Protein–RNA interactions for Protein: Q9CWT6

Ddx28, Probable ATP-dependent RNA helicase DDX28, mousemouse

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx28Q9CWT6 Apopt1-203ENSMUST00000162316 3107 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
Ddx28Q9CWT6 Gm37849-201ENSMUST00000194722 1881 ntBASIC11.77□□□□□ -0.53
Ddx28Q9CWT6 Gm15411-201ENSMUST00000133243 3488 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
Ddx28Q9CWT6 Mirg-208ENSMUST00000182499 3187 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
Ddx28Q9CWT6 Zfp248-205ENSMUST00000161519 2243 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
Ddx28Q9CWT6 Mir692-1-201ENSMUST00000102263 109 ntBASIC11.77□□□□□ -0.53
Ddx28Q9CWT6 Anapc15-204ENSMUST00000106973 650 ntAPPRIS P1 TSL 2 BASIC11.77□□□□□ -0.53
Ddx28Q9CWT6 Birc7-201ENSMUST00000108875 1178 ntAPPRIS P1 TSL 5 BASIC11.77□□□□□ -0.53
Ddx28Q9CWT6 Fgf18-202ENSMUST00000109363 991 ntTSL 3 BASIC11.77□□□□□ -0.53
Ddx28Q9CWT6 Gm28198-201ENSMUST00000190938 471 ntTSL 3 BASIC11.77□□□□□ -0.53
Ddx28Q9CWT6 Gm44069-201ENSMUST00000204898 506 ntBASIC11.77□□□□□ -0.53
Ddx28Q9CWT6 Gm44064-201ENSMUST00000204964 1087 ntBASIC11.77□□□□□ -0.53
Ddx28Q9CWT6 Ifitm3-201ENSMUST00000026565 678 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Ddx28Q9CWT6 Tada3-203ENSMUST00000099118 1282 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
Ddx28Q9CWT6 Wnt16-202ENSMUST00000128245 3285 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
Ddx28Q9CWT6 Ctbp2-209ENSMUST00000166439 1997 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
Ddx28Q9CWT6 Adgre5-208ENSMUST00000166939 2980 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
Ddx28Q9CWT6 Adgre5-201ENSMUST00000002964 2986 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
Ddx28Q9CWT6 Vmn2r-ps25-201ENSMUST00000202322 2321 ntBASIC11.77□□□□□ -0.53
Ddx28Q9CWT6 Gm8798-201ENSMUST00000211877 1661 ntBASIC11.77□□□□□ -0.53
Ddx28Q9CWT6 Palm-204ENSMUST00000218631 2725 ntTSL 2 BASIC11.77□□□□□ -0.53
Ddx28Q9CWT6 Mcm9-204ENSMUST00000219838 4132 ntTSL 5 BASIC11.77□□□□□ -0.53
Ddx28Q9CWT6 AC151895.1-201ENSMUST00000219025 1742 ntBASIC11.77□□□□□ -0.53
Ddx28Q9CWT6 Bod1l-204ENSMUST00000202908 10399 ntAPPRIS ALT2 TSL 5 BASIC11.77□□□□□ -0.53
Ddx28Q9CWT6 Gm36957-201ENSMUST00000192982 2824 ntBASIC11.77□□□□□ -0.53
Ddx28Q9CWT6 Arhgef16-207ENSMUST00000169623 2474 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Ddx28Q9CWT6 Gm5912-201ENSMUST00000122282 1438 ntBASIC11.77□□□□□ -0.53
Ddx28Q9CWT6 Sirt2-202ENSMUST00000122915 1828 ntAPPRIS ALT2 TSL 1 (best) BASIC11.76□□□□□ -0.53
Ddx28Q9CWT6 Myo18a-202ENSMUST00000092884 5117 ntAPPRIS ALT2 TSL 5 BASIC11.76□□□□□ -0.53
Ddx28Q9CWT6 Aff3-203ENSMUST00000095027 5857 ntAPPRIS P2 TSL 5 BASIC11.76□□□□□ -0.53
Ddx28Q9CWT6 Padi2-201ENSMUST00000030765 4774 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Ddx28Q9CWT6 Ush1c-209ENSMUST00000222454 2580 ntAPPRIS ALT2 TSL 5 BASIC11.76□□□□□ -0.53
Ddx28Q9CWT6 Zfyve1-203ENSMUST00000221919 4420 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Ddx28Q9CWT6 Zfp654-202ENSMUST00000207826 6261 ntAPPRIS ALT2 TSL 5 BASIC11.76□□□□□ -0.53
Ddx28Q9CWT6 Zc3h12d-201ENSMUST00000039484 4092 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Ddx28Q9CWT6 Gm10548-201ENSMUST00000097631 2629 ntBASIC11.76□□□□□ -0.53
Ddx28Q9CWT6 Smc5-202ENSMUST00000223934 3448 ntAPPRIS P2 BASIC11.76□□□□□ -0.53
Ddx28Q9CWT6 Abca3-201ENSMUST00000039013 6476 ntAPPRIS P2 TSL 1 (best) BASIC11.76□□□□□ -0.53
Ddx28Q9CWT6 Acy1-201ENSMUST00000024031 1529 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Ddx28Q9CWT6 Suclg1-201ENSMUST00000064740 1519 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Ddx28Q9CWT6 Poll-201ENSMUST00000026239 2324 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Ddx28Q9CWT6 Pitpnm2-201ENSMUST00000086123 6620 ntAPPRIS P3 TSL 1 (best) BASIC11.76□□□□□ -0.53
Ddx28Q9CWT6 Pik3cd-203ENSMUST00000105689 3132 ntAPPRIS ALT1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Ddx28Q9CWT6 Zbtb25-205ENSMUST00000176509 1591 ntTSL 2 BASIC11.76□□□□□ -0.53
Ddx28Q9CWT6 Gm15991-202ENSMUST00000212123 3565 ntBASIC11.76□□□□□ -0.53
Ddx28Q9CWT6 Washc5-201ENSMUST00000022976 4033 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Ddx28Q9CWT6 Poc1b-201ENSMUST00000020113 2862 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Ddx28Q9CWT6 Pianp-207ENSMUST00000162170 2053 ntAPPRIS P2 TSL 1 (best) BASIC11.76□□□□□ -0.53
Ddx28Q9CWT6 Mul1-203ENSMUST00000105815 473 ntTSL 3 BASIC11.76□□□□□ -0.53
Ddx28Q9CWT6 Trmt1-203ENSMUST00000109767 2138 ntAPPRIS P3 TSL 1 (best) BASIC11.76□□□□□ -0.53
Ddx28Q9CWT6 St6galnac6-209ENSMUST00000131229 1013 ntTSL 2 BASIC11.76□□□□□ -0.53
Ddx28Q9CWT6 Tmem80-205ENSMUST00000132061 667 ntAPPRIS P1 TSL 3 BASIC11.76□□□□□ -0.53
Ddx28Q9CWT6 Pmepa1os-201ENSMUST00000150185 680 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
Ddx28Q9CWT6 Spata3-209ENSMUST00000152501 743 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
Ddx28Q9CWT6 A430057M04Rik-201ENSMUST00000169054 3835 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
Ddx28Q9CWT6 Cd40-201ENSMUST00000017799 2986 ntAPPRIS P4 TSL 1 (best) BASIC11.76□□□□□ -0.53
Ddx28Q9CWT6 2810429I04Rik-210ENSMUST00000189464 868 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
Ddx28Q9CWT6 Gm5519-201ENSMUST00000042061 513 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Ddx28Q9CWT6 Myh10-203ENSMUST00000102611 7791 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Ddx28Q9CWT6 Rgma-202ENSMUST00000119206 3481 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
Ddx28Q9CWT6 Acly-201ENSMUST00000007131 4393 ntAPPRIS P3 TSL 1 (best) BASIC11.76□□□□□ -0.53
Ddx28Q9CWT6 B930036N10Rik-202ENSMUST00000181170 3544 ntBASIC11.76□□□□□ -0.53
Ddx28Q9CWT6 4930444K16Rik-201ENSMUST00000220438 1767 ntBASIC11.76□□□□□ -0.53
Ddx28Q9CWT6 Rbm11-203ENSMUST00000114253 2699 ntAPPRIS P2 TSL 1 (best) BASIC11.76□□□□□ -0.53
Ddx28Q9CWT6 Kcnj11-205ENSMUST00000211674 3142 ntAPPRIS P1 BASIC11.76□□□□□ -0.53
Ddx28Q9CWT6 Ehbp1l1-202ENSMUST00000075606 3572 ntAPPRIS ALT2 TSL 1 (best) BASIC11.76□□□□□ -0.53
Ddx28Q9CWT6 Gucy2e-203ENSMUST00000108665 3645 ntAPPRIS P1 TSL 5 BASIC11.76□□□□□ -0.53
Ddx28Q9CWT6 Slit2-216ENSMUST00000174313 7734 ntAPPRIS ALT2 TSL 1 (best) BASIC11.76□□□□□ -0.53
Ddx28Q9CWT6 Gm12802-201ENSMUST00000145510 1813 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
Ddx28Q9CWT6 Ciz1-204ENSMUST00000113334 2871 ntAPPRIS P3 TSL 5 BASIC11.76□□□□□ -0.53
Ddx28Q9CWT6 Tspan13-201ENSMUST00000020896 1932 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Ddx28Q9CWT6 AC153506.1-201ENSMUST00000218768 2915 ntBASIC11.76□□□□□ -0.53
Ddx28Q9CWT6 Ccr7-201ENSMUST00000103134 1978 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Ddx28Q9CWT6 Gimap5-201ENSMUST00000055558 1953 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Ddx28Q9CWT6 AC131586.1-201ENSMUST00000228844 2964 ntBASIC11.76□□□□□ -0.53
Ddx28Q9CWT6 Phf24-202ENSMUST00000107975 6494 ntAPPRIS P1 TSL 2 BASIC11.76□□□□□ -0.53
Ddx28Q9CWT6 Mob3b-201ENSMUST00000102975 6030 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Ddx28Q9CWT6 Apol9b-201ENSMUST00000109775 1545 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Ddx28Q9CWT6 Ccdc163-201ENSMUST00000030452 1524 ntAPPRIS ALT2 TSL 5 BASIC11.76□□□□□ -0.53
Ddx28Q9CWT6 Rps6ka6-202ENSMUST00000082034 4170 ntAPPRIS P2 TSL 5 BASIC11.75□□□□□ -0.53
Ddx28Q9CWT6 Rnf180-205ENSMUST00000226044 3279 ntAPPRIS ALT2 BASIC11.75□□□□□ -0.53
Ddx28Q9CWT6 Poldip3-201ENSMUST00000058793 3297 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Ddx28Q9CWT6 AC122840.1-201ENSMUST00000220915 3334 ntBASIC11.75□□□□□ -0.53
Ddx28Q9CWT6 Abo-201ENSMUST00000102900 1779 ntAPPRIS P2 TSL 1 (best) BASIC11.75□□□□□ -0.53
Ddx28Q9CWT6 Sirt4-201ENSMUST00000112066 1794 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Ddx28Q9CWT6 Egr2-201ENSMUST00000048289 2965 ntAPPRIS P3 TSL 1 (best) BASIC11.75□□□□□ -0.53
Ddx28Q9CWT6 Plpbp-201ENSMUST00000033875 3603 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Ddx28Q9CWT6 Ppp1r16b-202ENSMUST00000052927 6685 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Ddx28Q9CWT6 Gm12766-201ENSMUST00000140298 1823 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
Ddx28Q9CWT6 Nrd1-201ENSMUST00000065977 4311 ntAPPRIS P3 TSL 1 (best) BASIC11.75□□□□□ -0.53
Ddx28Q9CWT6 Trav13d-2-201ENSMUST00000103596 264 ntAPPRIS P1 BASIC11.75□□□□□ -0.53
Ddx28Q9CWT6 Trav13n-2-201ENSMUST00000103622 264 ntAPPRIS P1 BASIC11.75□□□□□ -0.53
Ddx28Q9CWT6 Gm16202-201ENSMUST00000117532 544 ntBASIC11.75□□□□□ -0.53
Ddx28Q9CWT6 Egfl7-208ENSMUST00000149789 683 ntTSL 3 BASIC11.75□□□□□ -0.53
Ddx28Q9CWT6 Prss55-203ENSMUST00000171503 1074 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
Ddx28Q9CWT6 C030018K13Rik-202ENSMUST00000196829 712 ntTSL 3 BASIC11.75□□□□□ -0.53
Ddx28Q9CWT6 Gm43240-201ENSMUST00000198543 630 ntTSL 3 BASIC11.75□□□□□ -0.53
Ddx28Q9CWT6 4933405L10Rik-202ENSMUST00000211852 1097 ntAPPRIS ALT2 TSL 1 (best) BASIC11.75□□□□□ -0.53
Ddx28Q9CWT6 AC150560.1-201ENSMUST00000227731 1187 ntBASIC11.75□□□□□ -0.53
Ddx28Q9CWT6 Mul1-202ENSMUST00000105813 3944 ntTSL 5 BASIC11.75□□□□□ -0.53
Retrieved 100 of 76,532 protein–RNA pairs in 32.1 ms