Protein–RNA interactions for Protein: Q5SNZ0

Ccdc88a, Girdin, mousemouse

Predictions only

Length 1,873 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88aQ5SNZ0 Trhr2-201ENSMUST00000044123 1340 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Ccdc88aQ5SNZ0 Kcnh1-201ENSMUST00000078470 7242 ntAPPRIS P3 TSL 1 (best) BASIC14.28□□□□□ -0.12
Ccdc88aQ5SNZ0 Dync1i2-202ENSMUST00000100028 2097 ntTSL 5 BASIC14.28□□□□□ -0.12
Ccdc88aQ5SNZ0 Spred1-201ENSMUST00000028829 6016 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Ccdc88aQ5SNZ0 Sfxn3-203ENSMUST00000111954 2867 ntTSL 5 BASIC14.28□□□□□ -0.12
Ccdc88aQ5SNZ0 Jade1-204ENSMUST00000170711 2896 ntTSL 5 BASIC14.28□□□□□ -0.12
Ccdc88aQ5SNZ0 Smg5-201ENSMUST00000001451 4448 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Ccdc88aQ5SNZ0 Tspan32-202ENSMUST00000075172 1876 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.12
Ccdc88aQ5SNZ0 Ebp-201ENSMUST00000033509 1743 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Ccdc88aQ5SNZ0 Nudt5-205ENSMUST00000179748 1590 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.12
Ccdc88aQ5SNZ0 AI597479-201ENSMUST00000010434 3458 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Ccdc88aQ5SNZ0 Dpm2-203ENSMUST00000140592 1412 ntTSL 5 BASIC14.27□□□□□ -0.12
Ccdc88aQ5SNZ0 Mms22l-201ENSMUST00000050446 4261 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
Ccdc88aQ5SNZ0 Gm26599-201ENSMUST00000180590 3189 ntTSL 5 BASIC14.27□□□□□ -0.12
Ccdc88aQ5SNZ0 Frmd4b-203ENSMUST00000113355 4913 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
Ccdc88aQ5SNZ0 S100a16-206ENSMUST00000107335 926 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.12
Ccdc88aQ5SNZ0 Gm12816-201ENSMUST00000118069 1212 ntBASIC14.27□□□□□ -0.12
Ccdc88aQ5SNZ0 Gm12690-201ENSMUST00000132108 354 ntTSL 3 BASIC14.27□□□□□ -0.12
Ccdc88aQ5SNZ0 Adap2os-201ENSMUST00000140556 984 ntTSL 5 BASIC14.27□□□□□ -0.12
Ccdc88aQ5SNZ0 Malat1-204ENSMUST00000173523 656 ntTSL 3 BASIC14.27□□□□□ -0.12
Ccdc88aQ5SNZ0 Gm27627-201ENSMUST00000183644 150 ntBASIC14.27□□□□□ -0.12
Ccdc88aQ5SNZ0 Pex1-208ENSMUST00000195894 528 ntTSL 3 BASIC14.27□□□□□ -0.12
Ccdc88aQ5SNZ0 Gm36503-201ENSMUST00000204284 875 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
Ccdc88aQ5SNZ0 Gm40652-201ENSMUST00000218944 895 ntTSL 5 BASIC14.27□□□□□ -0.12
Ccdc88aQ5SNZ0 Azgp1-201ENSMUST00000035390 1297 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Ccdc88aQ5SNZ0 Gm9996-201ENSMUST00000070359 913 ntBASIC14.27□□□□□ -0.12
Ccdc88aQ5SNZ0 Gm5879-201ENSMUST00000089501 1209 ntBASIC14.27□□□□□ -0.12
Ccdc88aQ5SNZ0 Ocrl-203ENSMUST00000115020 3210 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
Ccdc88aQ5SNZ0 Tmx2-203ENSMUST00000111665 2282 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Ccdc88aQ5SNZ0 Gm6034-201ENSMUST00000097331 1633 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Ccdc88aQ5SNZ0 Sec14l5-201ENSMUST00000165810 2337 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Ccdc88aQ5SNZ0 Sim2-201ENSMUST00000072182 3670 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Ccdc88aQ5SNZ0 Ripor2-201ENSMUST00000038477 3371 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.13
Ccdc88aQ5SNZ0 Fank1-201ENSMUST00000065359 2004 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Ccdc88aQ5SNZ0 Tgm1-202ENSMUST00000168729 2852 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.13
Ccdc88aQ5SNZ0 Ppp1r9b-202ENSMUST00000107748 3095 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.13
Ccdc88aQ5SNZ0 Rab22a-201ENSMUST00000029024 7155 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Ccdc88aQ5SNZ0 Shisa9-202ENSMUST00000170672 3421 ntAPPRIS P4 TSL 1 (best) BASIC14.27□□□□□ -0.13
Ccdc88aQ5SNZ0 Kcnt1-211ENSMUST00000171268 3771 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.13
Ccdc88aQ5SNZ0 Pcdhb1-201ENSMUST00000052366 2588 ntAPPRIS P1 BASIC14.27□□□□□ -0.13
Ccdc88aQ5SNZ0 Stx3-203ENSMUST00000075304 2430 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
Ccdc88aQ5SNZ0 Kcnh1-202ENSMUST00000110844 7161 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.13
Ccdc88aQ5SNZ0 Mark2-215ENSMUST00000168872 2124 ntAPPRIS ALT2 TSL 5 BASIC14.27□□□□□ -0.13
Ccdc88aQ5SNZ0 Gm13814-201ENSMUST00000141341 3077 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
Ccdc88aQ5SNZ0 Gm9062-201ENSMUST00000117712 727 ntBASIC14.27□□□□□ -0.13
Ccdc88aQ5SNZ0 H2-M6-ps-201ENSMUST00000119193 1034 ntBASIC14.27□□□□□ -0.13
Ccdc88aQ5SNZ0 Nras-208ENSMUST00000200069 831 ntAPPRIS P1 TSL 2 BASIC14.27□□□□□ -0.13
Ccdc88aQ5SNZ0 Gm4607-201ENSMUST00000206649 577 ntBASIC14.27□□□□□ -0.13
Ccdc88aQ5SNZ0 Mrpl23-206ENSMUST00000210662 736 ntAPPRIS ALT2 TSL 5 BASIC14.27□□□□□ -0.13
Ccdc88aQ5SNZ0 Immp1l-201ENSMUST00000037499 955 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Ccdc88aQ5SNZ0 Tas2r126-201ENSMUST00000059534 930 ntAPPRIS P1 BASIC14.27□□□□□ -0.13
Ccdc88aQ5SNZ0 Ppp1r2-ps3-201ENSMUST00000078012 627 ntBASIC14.27□□□□□ -0.13
Ccdc88aQ5SNZ0 Nat8f3-201ENSMUST00000050780 1821 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Ccdc88aQ5SNZ0 Islr2-201ENSMUST00000114144 3880 ntAPPRIS P3 TSL 2 BASIC14.27□□□□□ -0.13
Ccdc88aQ5SNZ0 Lnx1-209ENSMUST00000153543 2208 ntTSL 5 BASIC14.27□□□□□ -0.13
Ccdc88aQ5SNZ0 Gucd1-201ENSMUST00000039796 3500 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Ccdc88aQ5SNZ0 Phyhd1-212ENSMUST00000154647 1678 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Ccdc88aQ5SNZ0 Galnt6-201ENSMUST00000052069 3798 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Ccdc88aQ5SNZ0 Inpp4b-215ENSMUST00000217122 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
Ccdc88aQ5SNZ0 Slc29a2-201ENSMUST00000025826 2472 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Ccdc88aQ5SNZ0 Zfp961-202ENSMUST00000131237 2689 ntAPPRIS ALT2 TSL 3 BASIC14.26□□□□□ -0.13
Ccdc88aQ5SNZ0 Atp2b3-202ENSMUST00000088429 4483 ntAPPRIS P2 TSL 1 (best) BASIC14.26□□□□□ -0.13
Ccdc88aQ5SNZ0 Plekhd1-201ENSMUST00000140770 3535 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Ccdc88aQ5SNZ0 Gm6580-201ENSMUST00000117504 1357 ntBASIC14.26□□□□□ -0.13
Ccdc88aQ5SNZ0 Cdk7-201ENSMUST00000091299 1988 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Ccdc88aQ5SNZ0 Stum-201ENSMUST00000136521 6506 ntAPPRIS P2 TSL 1 (best) BASIC14.26□□□□□ -0.13
Ccdc88aQ5SNZ0 Cplx1-201ENSMUST00000046892 2189 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Ccdc88aQ5SNZ0 Mapk8ip3-203ENSMUST00000115229 5603 ntAPPRIS ALT2 TSL 5 BASIC14.26□□□□□ -0.13
Ccdc88aQ5SNZ0 Cog3-201ENSMUST00000049168 4222 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Ccdc88aQ5SNZ0 Mmgt2-203ENSMUST00000129162 1828 ntAPPRIS P1 TSL 5 BASIC14.26□□□□□ -0.13
Ccdc88aQ5SNZ0 C130073E24Rik-201ENSMUST00000210222 6144 ntTSL 5 BASIC14.26□□□□□ -0.13
Ccdc88aQ5SNZ0 Ctps2-206ENSMUST00000112303 3289 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Ccdc88aQ5SNZ0 Gm11946-201ENSMUST00000123459 3941 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Ccdc88aQ5SNZ0 Fam227a-202ENSMUST00000109646 1896 ntTSL 5 BASIC14.26□□□□□ -0.13
Ccdc88aQ5SNZ0 Dio1-201ENSMUST00000082426 1690 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Ccdc88aQ5SNZ0 Kcnc1-201ENSMUST00000025202 7760 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Ccdc88aQ5SNZ0 Tprkb-203ENSMUST00000113751 692 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Ccdc88aQ5SNZ0 Gm13703-201ENSMUST00000150705 449 ntTSL 2 BASIC14.26□□□□□ -0.13
Ccdc88aQ5SNZ0 Mir7686-201ENSMUST00000200604 57 ntBASIC14.26□□□□□ -0.13
Ccdc88aQ5SNZ0 4930589O11Rik-201ENSMUST00000200768 920 ntBASIC14.26□□□□□ -0.13
Ccdc88aQ5SNZ0 Gm32352-201ENSMUST00000212465 688 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Ccdc88aQ5SNZ0 Elovl1-202ENSMUST00000067896 1137 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Ccdc88aQ5SNZ0 Gba-202ENSMUST00000167998 1938 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Ccdc88aQ5SNZ0 Glo1-201ENSMUST00000024823 1935 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Ccdc88aQ5SNZ0 Zscan10-202ENSMUST00000115509 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
Ccdc88aQ5SNZ0 Zfp433-202ENSMUST00000200889 2384 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Ccdc88aQ5SNZ0 Gm32687-201ENSMUST00000220314 2379 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Ccdc88aQ5SNZ0 Rhot1-204ENSMUST00000092857 3687 ntAPPRIS P3 TSL 1 (best) BASIC14.26□□□□□ -0.13
Ccdc88aQ5SNZ0 AC154262.2-202ENSMUST00000225158 1331 ntBASIC14.26□□□□□ -0.13
Ccdc88aQ5SNZ0 Cyth1-201ENSMUST00000017276 3135 ntAPPRIS ALT1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Ccdc88aQ5SNZ0 Rims3-201ENSMUST00000071093 6505 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Ccdc88aQ5SNZ0 Mtcl1-211ENSMUST00000177034 5441 ntAPPRIS ALT2 TSL 5 BASIC14.26□□□□□ -0.13
Ccdc88aQ5SNZ0 Gsdmcl-ps-203ENSMUST00000188367 1375 ntBASIC14.26□□□□□ -0.13
Ccdc88aQ5SNZ0 Epha2-201ENSMUST00000006614 3913 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Ccdc88aQ5SNZ0 Dnaja1-210ENSMUST00000164233 5622 ntAPPRIS P1 TSL 5 BASIC14.26□□□□□ -0.13
Ccdc88aQ5SNZ0 Pex3-201ENSMUST00000019945 2129 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Ccdc88aQ5SNZ0 Kcng1-202ENSMUST00000109191 4089 ntAPPRIS P1 TSL 5 BASIC14.26□□□□□ -0.13
Ccdc88aQ5SNZ0 Cldn18-202ENSMUST00000112882 1750 ntAPPRIS ALT1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Ccdc88aQ5SNZ0 Kif11-201ENSMUST00000012587 4819 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Ccdc88aQ5SNZ0 Gm11941-201ENSMUST00000119904 610 ntBASIC14.25□□□□□ -0.13
Retrieved 100 of 76,532 protein–RNA pairs in 77.9 ms