Protein–RNA interactions for Protein: Q8R370

Ushbp1, Usher syndrome type-1C protein-binding protein 1, mousemouse

Predictions only

Length 680 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ushbp1Q8R370 Zfp961-202ENSMUST00000131237 2689 ntAPPRIS ALT2 TSL 3 BASIC14.04□□□□□ -0.16
Ushbp1Q8R370 Tmc8-204ENSMUST00000119455 2736 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
Ushbp1Q8R370 Adora1-201ENSMUST00000038191 3625 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Ushbp1Q8R370 Chpf2-202ENSMUST00000121863 3715 ntAPPRIS P1 TSL 5 BASIC14.04□□□□□ -0.16
Ushbp1Q8R370 Pin4-201ENSMUST00000113627 489 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Ushbp1Q8R370 Pisd-ps1-203ENSMUST00000145164 789 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Ushbp1Q8R370 Cabp2-201ENSMUST00000159148 1030 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
Ushbp1Q8R370 6430590A07Rik-201ENSMUST00000181813 1032 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Ushbp1Q8R370 Gm3890-201ENSMUST00000182416 207 ntBASIC14.04□□□□□ -0.16
Ushbp1Q8R370 Pex1-208ENSMUST00000195894 528 ntTSL 3 BASIC14.04□□□□□ -0.16
Ushbp1Q8R370 Gm35368-201ENSMUST00000209554 1244 ntTSL 5 BASIC14.04□□□□□ -0.16
Ushbp1Q8R370 AC122371.3-201ENSMUST00000223402 1061 ntBASIC14.04□□□□□ -0.16
Ushbp1Q8R370 Aurkc-201ENSMUST00000086248 1154 ntAPPRIS P3 TSL 1 (best) BASIC14.04□□□□□ -0.16
Ushbp1Q8R370 Grid1-201ENSMUST00000043349 5720 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Ushbp1Q8R370 Gm20700-201ENSMUST00000176749 2206 ntTSL 3 BASIC14.04□□□□□ -0.16
Ushbp1Q8R370 2610507I01Rik-201ENSMUST00000154354 1360 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Ushbp1Q8R370 Bckdhb-205ENSMUST00000190166 1398 ntAPPRIS P3 TSL 1 (best) BASIC14.04□□□□□ -0.16
Ushbp1Q8R370 Grin1-201ENSMUST00000028335 4238 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Ushbp1Q8R370 2310035C23Rik-201ENSMUST00000039173 4328 ntAPPRIS P3 TSL 1 (best) BASIC14.04□□□□□ -0.16
Ushbp1Q8R370 Myh14-203ENSMUST00000107900 6400 ntAPPRIS ALT2 TSL 5 BASIC14.04□□□□□ -0.16
Ushbp1Q8R370 Atg7-210ENSMUST00000182793 2459 ntAPPRIS P3 TSL 1 (best) BASIC14.04□□□□□ -0.16
Ushbp1Q8R370 Dysf-213ENSMUST00000203803 6590 ntTSL 5 BASIC14.04□□□□□ -0.16
Ushbp1Q8R370 Slc25a22-223ENSMUST00000201710 2565 ntAPPRIS P1 TSL 5 BASIC14.04□□□□□ -0.16
Ushbp1Q8R370 Zfp41-201ENSMUST00000054555 3736 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Ushbp1Q8R370 Nsmce2-202ENSMUST00000168722 2679 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Ushbp1Q8R370 Gm17189-201ENSMUST00000163707 1630 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Ushbp1Q8R370 Abhd14b-209ENSMUST00000216130 1624 ntAPPRIS P1 TSL 5 BASIC14.04□□□□□ -0.16
Ushbp1Q8R370 Zmym1-202ENSMUST00000106099 2982 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
Ushbp1Q8R370 Clcn3-201ENSMUST00000004430 4175 ntAPPRIS ALT1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Ushbp1Q8R370 Aaas-201ENSMUST00000041208 1816 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Ushbp1Q8R370 Chrna3-201ENSMUST00000034851 4358 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Ushbp1Q8R370 Bcl2l15-202ENSMUST00000106822 1902 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Ushbp1Q8R370 Setd1b-206ENSMUST00000174836 7515 ntAPPRIS ALT2 TSL 5 BASIC14.03□□□□□ -0.16
Ushbp1Q8R370 Chpf2-201ENSMUST00000088295 5371 ntAPPRIS P1 TSL 2 BASIC14.03□□□□□ -0.16
Ushbp1Q8R370 Smg7-203ENSMUST00000111836 3928 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
Ushbp1Q8R370 Slc13a2-201ENSMUST00000001122 2412 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Ushbp1Q8R370 Met-202ENSMUST00000115442 4663 ntAPPRIS P1 TSL 5 BASIC14.03□□□□□ -0.16
Ushbp1Q8R370 Irf8-201ENSMUST00000047737 2847 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Ushbp1Q8R370 Pnma3-201ENSMUST00000060418 3405 ntAPPRIS P1 BASIC14.03□□□□□ -0.16
Ushbp1Q8R370 9230102O04Rik-201ENSMUST00000114915 528 ntAPPRIS P1 TSL 2 BASIC14.03□□□□□ -0.16
Ushbp1Q8R370 Gm12176-201ENSMUST00000121420 875 ntBASIC14.03□□□□□ -0.16
Ushbp1Q8R370 Snhg17-206ENSMUST00000152125 1046 ntTSL 3 BASIC14.03□□□□□ -0.16
Ushbp1Q8R370 Gm17111-201ENSMUST00000169981 411 ntTSL 3 BASIC14.03□□□□□ -0.16
Ushbp1Q8R370 Gm16505-201ENSMUST00000179981 232 ntBASIC14.03□□□□□ -0.16
Ushbp1Q8R370 Rps4l-202ENSMUST00000204242 789 ntBASIC14.03□□□□□ -0.16
Ushbp1Q8R370 Gm45339-201ENSMUST00000210823 877 ntTSL 5 BASIC14.03□□□□□ -0.16
Ushbp1Q8R370 Treml1-201ENSMUST00000024792 1235 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
Ushbp1Q8R370 Lrrc52-201ENSMUST00000036643 1143 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Ushbp1Q8R370 Rpl18a-201ENSMUST00000054220 1260 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Ushbp1Q8R370 Mirlet7c-2-201ENSMUST00000083674 95 ntBASIC14.03□□□□□ -0.16
Ushbp1Q8R370 Shank2-203ENSMUST00000105902 8988 ntAPPRIS P1 TSL 5 BASIC14.03□□□□□ -0.16
Ushbp1Q8R370 Gm4735-201ENSMUST00000138679 1302 ntBASIC14.03□□□□□ -0.16
Ushbp1Q8R370 Gm5855-201ENSMUST00000200240 1305 ntBASIC14.03□□□□□ -0.16
Ushbp1Q8R370 Gm37885-201ENSMUST00000192568 1391 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Ushbp1Q8R370 Retreg1-206ENSMUST00000228306 1430 ntBASIC14.03□□□□□ -0.16
Ushbp1Q8R370 Insrr-202ENSMUST00000107582 4694 ntAPPRIS P1 TSL 5 BASIC14.03□□□□□ -0.16
Ushbp1Q8R370 0610037L13Rik-207ENSMUST00000125107 1551 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Ushbp1Q8R370 Hpse2-201ENSMUST00000099428 1779 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Ushbp1Q8R370 Sec61g-203ENSMUST00000109643 1862 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Ushbp1Q8R370 Brf2-201ENSMUST00000033877 1899 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Ushbp1Q8R370 2610037D02Rik-201ENSMUST00000180852 2449 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Ushbp1Q8R370 Slco4a1-202ENSMUST00000038259 3010 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Ushbp1Q8R370 Zbtb20-201ENSMUST00000079441 3086 ntAPPRIS P3 TSL 5 BASIC14.03□□□□□ -0.16
Ushbp1Q8R370 Osbpl1a-201ENSMUST00000074352 3956 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Ushbp1Q8R370 Klhl18-201ENSMUST00000068025 4530 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Ushbp1Q8R370 Lmo7-201ENSMUST00000100337 6092 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Ushbp1Q8R370 Ppp1r12b-201ENSMUST00000045665 8840 ntAPPRIS ALT2 TSL 5 BASIC14.03□□□□□ -0.16
Ushbp1Q8R370 Dag1-204ENSMUST00000191899 5662 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Ushbp1Q8R370 Il7-205ENSMUST00000194279 4858 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Ushbp1Q8R370 Otub2-201ENSMUST00000021620 2791 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Ushbp1Q8R370 Srms-201ENSMUST00000016498 2562 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Ushbp1Q8R370 Gimap3-202ENSMUST00000204036 2145 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Ushbp1Q8R370 Zcchc18-202ENSMUST00000101227 2045 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Ushbp1Q8R370 Trmt1-204ENSMUST00000109768 2044 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.16
Ushbp1Q8R370 Gm10544-202ENSMUST00000181887 1923 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
Ushbp1Q8R370 Pcdh7-203ENSMUST00000191837 8785 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.16
Ushbp1Q8R370 Gm18227-201ENSMUST00000211082 1468 ntBASIC14.02□□□□□ -0.16
Ushbp1Q8R370 Tmem30c-202ENSMUST00000119407 1396 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Ushbp1Q8R370 Rps10-203ENSMUST00000114882 614 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Ushbp1Q8R370 Rbm3-204ENSMUST00000115617 1152 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.17
Ushbp1Q8R370 Gm5863-201ENSMUST00000121760 1008 ntBASIC14.02□□□□□ -0.17
Ushbp1Q8R370 Gm14230-202ENSMUST00000137463 874 ntTSL 2 BASIC14.02□□□□□ -0.17
Ushbp1Q8R370 Lage3-201ENSMUST00000015433 761 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Ushbp1Q8R370 Gm2310-201ENSMUST00000179217 1131 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.17
Ushbp1Q8R370 Olfr1414-202ENSMUST00000189174 1159 ntAPPRIS P1 TSL 3 BASIC14.02□□□□□ -0.17
Ushbp1Q8R370 Gm43138-201ENSMUST00000199123 708 ntBASIC14.02□□□□□ -0.17
Ushbp1Q8R370 Pcbd1-201ENSMUST00000020298 789 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Ushbp1Q8R370 AC164573.1-201ENSMUST00000218616 963 ntTSL 5 BASIC14.02□□□□□ -0.17
Ushbp1Q8R370 AC069562.3-201ENSMUST00000225387 587 ntBASIC14.02□□□□□ -0.17
Ushbp1Q8R370 Mrps21-201ENSMUST00000067298 488 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Ushbp1Q8R370 Saa3-201ENSMUST00000006956 555 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Ushbp1Q8R370 Olfr91-201ENSMUST00000087144 939 ntAPPRIS P1 BASIC14.02□□□□□ -0.17
Ushbp1Q8R370 Plekhg6-201ENSMUST00000042647 3299 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Ushbp1Q8R370 Thtpa-201ENSMUST00000050575 2830 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Ushbp1Q8R370 Gm28043-201ENSMUST00000130871 6521 ntAPPRIS P1 TSL 2 BASIC14.02□□□□□ -0.17
Ushbp1Q8R370 Gm42480-201ENSMUST00000198434 2595 ntBASIC14.02□□□□□ -0.17
Ushbp1Q8R370 Bcl11a-202ENSMUST00000109514 5989 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Ushbp1Q8R370 Setd3-202ENSMUST00000109879 2387 ntTSL 3 BASIC14.02□□□□□ -0.17
Ushbp1Q8R370 Dtnb-201ENSMUST00000077930 2376 ntAPPRIS P2 TSL 1 (best) BASIC14.02□□□□□ -0.17
Ushbp1Q8R370 Eprs-201ENSMUST00000046514 4906 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Retrieved 100 of 76,532 protein–RNA pairs in 45.8 ms