Protein–RNA interactions for Protein: P53564

Cux1, Homeobox protein cut-like 1, mousemouse

Predictions only

Length 1,515 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cux1P53564 Foxp1-205ENSMUST00000113324 2121 ntTSL 5 BASIC18.92■□□□□ 0.62
Cux1P53564 Foxp1-207ENSMUST00000113328 2121 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
Cux1P53564 Foxp1-228ENSMUST00000177307 2121 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
Cux1P53564 Galns-203ENSMUST00000212319 2111 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
Cux1P53564 Senp3-201ENSMUST00000005336 2313 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Cux1P53564 Fam83e-201ENSMUST00000129507 2908 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Cux1P53564 Add3-202ENSMUST00000050096 4488 ntAPPRIS ALT1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Cux1P53564 Rita1-207ENSMUST00000177800 1668 ntAPPRIS P1 TSL 5 BASIC18.92■□□□□ 0.62
Cux1P53564 Gm14314-201ENSMUST00000118225 1015 ntBASIC18.92■□□□□ 0.62
Cux1P53564 Gm14585-201ENSMUST00000120713 634 ntBASIC18.92■□□□□ 0.62
Cux1P53564 Gm28037-201ENSMUST00000122365 611 ntTSL 3 BASIC18.92■□□□□ 0.62
Cux1P53564 Gm13703-201ENSMUST00000150705 449 ntTSL 2 BASIC18.92■□□□□ 0.62
Cux1P53564 Gm24844-201ENSMUST00000158679 127 ntBASIC18.92■□□□□ 0.62
Cux1P53564 Rwdd2a-202ENSMUST00000179212 1130 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Cux1P53564 Gm27241-202ENSMUST00000185013 570 ntTSL 2 BASIC18.92■□□□□ 0.62
Cux1P53564 Ighv6-7-201ENSMUST00000193397 357 ntAPPRIS P1 BASIC18.92■□□□□ 0.62
Cux1P53564 Gm45460-201ENSMUST00000211385 1038 ntTSL 5 BASIC18.92■□□□□ 0.62
Cux1P53564 AC155712.2-201ENSMUST00000220398 643 ntTSL 3 BASIC18.92■□□□□ 0.62
Cux1P53564 Proser2-202ENSMUST00000114942 4398 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Cux1P53564 Aaas-201ENSMUST00000041208 1816 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Cux1P53564 Tnk2-201ENSMUST00000115120 2794 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
Cux1P53564 Gm45266-201ENSMUST00000210111 2173 ntBASIC18.92■□□□□ 0.62
Cux1P53564 Zdhhc20-205ENSMUST00000226057 2179 ntAPPRIS ALT2 BASIC18.92■□□□□ 0.62
Cux1P53564 Cnih4-204ENSMUST00000134115 3268 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Cux1P53564 4930563E18Rik-201ENSMUST00000180948 1553 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
Cux1P53564 Lgr6-201ENSMUST00000044828 6675 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Cux1P53564 Mapk3-203ENSMUST00000091328 1716 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
Cux1P53564 2610037D02Rik-201ENSMUST00000180852 2449 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
Cux1P53564 Slc8b1-204ENSMUST00000111890 2775 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
Cux1P53564 Islr-201ENSMUST00000041477 2223 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Cux1P53564 Tubb4a-201ENSMUST00000071135 2228 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Cux1P53564 Tle6-201ENSMUST00000072020 2015 ntAPPRIS P3 TSL 1 (best) BASIC18.91■□□□□ 0.62
Cux1P53564 Hnrnpk-232ENSMUST00000225674 2704 ntBASIC18.91■□□□□ 0.62
Cux1P53564 Rbbp5-207ENSMUST00000190997 2856 ntAPPRIS P2 TSL 1 (best) BASIC18.91■□□□□ 0.62
Cux1P53564 Gm22920-201ENSMUST00000102175 109 ntBASIC18.91■□□□□ 0.62
Cux1P53564 Use1-202ENSMUST00000110053 1064 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
Cux1P53564 Gm11836-201ENSMUST00000121022 441 ntBASIC18.91■□□□□ 0.62
Cux1P53564 Gm18159-201ENSMUST00000174516 1070 ntBASIC18.91■□□□□ 0.62
Cux1P53564 Gadd45a-206ENSMUST00000204282 460 ntTSL 5 BASIC18.91■□□□□ 0.62
Cux1P53564 Hist1h1b-201ENSMUST00000080511 743 ntAPPRIS P1 BASIC18.91■□□□□ 0.62
Cux1P53564 Arih1-207ENSMUST00000171975 6971 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Cux1P53564 Adamtsl4-202ENSMUST00000117782 4036 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Cux1P53564 Bcl6-201ENSMUST00000023151 3525 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Cux1P53564 Kcna6-202ENSMUST00000112242 3464 ntAPPRIS P1 BASIC18.91■□□□□ 0.62
Cux1P53564 Klc2-202ENSMUST00000113727 2874 ntTSL 5 BASIC18.91■□□□□ 0.62
Cux1P53564 Serinc2-202ENSMUST00000120126 1452 ntAPPRIS ALT2 TSL 5 BASIC18.91■□□□□ 0.62
Cux1P53564 Msh4-201ENSMUST00000005630 3325 ntAPPRIS P3 TSL 1 (best) BASIC18.91■□□□□ 0.62
Cux1P53564 Usp53-202ENSMUST00000197314 3586 ntTSL 5 BASIC18.9■□□□□ 0.62
Cux1P53564 Gm23912-201ENSMUST00000104687 87 ntBASIC18.9■□□□□ 0.62
Cux1P53564 Tsc22d1-206ENSMUST00000134109 801 ntTSL 2 BASIC18.9■□□□□ 0.62
Cux1P53564 Gm44793-201ENSMUST00000136923 582 ntTSL 2 BASIC18.9■□□□□ 0.62
Cux1P53564 4930471C06Rik-202ENSMUST00000143070 579 ntTSL 3 BASIC18.9■□□□□ 0.62
Cux1P53564 Gm16347-202ENSMUST00000149000 772 ntTSL 3 BASIC18.9■□□□□ 0.62
Cux1P53564 Gm3150-201ENSMUST00000166418 204 ntBASIC18.9■□□□□ 0.62
Cux1P53564 4930562C15Rik-202ENSMUST00000171105 1299 ntTSL 2 BASIC18.9■□□□□ 0.62
Cux1P53564 Gm4034-201ENSMUST00000187674 480 ntBASIC18.9■□□□□ 0.62
Cux1P53564 Gm34809-203ENSMUST00000222945 509 ntTSL 5 BASIC18.9■□□□□ 0.62
Cux1P53564 1700013F07Rik-201ENSMUST00000029485 661 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Cux1P53564 Tssk4-201ENSMUST00000007735 1420 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
Cux1P53564 Clec4b1-202ENSMUST00000078559 748 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
Cux1P53564 Gm5537-201ENSMUST00000091117 1252 ntBASIC18.9■□□□□ 0.62
Cux1P53564 1810009A15Rik-201ENSMUST00000096251 806 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Cux1P53564 Npr3-201ENSMUST00000066529 6892 ntAPPRIS P2 TSL 1 (best) BASIC18.9■□□□□ 0.62
Cux1P53564 Zfp61-208ENSMUST00000165241 1668 ntAPPRIS P1 TSL 5 BASIC18.9■□□□□ 0.62
Cux1P53564 Elavl3-201ENSMUST00000003501 5014 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Cux1P53564 Podn-202ENSMUST00000106708 2947 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Cux1P53564 Pramel1-201ENSMUST00000037419 2794 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Cux1P53564 Ccdc88c-202ENSMUST00000085096 6313 ntAPPRIS ALT2 TSL 5 BASIC18.9■□□□□ 0.62
Cux1P53564 Thrb-203ENSMUST00000091471 1758 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Cux1P53564 Gm38346-201ENSMUST00000192379 2639 ntBASIC18.9■□□□□ 0.62
Cux1P53564 Rad51c-201ENSMUST00000007790 1632 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
Cux1P53564 Tmem201-201ENSMUST00000054459 4631 ntAPPRIS ALT2 TSL 2 BASIC18.9■□□□□ 0.62
Cux1P53564 Rbm33-204ENSMUST00000114884 6256 ntAPPRIS ALT2 TSL 5 BASIC18.9■□□□□ 0.62
Cux1P53564 Gigyf1-201ENSMUST00000031727 5440 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Cux1P53564 Prc1-211ENSMUST00000174199 2128 ntTSL 5 BASIC18.9■□□□□ 0.62
Cux1P53564 Fam71f1-201ENSMUST00000090487 1584 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
Cux1P53564 Slc25a32-201ENSMUST00000022908 5905 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Cux1P53564 Ank2-217ENSMUST00000182610 2231 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
Cux1P53564 Lancl3-201ENSMUST00000069763 3991 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Cux1P53564 Setdb2-201ENSMUST00000095775 3034 ntAPPRIS ALT2 TSL 5 BASIC18.9■□□□□ 0.62
Cux1P53564 Gm13916-201ENSMUST00000117368 628 ntBASIC18.9■□□□□ 0.62
Cux1P53564 Gm13605-201ENSMUST00000124489 658 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
Cux1P53564 Gm5706-201ENSMUST00000181525 993 ntBASIC18.9■□□□□ 0.62
Cux1P53564 Mir6998-201ENSMUST00000183343 64 ntBASIC18.9■□□□□ 0.62
Cux1P53564 Gm44158-201ENSMUST00000203881 505 ntBASIC18.9■□□□□ 0.62
Cux1P53564 Lrrc8d-201ENSMUST00000060531 3923 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
Cux1P53564 Fbxo34-203ENSMUST00000163324 3132 ntAPPRIS ALT2 TSL 2 BASIC18.89■□□□□ 0.62
Cux1P53564 Gm9866-202ENSMUST00000182473 1882 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
Cux1P53564 Inpp4a-209ENSMUST00000140264 3676 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
Cux1P53564 Gm2420-201ENSMUST00000119864 2149 ntBASIC18.89■□□□□ 0.61
Cux1P53564 Clcnkb-201ENSMUST00000006378 2370 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Cux1P53564 Scyl3-207ENSMUST00000170359 4288 ntAPPRIS ALT2 TSL 5 BASIC18.89■□□□□ 0.61
Cux1P53564 Kif21a-203ENSMUST00000100304 6439 ntAPPRIS ALT2 TSL 5 BASIC18.89■□□□□ 0.61
Cux1P53564 Kif21a-202ENSMUST00000088614 6439 ntAPPRIS ALT2 TSL 5 BASIC18.89■□□□□ 0.61
Cux1P53564 Adamts17-201ENSMUST00000098382 6025 ntAPPRIS P2 TSL 5 BASIC18.89■□□□□ 0.61
Cux1P53564 Gtf3c4-204ENSMUST00000171404 7127 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
Cux1P53564 Atxn10-201ENSMUST00000163242 2425 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Cux1P53564 Gpsm2-201ENSMUST00000029482 3498 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Cux1P53564 9930021J03Rik-204ENSMUST00000177155 6632 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.61
Cux1P53564 Serf2-202ENSMUST00000110615 876 ntTSL 2 BASIC18.89■□□□□ 0.61
Retrieved 100 of 76,532 protein–RNA pairs in 48.7 ms