Protein–RNA interactions for Protein: Q8C6K9

Col6a6, Collagen alpha-6(VI) chain, mousemouse

Predictions only

Length 2,265 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col6a6Q8C6K9 Pglyrp2-202ENSMUST00000170392 2068 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Col6a6Q8C6K9 Cwc27-201ENSMUST00000022228 2071 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Col6a6Q8C6K9 Ocrl-203ENSMUST00000115020 3210 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
Col6a6Q8C6K9 Hao1-201ENSMUST00000028704 2045 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Col6a6Q8C6K9 Clec18a-203ENSMUST00000188466 1973 ntAPPRIS ALT2 TSL 5 BASIC11.28□□□□□ -0.6
Col6a6Q8C6K9 Snrk-203ENSMUST00000120173 4758 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Col6a6Q8C6K9 Bbs5-202ENSMUST00000112286 1397 ntTSL 5 BASIC11.28□□□□□ -0.6
Col6a6Q8C6K9 Kcnb1-204ENSMUST00000207917 11153 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Col6a6Q8C6K9 Mir680-2-201ENSMUST00000102163 110 ntBASIC11.28□□□□□ -0.6
Col6a6Q8C6K9 Gm23251-201ENSMUST00000103773 110 ntBASIC11.28□□□□□ -0.6
Col6a6Q8C6K9 Gm13073-201ENSMUST00000134059 486 ntTSL 3 BASIC11.28□□□□□ -0.6
Col6a6Q8C6K9 2610027F03Rik-202ENSMUST00000186982 603 ntTSL 5 BASIC11.28□□□□□ -0.6
Col6a6Q8C6K9 Gm28778-201ENSMUST00000190734 785 ntAPPRIS P1 TSL 3 BASIC11.28□□□□□ -0.6
Col6a6Q8C6K9 Gm6905-201ENSMUST00000205729 511 ntBASIC11.28□□□□□ -0.6
Col6a6Q8C6K9 Gm31401-201ENSMUST00000207352 734 ntTSL 3 BASIC11.28□□□□□ -0.6
Col6a6Q8C6K9 Timm10b-210ENSMUST00000209588 373 ntTSL 3 BASIC11.28□□□□□ -0.6
Col6a6Q8C6K9 AC166992.1-201ENSMUST00000216356 565 ntBASIC11.28□□□□□ -0.6
Col6a6Q8C6K9 AC174797.2-202ENSMUST00000225729 568 ntBASIC11.28□□□□□ -0.6
Col6a6Q8C6K9 AC099645.1-201ENSMUST00000226476 1105 ntBASIC11.28□□□□□ -0.6
Col6a6Q8C6K9 Fnbp1-206ENSMUST00000113555 1776 ntTSL 5 BASIC11.28□□□□□ -0.6
Col6a6Q8C6K9 Scoc-202ENSMUST00000167525 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Col6a6Q8C6K9 Arhgap29-201ENSMUST00000037958 5787 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Col6a6Q8C6K9 Dnm1-214ENSMUST00000201433 3146 ntAPPRIS ALT1 TSL 5 BASIC11.28□□□□□ -0.6
Col6a6Q8C6K9 Mfsd1-201ENSMUST00000029344 3011 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.6
Col6a6Q8C6K9 Fam167a-201ENSMUST00000121288 4231 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.6
Col6a6Q8C6K9 Ate1-204ENSMUST00000178534 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC11.27□□□□□ -0.6
Col6a6Q8C6K9 Tmem168-201ENSMUST00000031554 4587 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.6
Col6a6Q8C6K9 Zfp212-201ENSMUST00000009411 2801 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.6
Col6a6Q8C6K9 Prss30-201ENSMUST00000024936 1470 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.6
Col6a6Q8C6K9 Phldb1-212ENSMUST00000138356 5600 ntTSL 5 BASIC11.27□□□□□ -0.6
Col6a6Q8C6K9 Whamm-203ENSMUST00000209044 1879 ntTSL 1 (best) BASIC11.27□□□□□ -0.6
Col6a6Q8C6K9 Gm18626-201ENSMUST00000221512 1409 ntBASIC11.27□□□□□ -0.6
Col6a6Q8C6K9 Gpr45-203ENSMUST00000179766 3776 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.6
Col6a6Q8C6K9 Rab30-202ENSMUST00000107179 1304 ntTSL 5 BASIC11.27□□□□□ -0.61
Col6a6Q8C6K9 BC052040-203ENSMUST00000166472 2770 ntTSL 1 (best) BASIC11.27□□□□□ -0.61
Col6a6Q8C6K9 Flcn-202ENSMUST00000091246 2768 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Col6a6Q8C6K9 Hadhb-202ENSMUST00000114783 2045 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Col6a6Q8C6K9 Gm12857-201ENSMUST00000117678 592 ntBASIC11.27□□□□□ -0.61
Col6a6Q8C6K9 Gm53-203ENSMUST00000143887 757 ntTSL 3 BASIC11.27□□□□□ -0.61
Col6a6Q8C6K9 Tspo2-205ENSMUST00000162481 473 ntTSL 5 BASIC11.27□□□□□ -0.61
Col6a6Q8C6K9 A430050A11Rik-201ENSMUST00000195348 646 ntBASIC11.27□□□□□ -0.61
Col6a6Q8C6K9 Gm42682-201ENSMUST00000198349 1265 ntBASIC11.27□□□□□ -0.61
Col6a6Q8C6K9 Gm4482-201ENSMUST00000200876 742 ntBASIC11.27□□□□□ -0.61
Col6a6Q8C6K9 CT030637.1-201ENSMUST00000228016 669 ntBASIC11.27□□□□□ -0.61
Col6a6Q8C6K9 Ebna1bp2-201ENSMUST00000030501 2960 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Col6a6Q8C6K9 Rcbtb2-202ENSMUST00000110952 2176 ntAPPRIS P2 TSL 1 (best) BASIC11.27□□□□□ -0.61
Col6a6Q8C6K9 Col9a3-201ENSMUST00000103059 2846 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Col6a6Q8C6K9 Gm16010-202ENSMUST00000145410 4427 ntTSL 1 (best) BASIC11.27□□□□□ -0.61
Col6a6Q8C6K9 Trpv4-202ENSMUST00000112217 2436 ntTSL 5 BASIC11.27□□□□□ -0.61
Col6a6Q8C6K9 Slc39a3-201ENSMUST00000059551 3680 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Col6a6Q8C6K9 Wnt9a-202ENSMUST00000108783 3318 ntAPPRIS P2 TSL 1 (best) BASIC11.27□□□□□ -0.61
Col6a6Q8C6K9 Rnf170-201ENSMUST00000014022 3929 ntAPPRIS P2 TSL 1 (best) BASIC11.27□□□□□ -0.61
Col6a6Q8C6K9 BC055324-201ENSMUST00000045876 3179 ntAPPRIS P2 TSL 1 (best) BASIC11.27□□□□□ -0.61
Col6a6Q8C6K9 Actg2-201ENSMUST00000075161 1333 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Col6a6Q8C6K9 Picalm-213ENSMUST00000208742 3361 ntAPPRIS ALT2 TSL 1 (best) BASIC11.27□□□□□ -0.61
Col6a6Q8C6K9 D630023F18Rik-201ENSMUST00000050047 2180 ntAPPRIS P3 TSL 1 (best) BASIC11.27□□□□□ -0.61
Col6a6Q8C6K9 Coa3-202ENSMUST00000168089 291 ntTSL 3 BASIC11.26□□□□□ -0.61
Col6a6Q8C6K9 Lysmd4-208ENSMUST00000208698 551 ntAPPRIS ALT2 TSL 2 BASIC11.26□□□□□ -0.61
Col6a6Q8C6K9 Pym1-203ENSMUST00000218218 1143 ntTSL 3 BASIC11.26□□□□□ -0.61
Col6a6Q8C6K9 Gm40983-201ENSMUST00000222524 502 ntTSL 3 BASIC11.26□□□□□ -0.61
Col6a6Q8C6K9 Nceh1-202ENSMUST00000091284 830 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
Col6a6Q8C6K9 Taar7e-201ENSMUST00000092656 1077 ntAPPRIS P1 BASIC11.26□□□□□ -0.61
Col6a6Q8C6K9 Tagln3-201ENSMUST00000096057 1240 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Col6a6Q8C6K9 Gan-201ENSMUST00000064488 2652 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Col6a6Q8C6K9 Pigq-209ENSMUST00000140304 1835 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
Col6a6Q8C6K9 6030442K20Rik-201ENSMUST00000180835 1540 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
Col6a6Q8C6K9 Dnmt3l-202ENSMUST00000123940 1452 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
Col6a6Q8C6K9 Sumf2-204ENSMUST00000171300 2264 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Col6a6Q8C6K9 Tmcc2-206ENSMUST00000142609 2769 ntAPPRIS ALT2 TSL 1 (best) BASIC11.26□□□□□ -0.61
Col6a6Q8C6K9 Gm16853-201ENSMUST00000181812 1986 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
Col6a6Q8C6K9 Shroom3-202ENSMUST00000113054 6401 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
Col6a6Q8C6K9 Vasp-201ENSMUST00000032561 2215 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Col6a6Q8C6K9 Rsrc1-206ENSMUST00000162036 1406 ntAPPRIS P2 TSL 5 BASIC11.26□□□□□ -0.61
Col6a6Q8C6K9 Edem3-201ENSMUST00000059498 6327 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Col6a6Q8C6K9 Tctn3-203ENSMUST00000135795 1686 ntAPPRIS ALT2 TSL 1 (best) BASIC11.26□□□□□ -0.61
Col6a6Q8C6K9 Zfp286-211ENSMUST00000207597 1668 ntTSL 5 BASIC11.26□□□□□ -0.61
Col6a6Q8C6K9 4930470G03Rik-201ENSMUST00000122926 2447 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
Col6a6Q8C6K9 Ppp4r3b-201ENSMUST00000020755 5125 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Col6a6Q8C6K9 Dusp19-201ENSMUST00000028384 1632 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Col6a6Q8C6K9 Cdkn1b-201ENSMUST00000003115 2393 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Col6a6Q8C6K9 Tubb2a-201ENSMUST00000056427 1610 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Col6a6Q8C6K9 Mta2-201ENSMUST00000096240 3135 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Col6a6Q8C6K9 Gm33195-201ENSMUST00000220827 2337 ntTSL 5 BASIC11.26□□□□□ -0.61
Col6a6Q8C6K9 Gart-201ENSMUST00000023684 3518 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Col6a6Q8C6K9 Plcg1-203ENSMUST00000109462 5107 ntAPPRIS P1 TSL 5 BASIC11.26□□□□□ -0.61
Col6a6Q8C6K9 Ubtf-203ENSMUST00000107115 3199 ntAPPRIS ALT2 TSL 5 BASIC11.26□□□□□ -0.61
Col6a6Q8C6K9 Mak-202ENSMUST00000070193 2937 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
Col6a6Q8C6K9 Tle3-204ENSMUST00000159386 4527 ntAPPRIS ALT2 TSL 5 BASIC11.26□□□□□ -0.61
Col6a6Q8C6K9 Gm5863-201ENSMUST00000121760 1008 ntBASIC11.26□□□□□ -0.61
Col6a6Q8C6K9 Rps2-ps4-201ENSMUST00000121977 633 ntBASIC11.26□□□□□ -0.61
Col6a6Q8C6K9 Gm11211-201ENSMUST00000143618 359 ntTSL 3 BASIC11.26□□□□□ -0.61
Col6a6Q8C6K9 B230119M05Rik-201ENSMUST00000154072 979 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
Col6a6Q8C6K9 1110008E08Rik-202ENSMUST00000183621 723 ntBASIC11.26□□□□□ -0.61
Col6a6Q8C6K9 8030442B05Rik-201ENSMUST00000192626 1035 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
Col6a6Q8C6K9 CT485607.1-201ENSMUST00000216100 85 ntBASIC11.26□□□□□ -0.61
Col6a6Q8C6K9 AC153954.1-201ENSMUST00000216959 255 ntBASIC11.26□□□□□ -0.61
Col6a6Q8C6K9 Snora73b-201ENSMUST00000083419 205 ntBASIC11.26□□□□□ -0.61
Col6a6Q8C6K9 Ppm1b-204ENSMUST00000112307 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC11.26□□□□□ -0.61
Col6a6Q8C6K9 Sbno2-209ENSMUST00000219260 4850 ntAPPRIS P1 TSL 5 BASIC11.26□□□□□ -0.61
Col6a6Q8C6K9 Acin1-202ENSMUST00000022794 2365 ntAPPRIS ALT2 TSL 5 BASIC11.26□□□□□ -0.61
Retrieved 100 of 76,532 protein–RNA pairs in 35.8 ms