Protein–RNA interactions for Protein: P39428

Traf1, TNF receptor-associated factor 1, mousemouse

Predictions only

Length 409 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Traf1P39428 Rpl29-201ENSMUST00000059802 710 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Traf1P39428 Olfr157-202ENSMUST00000215442 1766 ntAPPRIS P1 BASIC14.51□□□□□ -0.09
Traf1P39428 Slc6a13-201ENSMUST00000064580 2234 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Traf1P39428 Slc16a2-201ENSMUST00000042664 4152 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Traf1P39428 Dbn1-201ENSMUST00000021950 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
Traf1P39428 Sh3bp2-202ENSMUST00000101316 3031 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
Traf1P39428 Sacs-202ENSMUST00000119509 3468 ntAPPRIS ALT2 TSL 5 BASIC14.51□□□□□ -0.09
Traf1P39428 Tsku-203ENSMUST00000165257 2514 ntAPPRIS P1 TSL 2 BASIC14.51□□□□□ -0.09
Traf1P39428 Gm17435-202ENSMUST00000212699 1998 ntBASIC14.51□□□□□ -0.09
Traf1P39428 Acin1-202ENSMUST00000022794 2365 ntAPPRIS ALT2 TSL 5 BASIC14.51□□□□□ -0.09
Traf1P39428 Zfp142-203ENSMUST00000113737 7473 ntAPPRIS P3 TSL 1 (best) BASIC14.51□□□□□ -0.09
Traf1P39428 Tnrc6c-201ENSMUST00000026658 8724 ntAPPRIS P1 TSL 5 BASIC14.51□□□□□ -0.09
Traf1P39428 Trp53i11-202ENSMUST00000111266 2703 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Traf1P39428 Cd300lf-202ENSMUST00000106561 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC14.5□□□□□ -0.09
Traf1P39428 H2-Ob-202ENSMUST00000167280 1878 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
Traf1P39428 Stpg3-201ENSMUST00000043774 1430 ntAPPRIS P2 TSL 1 (best) BASIC14.5□□□□□ -0.09
Traf1P39428 Gm43823-201ENSMUST00000197391 1808 ntBASIC14.5□□□□□ -0.09
Traf1P39428 Capn5-202ENSMUST00000107112 2232 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Traf1P39428 Gm996-204ENSMUST00000191602 4812 ntAPPRIS P1 TSL 2 BASIC14.5□□□□□ -0.09
Traf1P39428 Set-202ENSMUST00000102866 2824 ntAPPRIS P3 TSL 1 (best) BASIC14.5□□□□□ -0.09
Traf1P39428 Crhr2-208ENSMUST00000212633 2041 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
Traf1P39428 Spock1-206ENSMUST00000189373 3128 ntTSL 5 BASIC14.5□□□□□ -0.09
Traf1P39428 Gm38385-201ENSMUST00000194454 2351 ntBASIC14.5□□□□□ -0.09
Traf1P39428 Dctn6-203ENSMUST00000118811 934 ntTSL 3 BASIC14.5□□□□□ -0.09
Traf1P39428 Gm14999-201ENSMUST00000121039 624 ntBASIC14.5□□□□□ -0.09
Traf1P39428 Gm13570-201ENSMUST00000140763 309 ntBASIC14.5□□□□□ -0.09
Traf1P39428 Gm20498-202ENSMUST00000164386 1043 ntTSL 2 BASIC14.5□□□□□ -0.09
Traf1P39428 Hsbp1l1-201ENSMUST00000166219 1251 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Traf1P39428 Cox16-204ENSMUST00000166723 579 ntTSL 2 BASIC14.5□□□□□ -0.09
Traf1P39428 Hectd2-208ENSMUST00000169036 3842 ntAPPRIS ALT1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Traf1P39428 Gm27246-201ENSMUST00000183611 1240 ntTSL 5 BASIC14.5□□□□□ -0.09
Traf1P39428 AA914427-201ENSMUST00000193194 1166 ntBASIC14.5□□□□□ -0.09
Traf1P39428 Fxyd1-217ENSMUST00000206860 594 ntAPPRIS P1 TSL 5 BASIC14.5□□□□□ -0.09
Traf1P39428 Tm2d2-202ENSMUST00000210536 727 ntTSL 3 BASIC14.5□□□□□ -0.09
Traf1P39428 Mt2-202ENSMUST00000212806 388 ntTSL 2 BASIC14.5□□□□□ -0.09
Traf1P39428 Gm8712-201ENSMUST00000221090 701 ntBASIC14.5□□□□□ -0.09
Traf1P39428 AC154222.2-201ENSMUST00000225848 607 ntBASIC14.5□□□□□ -0.09
Traf1P39428 CT030182.1-201ENSMUST00000225935 533 ntBASIC14.5□□□□□ -0.09
Traf1P39428 Odf4-201ENSMUST00000038932 1078 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Traf1P39428 BC049730-201ENSMUST00000051714 1172 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Traf1P39428 Gm10312-201ENSMUST00000078515 489 ntBASIC14.5□□□□□ -0.09
Traf1P39428 Vmn1r217-201ENSMUST00000091721 897 ntAPPRIS P1 BASIC14.5□□□□□ -0.09
Traf1P39428 Prrxl1-201ENSMUST00000068938 1610 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
Traf1P39428 AC123857.2-201ENSMUST00000225756 1582 ntBASIC14.5□□□□□ -0.09
Traf1P39428 Ttc25-202ENSMUST00000092684 2240 ntAPPRIS P2 TSL 1 (best) BASIC14.5□□□□□ -0.09
Traf1P39428 Dennd4b-201ENSMUST00000098914 5423 ntAPPRIS P2 TSL 1 (best) BASIC14.5□□□□□ -0.09
Traf1P39428 Slc26a5-201ENSMUST00000030878 2962 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Traf1P39428 Klhl26-201ENSMUST00000066597 2991 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Traf1P39428 Qrfp-201ENSMUST00000057407 2927 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Traf1P39428 Ccr7-201ENSMUST00000103134 1978 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Traf1P39428 Tkfc-201ENSMUST00000037678 2253 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Traf1P39428 Ikzf1-204ENSMUST00000076700 5163 ntAPPRIS P2 TSL 1 (best) BASIC14.49□□□□□ -0.09
Traf1P39428 Akt1-205ENSMUST00000128300 1342 ntTSL 5 BASIC14.49□□□□□ -0.09
Traf1P39428 Usp33-209ENSMUST00000197748 4183 ntAPPRIS P3 TSL 1 (best) BASIC14.49□□□□□ -0.09
Traf1P39428 Lrrc8e-201ENSMUST00000053035 3878 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Traf1P39428 Vps29-208ENSMUST00000155671 2716 ntAPPRIS P3 TSL 1 (best) BASIC14.49□□□□□ -0.09
Traf1P39428 Magi1-206ENSMUST00000203688 4969 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
Traf1P39428 Cdc26-202ENSMUST00000107459 654 ntAPPRIS P1 TSL 2 BASIC14.49□□□□□ -0.09
Traf1P39428 Cryba4-203ENSMUST00000112385 808 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Traf1P39428 Tmsb10-201ENSMUST00000114048 623 ntAPPRIS P1 TSL 3 BASIC14.49□□□□□ -0.09
Traf1P39428 Gm5638-201ENSMUST00000118618 1258 ntBASIC14.49□□□□□ -0.09
Traf1P39428 Gm10863-201ENSMUST00000130745 438 ntTSL 3 BASIC14.49□□□□□ -0.09
Traf1P39428 Msrb3-202ENSMUST00000130950 561 ntTSL 3 BASIC14.49□□□□□ -0.09
Traf1P39428 Gm42863-201ENSMUST00000197875 2958 ntBASIC14.49□□□□□ -0.09
Traf1P39428 Gm35082-202ENSMUST00000208164 525 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
Traf1P39428 Gm32468-201ENSMUST00000214199 1040 ntTSL 5 BASIC14.49□□□□□ -0.09
Traf1P39428 Dhrs2-201ENSMUST00000022820 1268 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Traf1P39428 H2-Oa-201ENSMUST00000025192 1088 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Traf1P39428 Pphln1-202ENSMUST00000068457 3816 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
Traf1P39428 Gm10076-201ENSMUST00000073238 384 ntBASIC14.49□□□□□ -0.09
Traf1P39428 Arcn1-201ENSMUST00000034607 4072 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Traf1P39428 Map4k2-201ENSMUST00000025897 4644 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Traf1P39428 Pglyrp2-202ENSMUST00000170392 2068 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Traf1P39428 2810429I04Rik-203ENSMUST00000181708 4769 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
Traf1P39428 Ncln-201ENSMUST00000020463 3118 ntAPPRIS P2 TSL 1 (best) BASIC14.49□□□□□ -0.09
Traf1P39428 Evi5l-203ENSMUST00000176149 3938 ntAPPRIS ALT2 TSL 5 BASIC14.49□□□□□ -0.09
Traf1P39428 Gm4864-201ENSMUST00000219894 1461 ntBASIC14.49□□□□□ -0.09
Traf1P39428 4930458D05Rik-201ENSMUST00000142871 3055 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
Traf1P39428 Banp-201ENSMUST00000026354 1970 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
Traf1P39428 Ctps2-206ENSMUST00000112303 3289 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Traf1P39428 Zfp248-205ENSMUST00000161519 2243 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
Traf1P39428 Gm15326-202ENSMUST00000128198 1422 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
Traf1P39428 Ccdc81-201ENSMUST00000041195 2439 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Traf1P39428 Sh3bp4-201ENSMUST00000066279 4995 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Traf1P39428 Lrpprc-201ENSMUST00000112308 4393 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Traf1P39428 Gm20554-201ENSMUST00000177421 2352 ntBASIC14.48□□□□□ -0.09
Traf1P39428 Muc6-202ENSMUST00000189314 5087 ntAPPRIS ALT2 TSL 1 (best) BASIC14.48□□□□□ -0.09
Traf1P39428 Copb2-201ENSMUST00000035033 3050 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Traf1P39428 Mest-211ENSMUST00000163949 2561 ntAPPRIS P3 TSL 1 (best) BASIC14.48□□□□□ -0.09
Traf1P39428 Synj2-202ENSMUST00000080283 4793 ntAPPRIS ALT2 TSL 1 (best) BASIC14.48□□□□□ -0.09
Traf1P39428 Prss43-201ENSMUST00000077549 2327 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Traf1P39428 Rnf17-202ENSMUST00000223627 2077 ntBASIC14.48□□□□□ -0.09
Traf1P39428 Washc5-201ENSMUST00000022976 4033 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Traf1P39428 Kcnt1-211ENSMUST00000171268 3771 ntAPPRIS ALT2 TSL 1 (best) BASIC14.48□□□□□ -0.09
Traf1P39428 Flcn-202ENSMUST00000091246 2768 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Traf1P39428 Chrna10-201ENSMUST00000084830 2513 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Traf1P39428 Zc3h6-202ENSMUST00000110320 4916 ntAPPRIS P1 TSL 2 BASIC14.48□□□□□ -0.09
Traf1P39428 Iws1-201ENSMUST00000025243 9613 ntAPPRIS P2 TSL 1 (best) BASIC14.48□□□□□ -0.09
Traf1P39428 Abo-201ENSMUST00000102900 1779 ntAPPRIS P2 TSL 1 (best) BASIC14.48□□□□□ -0.09
Traf1P39428 Gm9951-202ENSMUST00000149618 1772 ntTSL 2 BASIC14.48□□□□□ -0.09
Retrieved 100 of 76,532 protein–RNA pairs in 51.8 ms