Protein–RNA interactions for Protein: P18111

Cdx1, Homeobox protein CDX-1, mousemouse

Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx1P18111 Sumo2-204ENSMUST00000118155 884 ntTSL 2 BASIC10.15□□□□□ -0.78
Cdx1P18111 Gm12341-201ENSMUST00000119724 503 ntBASIC10.15□□□□□ -0.78
Cdx1P18111 Gm12960-201ENSMUST00000120017 1066 ntBASIC10.15□□□□□ -0.78
Cdx1P18111 Gm14617-202ENSMUST00000144208 607 ntTSL 3 BASIC10.15□□□□□ -0.78
Cdx1P18111 Zfp414-204ENSMUST00000166627 1211 ntAPPRIS ALT2 TSL 1 (best) BASIC10.15□□□□□ -0.78
Cdx1P18111 Commd6-203ENSMUST00000168587 519 ntAPPRIS ALT2 TSL 1 (best) BASIC10.15□□□□□ -0.78
Cdx1P18111 Pfdn6-205ENSMUST00000174426 396 ntTSL 2 BASIC10.15□□□□□ -0.78
Cdx1P18111 Otx2os1-202ENSMUST00000183803 743 ntTSL 1 (best) BASIC10.15□□□□□ -0.78
Cdx1P18111 Gm28911-201ENSMUST00000188837 117 ntBASIC10.15□□□□□ -0.78
Cdx1P18111 Ube2f-210ENSMUST00000191368 1110 ntAPPRIS P1 TSL 1 (best) BASIC10.15□□□□□ -0.78
Cdx1P18111 Gm6266-201ENSMUST00000203844 806 ntBASIC10.15□□□□□ -0.78
Cdx1P18111 Trib2-204ENSMUST00000221518 1192 ntTSL 5 BASIC10.15□□□□□ -0.78
Cdx1P18111 Gstm1-201ENSMUST00000004140 1289 ntAPPRIS P1 TSL 1 (best) BASIC10.15□□□□□ -0.78
Cdx1P18111 Zfp414-201ENSMUST00000073570 1197 ntAPPRIS P2 TSL 1 (best) BASIC10.15□□□□□ -0.78
Cdx1P18111 Gm36864-203ENSMUST00000223070 1513 ntAPPRIS P5 TSL 5 BASIC10.15□□□□□ -0.78
Cdx1P18111 Hmgcs2-202ENSMUST00000120541 2524 ntAPPRIS P1 TSL 1 (best) BASIC10.15□□□□□ -0.78
Cdx1P18111 Vmp1-201ENSMUST00000018315 2787 ntAPPRIS P1 TSL 1 (best) BASIC10.15□□□□□ -0.78
Cdx1P18111 Zmynd8-203ENSMUST00000099084 5232 ntAPPRIS ALT2 TSL 5 BASIC10.15□□□□□ -0.78
Cdx1P18111 Mfsd4b5-202ENSMUST00000073618 2978 ntTSL 1 (best) BASIC10.15□□□□□ -0.78
Cdx1P18111 Sass6-204ENSMUST00000197335 2458 ntTSL 1 (best) BASIC10.15□□□□□ -0.78
Cdx1P18111 Rbmx2-201ENSMUST00000033433 1747 ntAPPRIS P1 TSL 1 (best) BASIC10.15□□□□□ -0.78
Cdx1P18111 P2rx7-203ENSMUST00000100737 4936 ntAPPRIS P1 TSL 1 (best) BASIC10.15□□□□□ -0.78
Cdx1P18111 Bdh1-202ENSMUST00000115226 1496 ntAPPRIS P1 TSL 1 (best) BASIC10.15□□□□□ -0.78
Cdx1P18111 Ppargc1b-202ENSMUST00000075299 3656 ntAPPRIS P2 TSL 1 (best) BASIC10.15□□□□□ -0.78
Cdx1P18111 Ptp4a1-201ENSMUST00000027232 4145 ntAPPRIS P1 TSL 1 (best) BASIC10.15□□□□□ -0.78
Cdx1P18111 Hnrnph2-203ENSMUST00000074950 2426 ntAPPRIS P1 TSL 1 (best) BASIC10.15□□□□□ -0.79
Cdx1P18111 Adamts16-202ENSMUST00000109694 3378 ntTSL 1 (best) BASIC10.15□□□□□ -0.79
Cdx1P18111 Rnf123-218ENSMUST00000178267 4309 ntAPPRIS P3 TSL 5 BASIC10.15□□□□□ -0.79
Cdx1P18111 Gm9195-201ENSMUST00000208955 8870 ntAPPRIS P1 TSL 5 BASIC10.15□□□□□ -0.79
Cdx1P18111 Gm13589-201ENSMUST00000146404 1675 ntTSL 1 (best) BASIC10.15□□□□□ -0.79
Cdx1P18111 Gm13883-201ENSMUST00000150450 1404 ntTSL 1 (best) BASIC10.15□□□□□ -0.79
Cdx1P18111 Nom1-201ENSMUST00000001611 9219 ntAPPRIS P1 TSL 1 (best) BASIC10.15□□□□□ -0.79
Cdx1P18111 Brf2-201ENSMUST00000033877 1899 ntAPPRIS P1 TSL 1 (best) BASIC10.15□□□□□ -0.79
Cdx1P18111 Tmx3-201ENSMUST00000025515 4611 ntAPPRIS P1 TSL 1 (best) BASIC10.14□□□□□ -0.79
Cdx1P18111 Gnb4-205ENSMUST00000155737 5997 ntAPPRIS P1 TSL 1 (best) BASIC10.14□□□□□ -0.79
Cdx1P18111 Tmbim1-202ENSMUST00000113796 11011 ntAPPRIS P1 TSL 1 (best) BASIC10.14□□□□□ -0.79
Cdx1P18111 Trim15-201ENSMUST00000025329 1843 ntAPPRIS P3 TSL 1 (best) BASIC10.14□□□□□ -0.79
Cdx1P18111 Ckm-203ENSMUST00000208710 2742 ntAPPRIS P1 TSL 1 (best) BASIC10.14□□□□□ -0.79
Cdx1P18111 Stra6-202ENSMUST00000085677 2725 ntAPPRIS P1 TSL 1 (best) BASIC10.14□□□□□ -0.79
Cdx1P18111 Abhd18-202ENSMUST00000108078 2492 ntAPPRIS P1 TSL 1 (best) BASIC10.14□□□□□ -0.79
Cdx1P18111 Osgin1-206ENSMUST00000152420 2005 ntAPPRIS P1 TSL 1 (best) BASIC10.14□□□□□ -0.79
Cdx1P18111 AC154517.2-201ENSMUST00000220829 2458 ntBASIC10.14□□□□□ -0.79
Cdx1P18111 Fut8-201ENSMUST00000062804 3358 ntAPPRIS P1 TSL 1 (best) BASIC10.14□□□□□ -0.79
Cdx1P18111 Cln3-203ENSMUST00000098036 1571 ntAPPRIS ALT2 TSL 1 (best) BASIC10.14□□□□□ -0.79
Cdx1P18111 C230024C17Rik-201ENSMUST00000190663 3337 ntTSL 1 (best) BASIC10.14□□□□□ -0.79
Cdx1P18111 Rimbp2-204ENSMUST00000198941 6446 ntAPPRIS P3 TSL 2 BASIC10.14□□□□□ -0.79
Cdx1P18111 Tcf4-249ENSMUST00000202435 2427 ntTSL 5 BASIC10.14□□□□□ -0.79
Cdx1P18111 Kcnab2-201ENSMUST00000030768 3533 ntAPPRIS ALT1 TSL 1 (best) BASIC10.14□□□□□ -0.79
Cdx1P18111 Gm20427-201ENSMUST00000168978 3703 ntTSL 2 BASIC10.14□□□□□ -0.79
Cdx1P18111 Mtr-201ENSMUST00000099856 8294 ntAPPRIS P1 TSL 1 (best) BASIC10.14□□□□□ -0.79
Cdx1P18111 Ccne2-201ENSMUST00000029866 3006 ntAPPRIS ALT1 TSL 1 (best) BASIC10.14□□□□□ -0.79
Cdx1P18111 Alox12-201ENSMUST00000000329 3001 ntAPPRIS P1 TSL 1 (best) BASIC10.14□□□□□ -0.79
Cdx1P18111 Col14a1-202ENSMUST00000110217 6457 ntAPPRIS ALT1 TSL 5 BASIC10.14□□□□□ -0.79
Cdx1P18111 Gm10392-201ENSMUST00000100807 1732 ntAPPRIS P1 TSL 2 BASIC10.14□□□□□ -0.79
Cdx1P18111 Otub2-202ENSMUST00000101094 3228 ntTSL 1 (best) BASIC10.14□□□□□ -0.79
Cdx1P18111 Thsd4-202ENSMUST00000098660 8796 ntAPPRIS P1 TSL 1 (best) BASIC10.14□□□□□ -0.79
Cdx1P18111 Gm6210-201ENSMUST00000204734 1942 ntBASIC10.14□□□□□ -0.79
Cdx1P18111 Spg11-201ENSMUST00000036450 7671 ntAPPRIS P1 TSL 1 (best) BASIC10.14□□□□□ -0.79
Cdx1P18111 Uqcrq-203ENSMUST00000109021 405 ntAPPRIS P1 TSL 1 (best) BASIC10.14□□□□□ -0.79
Cdx1P18111 Defb30-203ENSMUST00000111208 503 ntAPPRIS ALT2 TSL 1 (best) BASIC10.14□□□□□ -0.79
Cdx1P18111 Defb30-204ENSMUST00000111209 721 ntAPPRIS ALT2 TSL 1 (best) BASIC10.14□□□□□ -0.79
Cdx1P18111 Apobec1-201ENSMUST00000112585 2127 ntAPPRIS P1 TSL 1 (best) BASIC10.14□□□□□ -0.79
Cdx1P18111 Mrps10-202ENSMUST00000119841 1113 ntTSL 1 (best) BASIC10.14□□□□□ -0.79
Cdx1P18111 Dusp13-203ENSMUST00000120956 1070 ntTSL 1 (best) BASIC10.14□□□□□ -0.79
Cdx1P18111 Rapgef3os2-201ENSMUST00000124374 920 ntTSL 1 (best) BASIC10.14□□□□□ -0.79
Cdx1P18111 2210408F21Rik-214ENSMUST00000155345 1022 ntTSL 1 (best) BASIC10.14□□□□□ -0.79
Cdx1P18111 Ercc1-203ENSMUST00000160369 1175 ntTSL 1 (best) BASIC10.14□□□□□ -0.79
Cdx1P18111 Gm17232-201ENSMUST00000164515 453 ntTSL 2 BASIC10.14□□□□□ -0.79
Cdx1P18111 Gm17409-201ENSMUST00000167423 962 ntAPPRIS P1 BASIC10.14□□□□□ -0.79
Cdx1P18111 Ube2i-211ENSMUST00000173713 890 ntAPPRIS P1 TSL 1 (best) BASIC10.14□□□□□ -0.79
Cdx1P18111 Rab10os-207ENSMUST00000179924 823 ntTSL 5 BASIC10.14□□□□□ -0.79
Cdx1P18111 A330069E16Rik-201ENSMUST00000181191 887 ntTSL 1 (best) BASIC10.14□□□□□ -0.79
Cdx1P18111 Gm11214-201ENSMUST00000184252 552 ntAPPRIS P1 BASIC10.14□□□□□ -0.79
Cdx1P18111 Spag7-201ENSMUST00000018431 1159 ntAPPRIS P1 TSL 1 (best) BASIC10.14□□□□□ -0.79
Cdx1P18111 Gm7558-201ENSMUST00000193221 1165 ntBASIC10.14□□□□□ -0.79
Cdx1P18111 Tcta-203ENSMUST00000195615 597 ntTSL 5 BASIC10.14□□□□□ -0.79
Cdx1P18111 Gm5279-201ENSMUST00000199575 745 ntBASIC10.14□□□□□ -0.79
Cdx1P18111 Efcab10-201ENSMUST00000020878 673 ntAPPRIS P1 TSL 1 (best) BASIC10.14□□□□□ -0.79
Cdx1P18111 AC147241.1-201ENSMUST00000222173 785 ntTSL 3 BASIC10.14□□□□□ -0.79
Cdx1P18111 Oxt-201ENSMUST00000028764 537 ntAPPRIS P1 TSL 1 (best) BASIC10.14□□□□□ -0.79
Cdx1P18111 Coq8a-201ENSMUST00000027766 4026 ntAPPRIS P1 TSL 1 (best) BASIC10.14□□□□□ -0.79
Cdx1P18111 Spata2-201ENSMUST00000057627 4012 ntAPPRIS P1 TSL 1 (best) BASIC10.14□□□□□ -0.79
Cdx1P18111 Rcor3-202ENSMUST00000110849 3791 ntTSL 1 (best) BASIC10.14□□□□□ -0.79
Cdx1P18111 Gm5053-201ENSMUST00000208361 1678 ntBASIC10.14□□□□□ -0.79
Cdx1P18111 Zfp354c-201ENSMUST00000000632 1683 ntAPPRIS P1 TSL 1 (best) BASIC10.14□□□□□ -0.79
Cdx1P18111 Abca3-201ENSMUST00000039013 6476 ntAPPRIS P2 TSL 1 (best) BASIC10.14□□□□□ -0.79
Cdx1P18111 9230105E05Rik-201ENSMUST00000161291 2250 ntTSL 1 (best) BASIC10.14□□□□□ -0.79
Cdx1P18111 Hcn1-201ENSMUST00000006991 14141 ntAPPRIS P1 TSL 1 (best) BASIC10.14□□□□□ -0.79
Cdx1P18111 Polr2c-202ENSMUST00000211939 3881 ntTSL 2 BASIC10.14□□□□□ -0.79
Cdx1P18111 Gm16741-201ENSMUST00000145085 1818 ntTSL 1 (best) BASIC10.14□□□□□ -0.79
Cdx1P18111 Chrna9-201ENSMUST00000031108 1843 ntAPPRIS P1 TSL 1 (best) BASIC10.14□□□□□ -0.79
Cdx1P18111 Gjb2-201ENSMUST00000055698 2406 ntAPPRIS P1 TSL 1 (best) BASIC10.14□□□□□ -0.79
Cdx1P18111 Gm26905-201ENSMUST00000180798 6621 ntTSL 5 BASIC10.14□□□□□ -0.79
Cdx1P18111 Mzf1-201ENSMUST00000069289 3597 ntTSL 1 (best) BASIC10.14□□□□□ -0.79
Cdx1P18111 Ap1b1-203ENSMUST00000109897 3942 ntTSL 5 BASIC10.14□□□□□ -0.79
Cdx1P18111 Arhgap30-201ENSMUST00000056449 4494 ntAPPRIS P1 TSL 1 (best) BASIC10.13□□□□□ -0.79
Cdx1P18111 Lgals3bp-201ENSMUST00000043722 2330 ntAPPRIS P1 TSL 1 (best) BASIC10.13□□□□□ -0.79
Cdx1P18111 Gm14866-201ENSMUST00000149206 2118 ntTSL 2 BASIC10.13□□□□□ -0.79
Cdx1P18111 Ppil2-203ENSMUST00000115721 3088 ntAPPRIS P1 TSL 1 (best) BASIC10.13□□□□□ -0.79
Cdx1P18111 Rapgef2-202ENSMUST00000118340 6544 ntTSL 1 (best) BASIC10.13□□□□□ -0.79
Retrieved 100 of 76,532 protein–RNA pairs in 43.2 ms