Protein–RNA interactions for Protein: P11416

Rara, Retinoic acid receptor alpha, mousemouse

Predictions only

Length 462 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RaraP11416 BC052040-203ENSMUST00000166472 2770 ntTSL 1 (best) BASIC13.52□□□□□ -0.24
RaraP11416 Otop1-202ENSMUST00000114099 3141 ntAPPRIS P5 TSL 5 BASIC13.52□□□□□ -0.24
RaraP11416 Ppfia4-201ENSMUST00000168515 6067 ntAPPRIS P2 TSL 1 (best) BASIC13.52□□□□□ -0.25
RaraP11416 Blvrb-202ENSMUST00000108357 782 ntTSL 2 BASIC13.52□□□□□ -0.25
RaraP11416 Rgs19-204ENSMUST00000108772 779 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
RaraP11416 Alkbh2-202ENSMUST00000112279 899 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
RaraP11416 Gm12490-201ENSMUST00000120255 560 ntBASIC13.52□□□□□ -0.25
RaraP11416 Rpsa-ps9-201ENSMUST00000120702 885 ntBASIC13.52□□□□□ -0.25
RaraP11416 Gm11964-201ENSMUST00000120982 444 ntBASIC13.52□□□□□ -0.25
RaraP11416 Gm11592-201ENSMUST00000133160 637 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
RaraP11416 Cabp2-201ENSMUST00000159148 1030 ntAPPRIS ALT2 TSL 1 (best) BASIC13.52□□□□□ -0.25
RaraP11416 1700015O11Rik-201ENSMUST00000180964 678 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
RaraP11416 Gm9022-201ENSMUST00000182482 992 ntBASIC13.52□□□□□ -0.25
RaraP11416 Zfp709-202ENSMUST00000188374 717 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
RaraP11416 Gm42442-201ENSMUST00000197951 1133 ntBASIC13.52□□□□□ -0.25
RaraP11416 Vmo1-201ENSMUST00000021179 672 ntAPPRIS P1 TSL 2 BASIC13.52□□□□□ -0.25
RaraP11416 Gm5035-201ENSMUST00000215581 927 ntBASIC13.52□□□□□ -0.25
RaraP11416 CT009738.1-201ENSMUST00000219031 809 ntBASIC13.52□□□□□ -0.25
RaraP11416 Gm8227-201ENSMUST00000223306 571 ntBASIC13.52□□□□□ -0.25
RaraP11416 AC069562.3-201ENSMUST00000225387 587 ntBASIC13.52□□□□□ -0.25
RaraP11416 Gm10131-201ENSMUST00000080152 736 ntAPPRIS P1 BASIC13.52□□□□□ -0.25
RaraP11416 Dusp13-202ENSMUST00000119866 1342 ntTSL 5 BASIC13.52□□□□□ -0.25
RaraP11416 Dnmt3aos-201ENSMUST00000144896 1385 ntTSL 2 BASIC13.52□□□□□ -0.25
RaraP11416 Hsd17b6-201ENSMUST00000026462 1392 ntAPPRIS P1 TSL 5 BASIC13.52□□□□□ -0.25
RaraP11416 Acly-203ENSMUST00000107389 4426 ntAPPRIS ALT1 TSL 1 (best) BASIC13.52□□□□□ -0.25
RaraP11416 Rgs6-209ENSMUST00000186848 1472 ntTSL 5 BASIC13.52□□□□□ -0.25
RaraP11416 Zfp369-203ENSMUST00000130799 1580 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
RaraP11416 Gm13293-201ENSMUST00000131188 1615 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
RaraP11416 4933440M02Rik-203ENSMUST00000206609 1747 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
RaraP11416 Dab2ip-205ENSMUST00000112986 5580 ntAPPRIS ALT2 TSL 5 BASIC13.52□□□□□ -0.25
RaraP11416 Bdp1-201ENSMUST00000038104 9921 ntAPPRIS P2 TSL 5 BASIC13.52□□□□□ -0.25
RaraP11416 Gm8228-201ENSMUST00000189949 2192 ntBASIC13.52□□□□□ -0.25
RaraP11416 Hnf1b-202ENSMUST00000108113 2376 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
RaraP11416 Tspan14-201ENSMUST00000047652 2475 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
RaraP11416 Btnl2-202ENSMUST00000178562 2563 ntAPPRIS ALT2 TSL 5 BASIC13.52□□□□□ -0.25
RaraP11416 Btnl2-201ENSMUST00000025198 2564 ntAPPRIS P2 TSL 1 (best) BASIC13.52□□□□□ -0.25
RaraP11416 Anapc7-202ENSMUST00000119792 3599 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
RaraP11416 Galc-201ENSMUST00000021390 3832 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
RaraP11416 Rabep1-203ENSMUST00000100928 3860 ntTSL 5 BASIC13.52□□□□□ -0.25
RaraP11416 Cacnb2-203ENSMUST00000114723 3945 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
RaraP11416 Pdlim5-201ENSMUST00000029941 5016 ntAPPRIS P3 TSL 1 (best) BASIC13.52□□□□□ -0.25
RaraP11416 Mapt-204ENSMUST00000106992 5253 ntAPPRIS ALT2 TSL 1 (best) BASIC13.51□□□□□ -0.25
RaraP11416 Gatad2a-201ENSMUST00000065169 3812 ntAPPRIS P3 TSL 1 (best) BASIC13.51□□□□□ -0.25
RaraP11416 Ebf3-203ENSMUST00000168203 3724 ntAPPRIS ALT1 TSL 1 (best) BASIC13.51□□□□□ -0.25
RaraP11416 Slc25a13-203ENSMUST00000188414 3121 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
RaraP11416 Rasgef1a-202ENSMUST00000203482 2227 ntAPPRIS P3 TSL 1 (best) BASIC13.51□□□□□ -0.25
RaraP11416 Serpinf2-202ENSMUST00000108437 2179 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
RaraP11416 Mroh5-202ENSMUST00000110021 2145 ntAPPRIS ALT2 TSL 1 (best) BASIC13.51□□□□□ -0.25
RaraP11416 Ttc23-202ENSMUST00000107470 1915 ntAPPRIS ALT2 TSL 5 BASIC13.51□□□□□ -0.25
RaraP11416 Them4-201ENSMUST00000049822 1781 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
RaraP11416 Adcyap1r1-203ENSMUST00000165786 1745 ntAPPRIS ALT2 TSL 5 BASIC13.51□□□□□ -0.25
RaraP11416 Sgce-201ENSMUST00000004750 1703 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
RaraP11416 Phyhd1-212ENSMUST00000154647 1678 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
RaraP11416 Acnat2-201ENSMUST00000081541 1664 ntAPPRIS P2 TSL 1 (best) BASIC13.51□□□□□ -0.25
RaraP11416 Chil1-201ENSMUST00000082060 1687 ntAPPRIS P2 TSL 1 (best) BASIC13.51□□□□□ -0.25
RaraP11416 Smpd2-201ENSMUST00000019965 1602 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
RaraP11416 4933417O13Rik-202ENSMUST00000208893 1571 ntTSL 5 BASIC13.51□□□□□ -0.25
RaraP11416 Tmem80-204ENSMUST00000128906 1387 ntTSL 2 BASIC13.51□□□□□ -0.25
RaraP11416 Rin3-201ENSMUST00000056950 3892 ntAPPRIS P3 TSL 1 (best) BASIC13.51□□□□□ -0.25
RaraP11416 D930015M05Rik-201ENSMUST00000126002 1190 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
RaraP11416 Gm11751-201ENSMUST00000126187 460 ntTSL 3 BASIC13.51□□□□□ -0.25
RaraP11416 C87198-201ENSMUST00000173553 1045 ntTSL 3 BASIC13.51□□□□□ -0.25
RaraP11416 Gm27839-201ENSMUST00000184242 106 ntBASIC13.51□□□□□ -0.25
RaraP11416 Letm2-213ENSMUST00000211422 738 ntTSL 5 BASIC13.51□□□□□ -0.25
RaraP11416 Ier3-201ENSMUST00000003635 1131 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
RaraP11416 Mzf1-205ENSMUST00000182515 3340 ntAPPRIS P2 TSL 1 (best) BASIC13.51□□□□□ -0.25
RaraP11416 Mdga1-201ENSMUST00000073556 7566 ntAPPRIS P2 TSL 5 BASIC13.51□□□□□ -0.25
RaraP11416 Nrxn1-207ENSMUST00000160844 9309 ntAPPRIS P2 TSL 1 (best) BASIC13.51□□□□□ -0.25
RaraP11416 Usp20-211ENSMUST00000170476 4970 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
RaraP11416 Hps1-209ENSMUST00000162061 2608 ntAPPRIS ALT2 TSL 1 (best) BASIC13.51□□□□□ -0.25
RaraP11416 Axl-202ENSMUST00000085948 3899 ntAPPRIS ALT2 TSL 1 (best) BASIC13.51□□□□□ -0.25
RaraP11416 Lcor-201ENSMUST00000067795 4810 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
RaraP11416 Fam118b-203ENSMUST00000121564 1962 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
RaraP11416 H3f3b-201ENSMUST00000016703 1993 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
RaraP11416 Pla2g4f-201ENSMUST00000054651 3116 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
RaraP11416 Samd4-202ENSMUST00000100672 4165 ntAPPRIS ALT2 TSL 1 (best) BASIC13.5□□□□□ -0.25
RaraP11416 Grm7-202ENSMUST00000172951 4197 ntAPPRIS P3 TSL 1 (best) BASIC13.5□□□□□ -0.25
RaraP11416 AU022754-201ENSMUST00000180441 2976 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
RaraP11416 Fnbp1-202ENSMUST00000075326 1761 ntTSL 5 BASIC13.5□□□□□ -0.25
RaraP11416 Rab11fip5-201ENSMUST00000060837 4035 ntAPPRIS P3 TSL 1 (best) BASIC13.5□□□□□ -0.25
RaraP11416 Gm26878-201ENSMUST00000181778 1644 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
RaraP11416 Epha5-202ENSMUST00000113398 4830 ntTSL 5 BASIC13.5□□□□□ -0.25
RaraP11416 Psap-201ENSMUST00000004316 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC13.5□□□□□ -0.25
RaraP11416 Lrrc18-204ENSMUST00000120951 1511 ntAPPRIS ALT2 TSL 5 BASIC13.5□□□□□ -0.25
RaraP11416 AC160405.1-201ENSMUST00000218207 1545 ntBASIC13.5□□□□□ -0.25
RaraP11416 Chpf2-201ENSMUST00000088295 5371 ntAPPRIS P1 TSL 2 BASIC13.5□□□□□ -0.25
RaraP11416 Phykpl-206ENSMUST00000167797 3116 ntAPPRIS P2 TSL 1 (best) BASIC13.5□□□□□ -0.25
RaraP11416 A830082K12Rik-201ENSMUST00000123998 2203 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
RaraP11416 Gm38569-201ENSMUST00000205476 2228 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
RaraP11416 4933415J04Rik-201ENSMUST00000195895 1301 ntBASIC13.5□□□□□ -0.25
RaraP11416 Plekhg5-204ENSMUST00000118648 3818 ntAPPRIS ALT2 TSL 5 BASIC13.5□□□□□ -0.25
RaraP11416 Mecp2-204ENSMUST00000140399 1168 ntTSL 5 BASIC13.5□□□□□ -0.25
RaraP11416 Rmrp-201ENSMUST00000157463 271 ntBASIC13.5□□□□□ -0.25
RaraP11416 Cabp2-202ENSMUST00000159556 781 ntAPPRIS ALT2 TSL 1 (best) BASIC13.5□□□□□ -0.25
RaraP11416 Gm17232-201ENSMUST00000164515 453 ntTSL 2 BASIC13.5□□□□□ -0.25
RaraP11416 Gm26721-201ENSMUST00000181723 992 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
RaraP11416 1700095B10Rik-201ENSMUST00000182349 978 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
RaraP11416 Ighv5-13-201ENSMUST00000193550 290 ntBASIC13.5□□□□□ -0.25
RaraP11416 AC152453.1-201ENSMUST00000218802 1254 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
RaraP11416 AL732506.1-201ENSMUST00000226420 281 ntBASIC13.5□□□□□ -0.25
Retrieved 100 of 76,532 protein–RNA pairs in 57.1 ms