Protein–RNA interactions for Protein: Q9ERG0

Lima1, LIM domain and actin-binding protein 1, mousemouse

Known RBP Predictions only

Length 753 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lima1Q9ERG0 Gm16202-201ENSMUST00000117532 544 ntBASIC12.35□□□□□ -0.43
Lima1Q9ERG0 Cpne8-201ENSMUST00000014777 697 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
Lima1Q9ERG0 1700092C10Rik-201ENSMUST00000172547 585 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
Lima1Q9ERG0 Smad7-204ENSMUST00000174411 769 ntTSL 5 BASIC12.35□□□□□ -0.43
Lima1Q9ERG0 Gm26602-201ENSMUST00000181321 285 ntAPPRIS P1 BASIC12.35□□□□□ -0.43
Lima1Q9ERG0 Gm29481-201ENSMUST00000189080 1049 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
Lima1Q9ERG0 Gm29152-201ENSMUST00000189284 325 ntTSL 5 BASIC12.35□□□□□ -0.43
Lima1Q9ERG0 Gm18916-201ENSMUST00000198264 1246 ntBASIC12.35□□□□□ -0.43
Lima1Q9ERG0 Gm35368-201ENSMUST00000209554 1244 ntTSL 5 BASIC12.35□□□□□ -0.43
Lima1Q9ERG0 CT030657.3-201ENSMUST00000222707 1200 ntBASIC12.35□□□□□ -0.43
Lima1Q9ERG0 Cript-201ENSMUST00000024959 1184 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Lima1Q9ERG0 Ifitm3-201ENSMUST00000026565 678 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Lima1Q9ERG0 Cracr2a-201ENSMUST00000071563 1094 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
Lima1Q9ERG0 Gm16372-201ENSMUST00000073088 450 ntBASIC12.35□□□□□ -0.43
Lima1Q9ERG0 AC160410.1-201ENSMUST00000219298 1972 ntBASIC12.35□□□□□ -0.43
Lima1Q9ERG0 Dcaf11-203ENSMUST00000117701 2311 ntAPPRIS ALT2 TSL 5 BASIC12.35□□□□□ -0.43
Lima1Q9ERG0 Syvn1-207ENSMUST00000156550 3363 ntAPPRIS ALT2 TSL 5 BASIC12.35□□□□□ -0.43
Lima1Q9ERG0 Hk1-205ENSMUST00000130422 2916 ntAPPRIS ALT2 TSL 5 BASIC12.35□□□□□ -0.43
Lima1Q9ERG0 Dnmt3c-201ENSMUST00000119996 2223 ntAPPRIS P1 BASIC12.35□□□□□ -0.43
Lima1Q9ERG0 Specc1-213ENSMUST00000202179 6676 ntAPPRIS ALT2 TSL 1 (best) BASIC12.35□□□□□ -0.43
Lima1Q9ERG0 Strip2-205ENSMUST00000151738 5281 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
Lima1Q9ERG0 Plaur-201ENSMUST00000002284 1506 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Lima1Q9ERG0 Alg12-201ENSMUST00000043087 1793 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
Lima1Q9ERG0 Epha5-206ENSMUST00000113406 4606 ntAPPRIS ALT2 TSL 5 BASIC12.35□□□□□ -0.43
Lima1Q9ERG0 Mrpl44-201ENSMUST00000027464 1424 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Lima1Q9ERG0 Tacc2-201ENSMUST00000033141 3940 ntAPPRIS ALT2 TSL 5 BASIC12.35□□□□□ -0.43
Lima1Q9ERG0 Cbfa2t2-202ENSMUST00000099178 3247 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
Lima1Q9ERG0 Grm5-202ENSMUST00000125009 8047 ntAPPRIS P3 TSL 5 BASIC12.35□□□□□ -0.43
Lima1Q9ERG0 Arsa-202ENSMUST00000165199 3492 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Lima1Q9ERG0 Runx1-201ENSMUST00000023673 5861 ntAPPRIS ALT2 TSL 1 (best) BASIC12.35□□□□□ -0.43
Lima1Q9ERG0 Col14a1-201ENSMUST00000023053 6457 ntAPPRIS ALT1 TSL 5 BASIC12.35□□□□□ -0.43
Lima1Q9ERG0 Ecd-201ENSMUST00000022344 3132 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Lima1Q9ERG0 Zranb2-201ENSMUST00000029831 2540 ntTSL 5 BASIC12.35□□□□□ -0.43
Lima1Q9ERG0 Spata7-203ENSMUST00000101146 1913 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
Lima1Q9ERG0 Stat5a-203ENSMUST00000107357 3605 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
Lima1Q9ERG0 5930412G12Rik-201ENSMUST00000091324 2403 ntTSL 5 BASIC12.35□□□□□ -0.43
Lima1Q9ERG0 Ncapd3-201ENSMUST00000073127 5499 ntAPPRIS P2 TSL 5 BASIC12.34□□□□□ -0.43
Lima1Q9ERG0 Rin2-202ENSMUST00000110005 4641 ntAPPRIS ALT2 TSL 5 BASIC12.34□□□□□ -0.43
Lima1Q9ERG0 Pdhx-202ENSMUST00000111183 2078 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
Lima1Q9ERG0 Clec10a-209ENSMUST00000178945 2332 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
Lima1Q9ERG0 Dpysl5-201ENSMUST00000088081 5022 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Lima1Q9ERG0 Klhl8-202ENSMUST00000112811 2577 ntTSL 5 BASIC12.34□□□□□ -0.43
Lima1Q9ERG0 Ppm1b-204ENSMUST00000112307 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC12.34□□□□□ -0.43
Lima1Q9ERG0 Actc1-201ENSMUST00000090269 1473 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Lima1Q9ERG0 Trim46-202ENSMUST00000090924 2721 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
Lima1Q9ERG0 Nxf1-211ENSMUST00000184970 5591 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
Lima1Q9ERG0 Scamp5-201ENSMUST00000046587 3225 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Lima1Q9ERG0 Tal1-203ENSMUST00000161601 3703 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Lima1Q9ERG0 Atp6v0a1-210ENSMUST00000168757 3967 ntAPPRIS ALT1 TSL 5 BASIC12.34□□□□□ -0.43
Lima1Q9ERG0 Dip2a-202ENSMUST00000105417 6383 ntAPPRIS ALT2 TSL 5 BASIC12.34□□□□□ -0.43
Lima1Q9ERG0 Rab3d-203ENSMUST00000122211 3886 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Lima1Q9ERG0 Alas1-201ENSMUST00000074082 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC12.34□□□□□ -0.43
Lima1Q9ERG0 Dock11-201ENSMUST00000033419 6665 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Lima1Q9ERG0 Plxna1-201ENSMUST00000049845 5810 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Lima1Q9ERG0 Fbxw17-201ENSMUST00000046974 1798 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Lima1Q9ERG0 Cflar-202ENSMUST00000097722 1771 ntAPPRIS ALT2 TSL 5 BASIC12.34□□□□□ -0.43
Lima1Q9ERG0 Olfr658-202ENSMUST00000210641 2915 ntAPPRIS ALT1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Lima1Q9ERG0 Olfr658-201ENSMUST00000089296 2912 ntAPPRIS P2 TSL 1 (best) BASIC12.34□□□□□ -0.43
Lima1Q9ERG0 Rfx6-204ENSMUST00000219364 2682 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
Lima1Q9ERG0 Mir692-1-201ENSMUST00000102263 109 ntBASIC12.34□□□□□ -0.43
Lima1Q9ERG0 Tssc4-202ENSMUST00000105920 895 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
Lima1Q9ERG0 Cpsf4l-203ENSMUST00000106617 1123 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
Lima1Q9ERG0 R3hdml-201ENSMUST00000109416 1094 ntAPPRIS P1 TSL 5 BASIC12.34□□□□□ -0.43
Lima1Q9ERG0 Gm12138-201ENSMUST00000122180 951 ntBASIC12.34□□□□□ -0.43
Lima1Q9ERG0 Rsf1os2-203ENSMUST00000155074 998 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
Lima1Q9ERG0 Unkl-205ENSMUST00000161679 1053 ntTSL 5 BASIC12.34□□□□□ -0.43
Lima1Q9ERG0 Gm5819-201ENSMUST00000171469 465 ntAPPRIS P1 BASIC12.34□□□□□ -0.43
Lima1Q9ERG0 Prr29-204ENSMUST00000188561 592 ntAPPRIS ALT2 TSL 5 BASIC12.34□□□□□ -0.43
Lima1Q9ERG0 Prr29-206ENSMUST00000190795 822 ntTSL 5 BASIC12.34□□□□□ -0.43
Lima1Q9ERG0 Sox2ot-216ENSMUST00000200092 767 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
Lima1Q9ERG0 Gm38671-201ENSMUST00000200573 130 ntBASIC12.34□□□□□ -0.43
Lima1Q9ERG0 Gm9794-201ENSMUST00000202370 423 ntBASIC12.34□□□□□ -0.43
Lima1Q9ERG0 4930438A08Rik-202ENSMUST00000208022 918 ntTSL 5 BASIC12.34□□□□□ -0.43
Lima1Q9ERG0 Sct-204ENSMUST00000211667 506 ntAPPRIS ALT2 TSL 2 BASIC12.34□□□□□ -0.43
Lima1Q9ERG0 Gm34466-201ENSMUST00000222218 505 ntTSL 2 BASIC12.34□□□□□ -0.43
Lima1Q9ERG0 Arl3-201ENSMUST00000026009 822 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Lima1Q9ERG0 Myo6-204ENSMUST00000113268 7927 ntTSL 5 BASIC12.34□□□□□ -0.43
Lima1Q9ERG0 Phactr2-201ENSMUST00000079698 1934 ntAPPRIS ALT2 TSL 5 BASIC12.34□□□□□ -0.43
Lima1Q9ERG0 Usp13-201ENSMUST00000072312 7580 ntAPPRIS P2 TSL 1 (best) BASIC12.34□□□□□ -0.43
Lima1Q9ERG0 AC154639.1-201ENSMUST00000224393 2849 ntBASIC12.34□□□□□ -0.43
Lima1Q9ERG0 Snx29-203ENSMUST00000122168 2096 ntTSL 5 BASIC12.34□□□□□ -0.43
Lima1Q9ERG0 Plxnb2-201ENSMUST00000060808 6394 ntAPPRIS P1 TSL 5 BASIC12.34□□□□□ -0.43
Lima1Q9ERG0 Hdac5-204ENSMUST00000107152 3788 ntAPPRIS P3 TSL 1 (best) BASIC12.34□□□□□ -0.43
Lima1Q9ERG0 Gdpd2-201ENSMUST00000019503 2495 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Lima1Q9ERG0 Camta2-205ENSMUST00000119120 4460 ntAPPRIS ALT2 TSL 1 (best) BASIC12.34□□□□□ -0.43
Lima1Q9ERG0 Dusp13-202ENSMUST00000119866 1342 ntTSL 5 BASIC12.34□□□□□ -0.43
Lima1Q9ERG0 Tmem56-204ENSMUST00000135818 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC12.34□□□□□ -0.43
Lima1Q9ERG0 Zcchc11-202ENSMUST00000097925 5865 ntAPPRIS ALT2 TSL 5 BASIC12.34□□□□□ -0.43
Lima1Q9ERG0 Camsap3-205ENSMUST00000207432 3865 ntAPPRIS ALT2 TSL 1 (best) BASIC12.34□□□□□ -0.43
Lima1Q9ERG0 Cdk5rap3-201ENSMUST00000103152 2250 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Lima1Q9ERG0 Trim45-204ENSMUST00000134993 2274 ntAPPRIS ALT2 TSL 1 (best) BASIC12.34□□□□□ -0.43
Lima1Q9ERG0 Tnfrsf22-203ENSMUST00000146692 2298 ntAPPRIS P3 TSL 1 (best) BASIC12.34□□□□□ -0.43
Lima1Q9ERG0 Ccdc154-203ENSMUST00000182621 2402 ntAPPRIS P2 TSL 5 BASIC12.33□□□□□ -0.43
Lima1Q9ERG0 Rgs3-205ENSMUST00000107424 4084 ntTSL 1 (best) BASIC12.33□□□□□ -0.43
Lima1Q9ERG0 Pabpc4-204ENSMUST00000106243 3111 ntAPPRIS ALT1 TSL 5 BASIC12.33□□□□□ -0.44
Lima1Q9ERG0 Kank4-201ENSMUST00000102790 4795 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Lima1Q9ERG0 Hk3-203ENSMUST00000126234 3032 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Lima1Q9ERG0 Ptchd3-201ENSMUST00000036690 3194 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Lima1Q9ERG0 Tubd1-201ENSMUST00000020821 2070 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
Lima1Q9ERG0 Madd-209ENSMUST00000111371 5816 ntAPPRIS ALT2 TSL 2 BASIC12.33□□□□□ -0.44
Retrieved 100 of 76,532 protein–RNA pairs in 56.2 ms