Protein–RNA interactions for Protein: Q8R5L3

Vps39, Vam6/Vps39-like protein, mousemouse

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps39Q8R5L3 Fgf2-201ENSMUST00000038885 462 ntAPPRIS ALT2 TSL 1 (best) BASIC12.54□□□□□ -0.4
Vps39Q8R5L3 Usmg5-201ENSMUST00000096014 341 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Vps39Q8R5L3 L1td1-204ENSMUST00000173659 2547 ntAPPRIS ALT2 TSL 2 BASIC12.54□□□□□ -0.4
Vps39Q8R5L3 Poc1b-201ENSMUST00000020113 2862 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Vps39Q8R5L3 Slc25a22-223ENSMUST00000201710 2565 ntAPPRIS P1 TSL 5 BASIC12.54□□□□□ -0.4
Vps39Q8R5L3 Ttc33-203ENSMUST00000118193 1671 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Vps39Q8R5L3 Terf2ip-201ENSMUST00000052138 3560 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Vps39Q8R5L3 Aldh6a1-201ENSMUST00000085192 3399 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Vps39Q8R5L3 Them4-201ENSMUST00000049822 1781 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Vps39Q8R5L3 Sema4f-201ENSMUST00000000641 4086 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Vps39Q8R5L3 Lat2-205ENSMUST00000200998 1481 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Vps39Q8R5L3 Ephb6-201ENSMUST00000114732 3762 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Vps39Q8R5L3 Pitpnm3-202ENSMUST00000108508 6450 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
Vps39Q8R5L3 Cog6-201ENSMUST00000036665 3182 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Vps39Q8R5L3 Hipk4-201ENSMUST00000037134 2926 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Vps39Q8R5L3 Bcar3-201ENSMUST00000029766 3311 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Vps39Q8R5L3 Frmd4a-202ENSMUST00000091497 6208 ntAPPRIS P3 TSL 1 (best) BASIC12.53□□□□□ -0.4
Vps39Q8R5L3 Trim9-209ENSMUST00000222316 3049 ntTSL 2 BASIC12.53□□□□□ -0.4
Vps39Q8R5L3 Tfe3-205ENSMUST00000115678 2658 ntTSL 5 BASIC12.53□□□□□ -0.4
Vps39Q8R5L3 Cpped1-202ENSMUST00000096272 2663 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Vps39Q8R5L3 Tubgcp3-201ENSMUST00000000776 3797 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Vps39Q8R5L3 Lmbr1-203ENSMUST00000196321 3422 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Vps39Q8R5L3 Neu4-201ENSMUST00000050890 4511 ntAPPRIS P3 TSL 1 (best) BASIC12.53□□□□□ -0.4
Vps39Q8R5L3 Alkbh2-202ENSMUST00000112279 899 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Vps39Q8R5L3 Gm13492-201ENSMUST00000119772 665 ntBASIC12.53□□□□□ -0.4
Vps39Q8R5L3 1110018N20Rik-202ENSMUST00000147446 1162 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Vps39Q8R5L3 Gm26602-201ENSMUST00000181321 285 ntAPPRIS P1 BASIC12.53□□□□□ -0.4
Vps39Q8R5L3 Gm44780-201ENSMUST00000205409 581 ntTSL 3 BASIC12.53□□□□□ -0.4
Vps39Q8R5L3 Gp9-201ENSMUST00000032133 881 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Vps39Q8R5L3 Utp23-201ENSMUST00000059599 740 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Vps39Q8R5L3 Pianp-206ENSMUST00000162000 2396 ntAPPRIS ALT2 TSL 5 BASIC12.53□□□□□ -0.4
Vps39Q8R5L3 Scn8a-208ENSMUST00000200963 5814 ntTSL 5 BASIC12.53□□□□□ -0.4
Vps39Q8R5L3 Entpd4-206ENSMUST00000184973 3589 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Vps39Q8R5L3 Entpd4b-204ENSMUST00000185072 3589 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Vps39Q8R5L3 Specc1-213ENSMUST00000202179 6676 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
Vps39Q8R5L3 Tmem201-202ENSMUST00000103208 3620 ntAPPRIS P3 TSL 1 (best) BASIC12.53□□□□□ -0.4
Vps39Q8R5L3 Ackr2-201ENSMUST00000050327 2853 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Vps39Q8R5L3 Foxp1-205ENSMUST00000113324 2121 ntTSL 5 BASIC12.53□□□□□ -0.4
Vps39Q8R5L3 Foxp1-207ENSMUST00000113328 2121 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Vps39Q8R5L3 Foxp1-228ENSMUST00000177307 2121 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Vps39Q8R5L3 Arhgap31-201ENSMUST00000023487 7964 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Vps39Q8R5L3 Nab1-204ENSMUST00000170269 1371 ntTSL 5 BASIC12.53□□□□□ -0.4
Vps39Q8R5L3 Dab2ip-201ENSMUST00000065001 6392 ntAPPRIS P3 TSL 1 (best) BASIC12.53□□□□□ -0.4
Vps39Q8R5L3 Ddx10-201ENSMUST00000065630 3128 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Vps39Q8R5L3 Myo1d-202ENSMUST00000070997 3106 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Vps39Q8R5L3 Gfra1-203ENSMUST00000129100 4415 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Vps39Q8R5L3 Gm10544-202ENSMUST00000181887 1923 ntTSL 1 (best) BASIC12.52□□□□□ -0.4
Vps39Q8R5L3 Rtbdn-201ENSMUST00000067472 1908 ntAPPRIS P2 TSL 1 (best) BASIC12.52□□□□□ -0.4
Vps39Q8R5L3 Slc4a3-202ENSMUST00000124341 7182 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
Vps39Q8R5L3 Slc14a1-203ENSMUST00000160639 2047 ntAPPRIS P3 TSL 1 (best) BASIC12.52□□□□□ -0.4
Vps39Q8R5L3 B230209E15Rik-201ENSMUST00000209115 1597 ntTSL 5 BASIC12.52□□□□□ -0.4
Vps39Q8R5L3 Krit1-201ENSMUST00000080085 2930 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
Vps39Q8R5L3 Dmbt1-201ENSMUST00000084509 6243 ntAPPRIS P3 TSL 1 (best) BASIC12.52□□□□□ -0.4
Vps39Q8R5L3 Abhd14b-209ENSMUST00000216130 1624 ntAPPRIS P1 TSL 5 BASIC12.52□□□□□ -0.4
Vps39Q8R5L3 Epb41l1-206ENSMUST00000109577 6251 ntTSL 5 BASIC12.52□□□□□ -0.4
Vps39Q8R5L3 Nxph1-201ENSMUST00000060369 2578 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
Vps39Q8R5L3 Cdk13-207ENSMUST00000223490 12548 ntAPPRIS ALT2 TSL 1 (best) BASIC12.52□□□□□ -0.4
Vps39Q8R5L3 Gm26677-201ENSMUST00000180553 1672 ntTSL 5 BASIC12.52□□□□□ -0.4
Vps39Q8R5L3 Gm5053-201ENSMUST00000208361 1678 ntBASIC12.52□□□□□ -0.4
Vps39Q8R5L3 Exosc2-201ENSMUST00000038474 1686 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
Vps39Q8R5L3 Pak6-202ENSMUST00000110853 3677 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Vps39Q8R5L3 Gm27177-202ENSMUST00000183514 2703 ntBASIC12.52□□□□□ -0.41
Vps39Q8R5L3 Trmt1l-201ENSMUST00000065625 2749 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Vps39Q8R5L3 Apoc1-202ENSMUST00000108451 532 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Vps39Q8R5L3 Litaf-202ENSMUST00000117360 763 ntAPPRIS P1 TSL 3 BASIC12.52□□□□□ -0.41
Vps39Q8R5L3 Hmgcll1-202ENSMUST00000117981 1189 ntTSL 5 BASIC12.52□□□□□ -0.41
Vps39Q8R5L3 Mthfsd-206ENSMUST00000133037 1060 ntTSL 5 BASIC12.52□□□□□ -0.41
Vps39Q8R5L3 Rmrp-201ENSMUST00000157463 271 ntBASIC12.52□□□□□ -0.41
Vps39Q8R5L3 Cabp2-202ENSMUST00000159556 781 ntAPPRIS ALT2 TSL 1 (best) BASIC12.52□□□□□ -0.41
Vps39Q8R5L3 Ociad1-210ENSMUST00000202250 800 ntTSL 2 BASIC12.52□□□□□ -0.41
Vps39Q8R5L3 AC152453.1-201ENSMUST00000218802 1254 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Vps39Q8R5L3 AC069562.3-201ENSMUST00000225387 587 ntBASIC12.52□□□□□ -0.41
Vps39Q8R5L3 AL732506.1-201ENSMUST00000226420 281 ntBASIC12.52□□□□□ -0.41
Vps39Q8R5L3 Rpl10-202ENSMUST00000074085 855 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Vps39Q8R5L3 Gm10268-201ENSMUST00000085340 555 ntBASIC12.52□□□□□ -0.41
Vps39Q8R5L3 Prpf40a-206ENSMUST00000209364 2833 ntAPPRIS ALT2 TSL 5 BASIC12.52□□□□□ -0.41
Vps39Q8R5L3 Abcd1-202ENSMUST00000114461 2323 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
Vps39Q8R5L3 Cog7-203ENSMUST00000205438 3355 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
Vps39Q8R5L3 Trpc2-201ENSMUST00000124189 2874 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Vps39Q8R5L3 Mgll-207ENSMUST00000163271 3991 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
Vps39Q8R5L3 Ptdss2-201ENSMUST00000026568 3624 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Vps39Q8R5L3 Cers6-201ENSMUST00000028426 7038 ntAPPRIS P3 TSL 1 (best) BASIC12.52□□□□□ -0.41
Vps39Q8R5L3 Rftn2-202ENSMUST00000114428 2012 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
Vps39Q8R5L3 Picalm-213ENSMUST00000208742 3361 ntAPPRIS ALT2 TSL 1 (best) BASIC12.52□□□□□ -0.41
Vps39Q8R5L3 Rabif-201ENSMUST00000047978 2861 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Vps39Q8R5L3 Opcml-201ENSMUST00000073822 2378 ntAPPRIS P1 TSL 5 BASIC12.51□□□□□ -0.41
Vps39Q8R5L3 Dhx30-212ENSMUST00000197928 4441 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Vps39Q8R5L3 Atg7-212ENSMUST00000182902 2543 ntAPPRIS P3 TSL 2 BASIC12.51□□□□□ -0.41
Vps39Q8R5L3 Apbb2-216ENSMUST00000162366 6540 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
Vps39Q8R5L3 Sin3a-206ENSMUST00000168177 5086 ntAPPRIS ALT1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Vps39Q8R5L3 Dnmt1-201ENSMUST00000004202 5367 ntAPPRIS P4 TSL 1 (best) BASIC12.51□□□□□ -0.41
Vps39Q8R5L3 Gm24231-201ENSMUST00000104315 133 ntBASIC12.51□□□□□ -0.41
Vps39Q8R5L3 Chchd7-207ENSMUST00000121210 548 ntTSL 2 BASIC12.51□□□□□ -0.41
Vps39Q8R5L3 4930579D09Rik-201ENSMUST00000132321 469 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
Vps39Q8R5L3 Sbk3-201ENSMUST00000133272 1086 ntAPPRIS ALT2 TSL 5 BASIC12.51□□□□□ -0.41
Vps39Q8R5L3 Klk12-201ENSMUST00000014063 924 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Vps39Q8R5L3 Gm7029-201ENSMUST00000173226 450 ntBASIC12.51□□□□□ -0.41
Vps39Q8R5L3 Gm38092-201ENSMUST00000195600 653 ntBASIC12.51□□□□□ -0.41
Vps39Q8R5L3 Lsm7-208ENSMUST00000220225 1129 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
Vps39Q8R5L3 Gm32635-201ENSMUST00000221493 1162 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
Retrieved 100 of 76,532 protein–RNA pairs in 44.2 ms