Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Smad4-202ENSMUST00000114939 2233 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Usp40Q8BWR4 Pggt1b-201ENSMUST00000025354 2736 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Usp40Q8BWR4 Mlh1-201ENSMUST00000035079 2754 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Usp40Q8BWR4 Shpk-201ENSMUST00000006105 2808 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Usp40Q8BWR4 Dnajc6-205ENSMUST00000106933 5191 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Usp40Q8BWR4 Ttc34-201ENSMUST00000050220 3200 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Usp40Q8BWR4 Tcf12-202ENSMUST00000183404 6299 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
Usp40Q8BWR4 Hemk1-202ENSMUST00000118051 453 ntTSL 3 BASIC17.09■□□□□ 0.33
Usp40Q8BWR4 Gm6335-201ENSMUST00000118081 1194 ntBASIC17.09■□□□□ 0.33
Usp40Q8BWR4 Gm7816-201ENSMUST00000119884 1194 ntBASIC17.09■□□□□ 0.33
Usp40Q8BWR4 Gm15542-201ENSMUST00000121585 1194 ntBASIC17.09■□□□□ 0.33
Usp40Q8BWR4 Gm15906-201ENSMUST00000124746 323 ntTSL 5 BASIC17.09■□□□□ 0.33
Usp40Q8BWR4 Gm14396-201ENSMUST00000126966 548 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Usp40Q8BWR4 Gm11379-201ENSMUST00000154678 381 ntTSL 3 BASIC17.09■□□□□ 0.33
Usp40Q8BWR4 Gm22334-201ENSMUST00000158070 133 ntBASIC17.09■□□□□ 0.33
Usp40Q8BWR4 Gm8546-201ENSMUST00000178288 1264 ntBASIC17.09■□□□□ 0.33
Usp40Q8BWR4 Gm43584-201ENSMUST00000199762 605 ntTSL 3 BASIC17.09■□□□□ 0.33
Usp40Q8BWR4 4930569F06Rik-201ENSMUST00000036821 433 ntBASIC17.09■□□□□ 0.33
Usp40Q8BWR4 Gm11555-201ENSMUST00000073126 492 ntTSL 5 BASIC17.09■□□□□ 0.33
Usp40Q8BWR4 Sftpd-201ENSMUST00000077136 1275 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Usp40Q8BWR4 Ddhd1-202ENSMUST00000087320 9820 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Usp40Q8BWR4 Gm36855-203ENSMUST00000216660 1406 ntTSL 5 BASIC17.09■□□□□ 0.33
Usp40Q8BWR4 Zfp369-203ENSMUST00000130799 1580 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Usp40Q8BWR4 Tbc1d5-205ENSMUST00000224528 4764 ntAPPRIS ALT2 BASIC17.09■□□□□ 0.33
Usp40Q8BWR4 0610040F04Rik-201ENSMUST00000137478 1734 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Usp40Q8BWR4 Capn5-202ENSMUST00000107112 2232 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Usp40Q8BWR4 Atxn10-201ENSMUST00000163242 2425 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Usp40Q8BWR4 Gm37691-201ENSMUST00000192147 2573 ntBASIC17.09■□□□□ 0.33
Usp40Q8BWR4 Aifm3-201ENSMUST00000023448 2688 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
Usp40Q8BWR4 B4galnt3-203ENSMUST00000212457 2958 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
Usp40Q8BWR4 March8-213ENSMUST00000203193 4245 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Usp40Q8BWR4 Leng8-201ENSMUST00000037472 5105 ntAPPRIS P2 TSL 1 (best) BASIC17.08■□□□□ 0.33
Usp40Q8BWR4 Adamts7-202ENSMUST00000113060 5098 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.33
Usp40Q8BWR4 Gga3-202ENSMUST00000106508 3582 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.33
Usp40Q8BWR4 Nol10-201ENSMUST00000046011 3021 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Usp40Q8BWR4 Col26a1-202ENSMUST00000111103 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.33
Usp40Q8BWR4 Parp16-202ENSMUST00000213396 2518 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Usp40Q8BWR4 Mcfd2-204ENSMUST00000144236 2015 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Usp40Q8BWR4 Slc2a4-203ENSMUST00000141837 1776 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
Usp40Q8BWR4 4930488B22Rik-201ENSMUST00000172500 1722 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
Usp40Q8BWR4 Tle3-204ENSMUST00000159386 4527 ntAPPRIS ALT2 TSL 5 BASIC17.08■□□□□ 0.32
Usp40Q8BWR4 Tectb-202ENSMUST00000120936 1349 ntTSL 5 BASIC17.08■□□□□ 0.32
Usp40Q8BWR4 Hexim2-202ENSMUST00000107037 1221 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.32
Usp40Q8BWR4 Cstl1-202ENSMUST00000109954 454 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
Usp40Q8BWR4 Tpm1-210ENSMUST00000113693 1054 ntTSL 5 BASIC17.08■□□□□ 0.32
Usp40Q8BWR4 Gm12201-201ENSMUST00000120657 1234 ntBASIC17.08■□□□□ 0.32
Usp40Q8BWR4 Gm13587-201ENSMUST00000152645 366 ntTSL 5 BASIC17.08■□□□□ 0.32
Usp40Q8BWR4 Rprl1-201ENSMUST00000158050 327 ntBASIC17.08■□□□□ 0.32
Usp40Q8BWR4 Ggps1-204ENSMUST00000221713 667 ntTSL 3 BASIC17.08■□□□□ 0.32
Usp40Q8BWR4 Spcs1-203ENSMUST00000226374 592 ntBASIC17.08■□□□□ 0.32
Usp40Q8BWR4 Csnk2b-201ENSMUST00000025246 961 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Usp40Q8BWR4 Cga-201ENSMUST00000029975 687 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Usp40Q8BWR4 Ifi27-205ENSMUST00000085065 977 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
Usp40Q8BWR4 Hist1h3a-201ENSMUST00000091701 534 ntAPPRIS P1 BASIC17.08■□□□□ 0.32
Usp40Q8BWR4 Nrg1-201ENSMUST00000073884 2452 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
Usp40Q8BWR4 Fancc-218ENSMUST00000220684 2006 ntTSL 5 BASIC17.08■□□□□ 0.32
Usp40Q8BWR4 Gm42928-201ENSMUST00000197338 3339 ntBASIC17.08■□□□□ 0.32
Usp40Q8BWR4 Cyp2j13-203ENSMUST00000107078 1493 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Usp40Q8BWR4 Afap1l1-201ENSMUST00000120472 3444 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Usp40Q8BWR4 Zer1-202ENSMUST00000113677 4189 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Usp40Q8BWR4 6030443J06Rik-202ENSMUST00000181374 1353 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Usp40Q8BWR4 Ccdc187-201ENSMUST00000057224 3148 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Usp40Q8BWR4 AC154262.2-202ENSMUST00000225158 1331 ntBASIC17.07■□□□□ 0.32
Usp40Q8BWR4 Rnf133-201ENSMUST00000063548 1308 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Usp40Q8BWR4 Lrp8os2-204ENSMUST00000188737 3078 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Usp40Q8BWR4 Ccl27a-203ENSMUST00000108033 428 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Usp40Q8BWR4 Gm15884-201ENSMUST00000143765 643 ntTSL 3 BASIC17.07■□□□□ 0.32
Usp40Q8BWR4 Gm17827-201ENSMUST00000211825 742 ntBASIC17.07■□□□□ 0.32
Usp40Q8BWR4 AC153954.1-201ENSMUST00000216959 255 ntBASIC17.07■□□□□ 0.32
Usp40Q8BWR4 Olfr1347-205ENSMUST00000220413 964 ntBASIC17.07■□□□□ 0.32
Usp40Q8BWR4 Gm270-201ENSMUST00000223010 976 ntBASIC17.07■□□□□ 0.32
Usp40Q8BWR4 Olfr1347-201ENSMUST00000036357 964 ntAPPRIS P1 BASIC17.07■□□□□ 0.32
Usp40Q8BWR4 Asap1-218ENSMUST00000177374 4582 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
Usp40Q8BWR4 Nek7-202ENSMUST00000186017 5258 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Usp40Q8BWR4 Dpysl5-203ENSMUST00000114729 5191 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Usp40Q8BWR4 Rtbdn-201ENSMUST00000067472 1908 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Usp40Q8BWR4 Cldn15-201ENSMUST00000001790 1850 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Usp40Q8BWR4 Tspan32-202ENSMUST00000075172 1876 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
Usp40Q8BWR4 Tsc2-205ENSMUST00000226398 5459 ntAPPRIS P2 BASIC17.07■□□□□ 0.32
Usp40Q8BWR4 Cldn18-202ENSMUST00000112882 1750 ntAPPRIS ALT1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Usp40Q8BWR4 Micu1-204ENSMUST00000165563 2442 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
Usp40Q8BWR4 Gtf2i-201ENSMUST00000059042 4455 ntAPPRIS P4 TSL 1 (best) BASIC17.07■□□□□ 0.32
Usp40Q8BWR4 Ralgps2-214ENSMUST00000191605 2958 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
Usp40Q8BWR4 Spo11-203ENSMUST00000109126 1625 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Usp40Q8BWR4 Mst1-201ENSMUST00000035211 2262 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Usp40Q8BWR4 5330413P13Rik-204ENSMUST00000210606 1464 ntTSL 5 BASIC17.06■□□□□ 0.32
Usp40Q8BWR4 Grm6-201ENSMUST00000000631 4291 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
Usp40Q8BWR4 C1qtnf9-201ENSMUST00000025940 1903 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Usp40Q8BWR4 Spred3-201ENSMUST00000048923 4056 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Usp40Q8BWR4 Prrc2a-206ENSMUST00000174805 6741 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Usp40Q8BWR4 Gm37861-201ENSMUST00000193534 2869 ntBASIC17.06■□□□□ 0.32
Usp40Q8BWR4 AC159308.2-201ENSMUST00000213592 2325 ntBASIC17.06■□□□□ 0.32
Usp40Q8BWR4 Gm7722-201ENSMUST00000120646 741 ntBASIC17.06■□□□□ 0.32
Usp40Q8BWR4 Gm7568-202ENSMUST00000160446 709 ntTSL 3 BASIC17.06■□□□□ 0.32
Usp40Q8BWR4 Arid3b-204ENSMUST00000164010 1259 ntTSL 5 BASIC17.06■□□□□ 0.32
Usp40Q8BWR4 Rps13-ps2-201ENSMUST00000182017 453 ntBASIC17.06■□□□□ 0.32
Usp40Q8BWR4 Gm18038-201ENSMUST00000197900 485 ntBASIC17.06■□□□□ 0.32
Usp40Q8BWR4 Rbakdn-201ENSMUST00000198334 520 ntTSL 2 BASIC17.06■□□□□ 0.32
Usp40Q8BWR4 D530033B14Rik-202ENSMUST00000206282 216 ntBASIC17.06■□□□□ 0.32
Usp40Q8BWR4 5330413P13Rik-205ENSMUST00000210961 913 ntTSL 5 BASIC17.06■□□□□ 0.32
Retrieved 100 of 76,532 protein–RNA pairs in 31.1 ms