST00000120017 1066 ntBASIC11.78□□□□□ -0.52
Trim39Q9ESN2 Pou2f3-rs1-201ENSMUST00000120271 1046 ntBASIC11.78□□□□□ -0.52
Trim39Q9ESN2 Ift20-203ENSMUST00000128788 1141 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Trim39Q9ESN2 Gm29152-201ENSMUST00000189284 325 ntTSL 5 BASIC11.78□□□□□ -0.52
Trim39Q9ESN2 Gm43240-201ENSMUST00000198543 630 ntTSL 3 BASIC11.78□□□□□ -0.52
Trim39Q9ESN2 Ociad1-210ENSMUST00000202250 800 ntTSL 2 BASIC11.78□□□□□ -0.52
Trim39Q9ESN2 B230112I24Rik-201ENSMUST00000203953 1229 ntBASIC11.78□□□□□ -0.52
Trim39Q9ESN2 Gm44064-201ENSMUST00000204964 1087 ntBASIC11.78□□□□□ -0.52
Trim39Q9ESN2 Gm7287-201ENSMUST00000205267 602 ntBASIC11.78□□□□□ -0.52
Trim39Q9ESN2 AC151971.1-201ENSMUST00000217329 993 ntTSL 5 BASIC11.78□□□□□ -0.52
Trim39Q9ESN2 AC087891.2-201ENSMUST00000219293 658 ntTSL 5 BASIC11.78□□□□□ -0.52
Trim39Q9ESN2 CT010486.3-201ENSMUST00000224555 811 ntBASIC11.78□□□□□ -0.52
Trim39Q9ESN2 Arhgef33-209ENSMUST00000225223 714 ntBASIC11.78□□□□□ -0.52
Trim39Q9ESN2 Kcnk9-201ENSMUST00000044624 1209 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Trim39Q9ESN2 Rhox2e-201ENSMUST00000072167 799 ntAPPRIS P1 TSL 5 BASIC11.78□□□□□ -0.52
Trim39Q9ESN2 Med8-203ENSMUST00000084319 1134 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
Trim39Q9ESN2 Set-202ENSMUST00000102866 2824 ntAPPRIS P3 TSL 1 (best) BASIC11.78□□□□□ -0.52
Trim39Q9ESN2 Ngly1-207ENSMUST00000224656 2329 ntAPPRIS ALT2 BASIC11.78□□□□□ -0.52
Trim39Q9ESN2 Rftn1-202ENSMUST00000113195 2385 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
Trim39Q9ESN2 Twnk-201ENSMUST00000026227 3488 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Trim39Q9ESN2 Tmem237-202ENSMUST00000094917 1869 ntAPPRIS P4 TSL 1 (best) BASIC11.78□□□□□ -0.52
Trim39Q9ESN2 Gm18983-201ENSMUST00000222884 2729 ntBASIC11.78□□□□□ -0.52
Trim39Q9ESN2 Klk6-203ENSMUST00000107968 1394 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Trim39Q9ESN2 Wfdc1-201ENSMUST00000024107 1371 ntAPPRIS P2 TSL 1 (best) BASIC11.78□□□□□ -0.52
Trim39Q9ESN2 Ehbp1l1-202ENSMUST00000075606 3572 ntAPPRIS ALT2 TSL 1 (best) BASIC11.78□□□□□ -0.52
Trim39Q9ESN2 Zfp207-201ENSMUST00000017567 2245 ntAPPRIS ALT1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Trim39Q9ESN2 Gm9816-201ENSMUST00000122292 1414 ntBASIC11.77□□□□□ -0.52
Trim39Q9ESN2 Gm26703-201ENSMUST00000181370 2864 ntTSL 1 (best) BASIC11.77□□□□□ -0.52
Trim39Q9ESN2 Ptgdr-201ENSMUST00000095959 3187 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.52
Trim39Q9ESN2 AC122371.1-201ENSMUST00000220876 1477 ntTSL 1 (best) BASIC11.77□□□□□ -0.52
Trim39Q9ESN2 Riox2-203ENSMUST00000120674 1753 ntTSL 1 (best) BASIC11.77□□□□□ -0.52
Trim39Q9ESN2 Lrrc30-201ENSMUST00000097290 1759 ntAPPRIS P1 BASIC11.77□□□□□ -0.52
Trim39Q9ESN2 Pianp-207ENSMUST00000162170 2053 ntAPPRIS P2 TSL 1 (best) BASIC11.77□□□□□ -0.52
Trim39Q9ESN2 Me3-202ENSMUST00000032856 4485 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.52
Trim39Q9ESN2 Pitpnm2-201ENSMUST00000086123 6620 ntAPPRIS P3 TSL 1 (best) BASIC11.77□□□□□ -0.52
Trim39Q9ESN2 Fmo1-202ENSMUST00000111518 1506 ntTSL 1 (best) BASIC11.77□□□□□ -0.52
Trim39Q9ESN2 Arhgap25-202ENSMUST00000101197 2493 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
Trim39Q9ESN2 Met-202ENSMUST00000115442 4663 ntAPPRIS P1 TSL 5 BASIC11.77□□□□□ -0.53
Trim39Q9ESN2 Tnip1-201ENSMUST00000018482 2810 ntAPPRIS P3 TSL 1 (best) BASIC11.77□□□□□ -0.53
Trim39Q9ESN2 Acoxl-202ENSMUST00000110344 1573 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
Trim39Q9ESN2 Cpa1-201ENSMUST00000031806 1583 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Trim39Q9ESN2 Gm35040-201ENSMUST00000206829 5094 ntTSL 2 BASIC11.77□□□□□ -0.53
Trim39Q9ESN2 Tssc4-202ENSMUST00000105920 895 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
Trim39Q9ESN2 Rhox2f-201ENSMUST00000115173 799 ntAPPRIS P1 TSL 5 BASIC11.77□□□□□ -0.53
Trim39Q9ESN2 Cd209g-201ENSMUST00000130372 1169 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Trim39Q9ESN2 Slc2a9-207ENSMUST00000143758 1296 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
Trim39Q9ESN2 2410003L11Rik-202ENSMUST00000145262 642 ntTSL 3 BASIC11.77□□□□□ -0.53
Trim39Q9ESN2 Cryaa-201ENSMUST00000019192 1176 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
Trim39Q9ESN2 Gm37436-201ENSMUST00000193842 1085 ntBASIC11.77□□□□□ -0.53
Trim39Q9ESN2 Gm44069-201ENSMUST00000204898 506 ntBASIC11.77□□□□□ -0.53
Trim39Q9ESN2 Gm7653-201ENSMUST00000214567 508 ntBASIC11.77□□□□□ -0.53
Trim39Q9ESN2 Gm35638-201ENSMUST00000220724 652 ntBASIC11.77□□□□□ -0.53
Trim39Q9ESN2 AC154276.1-201ENSMUST00000228874 1299 ntBASIC11.77□□□□□ -0.53
Trim39Q9ESN2 Rps15-201ENSMUST00000062674 572 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
Trim39Q9ESN2 Gm13199-201ENSMUST00000071016 747 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Trim39Q9ESN2 Cntnap4-201ENSMUST00000034225 4848 ntAPPRIS P2 TSL 1 (best) BASIC11.77□□□□□ -0.53
Trim39Q9ESN2 Grsf1-202ENSMUST00000113234 2286 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
Trim39Q9ESN2 Hoxb9-202ENSMUST00000174042 2269 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
Trim39Q9ESN2 Retsat-205ENSMUST00000176364 1647 ntTSL 5 BASIC11.77□□□□□ -0.53
Trim39Q9ESN2 Cpn2-201ENSMUST00000064856 4583 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Trim39Q9ESN2 Gm26735-201ENSMUST00000180992 2649 ntTSL 5 BASIC11.77□□□□□ -0.53
Trim39Q9ESN2 Hyal1-204ENSMUST00000144392 1332 ntTSL 5 BASIC11.77□□□□□ -0.53
Trim39Q9ESN2 Renbp-209ENSMUST00000155597 1310 ntAPPRIS ALT2 TSL 5 BASIC11.77□□□□□ -0.53
Trim39Q9ESN2 Mrvi1-202ENSMUST00000125758 5953 ntAPPRIS ALT2 TSL 2 BASIC11.77□□□□□ -0.53
Trim39Q9ESN2 Zfp526-201ENSMUST00000055604 3380 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Trim39Q9ESN2 Ndrg2-201ENSMUST00000004673 2099 ntAPPRIS P3 TSL 1 (best) BASIC11.77□□□□□ -0.53
Trim39Q9ESN2 Srr-202ENSMUST00000108447 3138 ntTSL 5 BASIC11.77□□□□□ -0.53
Trim39Q9ESN2 Arhgap20os-204ENSMUST00000152203 2113 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
Trim39Q9ESN2 Itgal-202ENSMUST00000117762 5222 ntAPPRIS ALT2 TSL 1 (best) BASIC11.76□□□□□ -0.53
Trim39Q9ESN2 Dsc2-202ENSMUST00000075214 4508 ntAPPRIS ALT2 TSL 5 BASIC11.76□□□□□ -0.53
Trim39Q9ESN2 AC122860.2-201ENSMUST00000217967 2671 ntBASIC11.76□□□□□ -0.53
Trim39Q9ESN2 Kdm4d-201ENSMUST00000058796 2695 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Trim39Q9ESN2 Tspan13-201ENSMUST00000020896 1932 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Trim39Q9ESN2 Tbc1d14-210ENSMUST00000140607 4649 ntAPPRIS P3 TSL 5 BASIC11.76□□□□□ -0.53
Trim39Q9ESN2 Grin1-206ENSMUST00000114314 3882 ntTSL 5 BASIC11.76□□□□□ -0.53
Trim39Q9ESN2 Cep128-210ENSMUST00000141429 4807 ntAPPRIS P2 TSL 1 (best) BASIC11.76□□□□□ -0.53
Trim39Q9ESN2 Zc3h12d-201ENSMUST00000039484 4092 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Trim39Q9ESN2 Dcun1d3-206ENSMUST00000207233 2917 ntAPPRIS P1 TSL 5 BASIC11.76□□□□□ -0.53
Trim39Q9ESN2 Setdb1-201ENSMUST00000015841 4658 ntAPPRIS P3 TSL 1 (best) BASIC11.76□□□□□ -0.53
Trim39Q9ESN2 Gm20652-201ENSMUST00000177314 383 ntTSL 2 BASIC11.76□□□□□ -0.53
Retrieved 100 of 76,532 protein–RNA pairs in 33.4 ms