Protein–RNA interactions for Protein: P11260

Lire1, LINE-1 retrotransposable element ORF1 protein, mousemouse

Predictions only

Length 357 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lire1P11260 Plekha5-201ENSMUST00000087622 7382 ntAPPRIS P1 TSL 5 BASIC11.96□□□□□ -0.5
Lire1P11260 Rlbp1-201ENSMUST00000053718 2134 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.5
Lire1P11260 Six4-202ENSMUST00000175693 6817 ntAPPRIS ALT2 TSL 5 BASIC11.96□□□□□ -0.5
Lire1P11260 Ccng1-201ENSMUST00000020576 3512 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.5
Lire1P11260 Phactr1-206ENSMUST00000131942 2056 ntTSL 1 (best) BASIC11.96□□□□□ -0.5
Lire1P11260 Plekhn1-202ENSMUST00000105571 2004 ntTSL 5 BASIC11.96□□□□□ -0.5
Lire1P11260 Fut8-201ENSMUST00000062804 3358 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.5
Lire1P11260 Vmn1r45-201ENSMUST00000054202 3341 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.5
Lire1P11260 Sp2-201ENSMUST00000062652 2367 ntAPPRIS ALT2 TSL 1 (best) BASIC11.96□□□□□ -0.5
Lire1P11260 Brinp1-201ENSMUST00000030036 3212 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.5
Lire1P11260 Pggt1b-201ENSMUST00000025354 2736 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Lire1P11260 AC168058.1-201ENSMUST00000219521 2282 ntBASIC11.95□□□□□ -0.5
Lire1P11260 Gm13859-201ENSMUST00000119936 1423 ntBASIC11.95□□□□□ -0.5
Lire1P11260 Calcr-204ENSMUST00000170266 2175 ntAPPRIS P4 TSL 1 (best) BASIC11.95□□□□□ -0.5
Lire1P11260 Gm18222-201ENSMUST00000202416 1387 ntBASIC11.95□□□□□ -0.5
Lire1P11260 Fam171a1-201ENSMUST00000062934 4129 ntAPPRIS ALT2 TSL 1 (best) BASIC11.95□□□□□ -0.5
Lire1P11260 Slc36a1-203ENSMUST00000108872 5264 ntAPPRIS P1 TSL 5 BASIC11.95□□□□□ -0.5
Lire1P11260 Srp54a-202ENSMUST00000220578 4498 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Lire1P11260 Dip2a-202ENSMUST00000105417 6383 ntAPPRIS ALT2 TSL 5 BASIC11.95□□□□□ -0.5
Lire1P11260 Maged2-204ENSMUST00000112700 2107 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Lire1P11260 Degs2-202ENSMUST00000167978 1729 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
Lire1P11260 Spag6-201ENSMUST00000095132 2458 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Lire1P11260 Pkp3-201ENSMUST00000066873 2848 ntAPPRIS P3 TSL 1 (best) BASIC11.95□□□□□ -0.5
Lire1P11260 Dgcr8-201ENSMUST00000009321 4320 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Lire1P11260 Nmral1-204ENSMUST00000120056 2440 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Lire1P11260 Arhgef2-208ENSMUST00000175911 2030 ntAPPRIS ALT2 TSL 5 BASIC11.95□□□□□ -0.5
Lire1P11260 Rpl22-208ENSMUST00000188151 2048 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Lire1P11260 Lzts3-201ENSMUST00000045761 4201 ntAPPRIS P3 TSL 5 BASIC11.95□□□□□ -0.5
Lire1P11260 Spata3-202ENSMUST00000113344 1047 ntAPPRIS P3 TSL 1 (best) BASIC11.95□□□□□ -0.5
Lire1P11260 Gm8213-201ENSMUST00000118191 441 ntBASIC11.95□□□□□ -0.5
Lire1P11260 Cdk4-202ENSMUST00000120226 714 ntTSL 5 BASIC11.95□□□□□ -0.5
Lire1P11260 Gm13112-201ENSMUST00000138795 1258 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
Lire1P11260 Bik-201ENSMUST00000016902 943 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Lire1P11260 Abhd14a-202ENSMUST00000171678 1262 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Lire1P11260 Aif1-206ENSMUST00000173324 875 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Lire1P11260 2610306M01Rik-201ENSMUST00000185414 1042 ntBASIC11.95□□□□□ -0.5
Lire1P11260 Gm37933-201ENSMUST00000193964 981 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
Lire1P11260 4930432H08Rik-201ENSMUST00000198220 1284 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
Lire1P11260 Gm19710-201ENSMUST00000200257 640 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
Lire1P11260 Gm40466-201ENSMUST00000212174 422 ntBASIC11.95□□□□□ -0.5
Lire1P11260 Gm6013-201ENSMUST00000212264 699 ntBASIC11.95□□□□□ -0.5
Lire1P11260 AC122459.1-201ENSMUST00000228373 885 ntBASIC11.95□□□□□ -0.5
Lire1P11260 AC131997.1-201ENSMUST00000228611 1229 ntBASIC11.95□□□□□ -0.5
Lire1P11260 Tex26-201ENSMUST00000031667 1137 ntAPPRIS ALT2 TSL 1 (best) BASIC11.95□□□□□ -0.5
Lire1P11260 Gm5161-201ENSMUST00000075243 853 ntBASIC11.95□□□□□ -0.5
Lire1P11260 Tldc2-201ENSMUST00000099140 608 ntAPPRIS ALT2 TSL 5 BASIC11.95□□□□□ -0.5
Lire1P11260 Map4k1-203ENSMUST00000208227 2720 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
Lire1P11260 Riok1-201ENSMUST00000021866 2738 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Lire1P11260 Map4k1-201ENSMUST00000085835 2724 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Lire1P11260 Myo7a-213ENSMUST00000205746 6689 ntTSL 5 BASIC11.95□□□□□ -0.5
Lire1P11260 4933434M16Rik-202ENSMUST00000153429 1940 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
Lire1P11260 Fosb-202ENSMUST00000207334 3664 ntTSL 5 BASIC11.95□□□□□ -0.5
Lire1P11260 Kpna1-201ENSMUST00000004054 5039 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Lire1P11260 Rpn1-201ENSMUST00000032143 3633 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Lire1P11260 Litaf-201ENSMUST00000023143 2235 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Lire1P11260 Gm37324-201ENSMUST00000194500 4504 ntBASIC11.95□□□□□ -0.5
Lire1P11260 Olfr222-203ENSMUST00000215339 2166 ntAPPRIS P1 TSL 5 BASIC11.95□□□□□ -0.5
Lire1P11260 Decr2-201ENSMUST00000040907 2187 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Lire1P11260 Ophn1-201ENSMUST00000033560 7170 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Lire1P11260 Set-202ENSMUST00000102866 2824 ntAPPRIS P3 TSL 1 (best) BASIC11.95□□□□□ -0.5
Lire1P11260 Tgfb2-206ENSMUST00000195201 3485 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
Lire1P11260 Shtn1-202ENSMUST00000163821 3767 ntAPPRIS ALT2 TSL 1 (best) BASIC11.95□□□□□ -0.5
Lire1P11260 Car6-202ENSMUST00000105683 1460 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
Lire1P11260 Mrpl45-201ENSMUST00000019026 2431 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Lire1P11260 Gm38115-201ENSMUST00000194317 2413 ntTSL 5 BASIC11.95□□□□□ -0.5
Lire1P11260 Prss47-204ENSMUST00000222769 1406 ntAPPRIS ALT2 TSL 5 BASIC11.94□□□□□ -0.5
Lire1P11260 Lca5-202ENSMUST00000034793 2001 ntAPPRIS ALT2 TSL 1 (best) BASIC11.94□□□□□ -0.5
Lire1P11260 Rnf43-203ENSMUST00000121782 2640 ntTSL 5 BASIC11.94□□□□□ -0.5
Lire1P11260 Fntb-201ENSMUST00000041008 2613 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
Lire1P11260 AC122811.1-201ENSMUST00000222257 2921 ntBASIC11.94□□□□□ -0.5
Lire1P11260 Nr5a1-201ENSMUST00000028084 2947 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Lire1P11260 Ivns1abp-201ENSMUST00000023918 3511 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Lire1P11260 Pip5k1b-201ENSMUST00000025800 2573 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Lire1P11260 Wdr66-202ENSMUST00000121964 4873 ntAPPRIS P1 TSL 5 BASIC11.94□□□□□ -0.5
Lire1P11260 Gm7324-201ENSMUST00000094051 1647 ntAPPRIS P1 BASIC11.94□□□□□ -0.5
Lire1P11260 Cpn2-201ENSMUST00000064856 4583 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Lire1P11260 Ddx24-202ENSMUST00000110001 3063 ntAPPRIS ALT2 TSL 1 (best) BASIC11.94□□□□□ -0.5
Lire1P11260 Ece1-201ENSMUST00000102518 4816 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Lire1P11260 Lsamp-208ENSMUST00000189358 2766 ntTSL 5 BASIC11.94□□□□□ -0.5
Lire1P11260 Camk2d-216ENSMUST00000163226 4204 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
Lire1P11260 Myo7a-203ENSMUST00000107127 6806 ntAPPRIS P3 TSL 5 BASIC11.94□□□□□ -0.5
Lire1P11260 2310022A10Rik-204ENSMUST00000187032 1871 ntAPPRIS ALT2 TSL 1 (best) BASIC11.94□□□□□ -0.5
Lire1P11260 Polr2c-202ENSMUST00000211939 3881 ntTSL 2 BASIC11.94□□□□□ -0.5
Lire1P11260 Snx12-202ENSMUST00000120389 2415 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Lire1P11260 Poldip3-201ENSMUST00000058793 3297 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Lire1P11260 Pkig-203ENSMUST00000109400 1059 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Lire1P11260 Gm42420-201ENSMUST00000126621 634 ntAPPRIS P1 TSL 3 BASIC11.94□□□□□ -0.5
Lire1P11260 Gm11261-203ENSMUST00000132470 838 ntTSL 5 BASIC11.94□□□□□ -0.5
Lire1P11260 Gm2639-201ENSMUST00000156881 1297 ntBASIC11.94□□□□□ -0.5
Lire1P11260 Far2os1-201ENSMUST00000162391 555 ntTSL 2 BASIC11.94□□□□□ -0.5
Lire1P11260 Agtpbp1-213ENSMUST00000167096 508 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
Lire1P11260 Cox16-206ENSMUST00000168463 431 ntTSL 2 BASIC11.94□□□□□ -0.5
Lire1P11260 Gm3893-201ENSMUST00000178882 909 ntAPPRIS P1 TSL 5 BASIC11.94□□□□□ -0.5
Lire1P11260 Mhrt-201ENSMUST00000181782 828 ntTSL 2 BASIC11.94□□□□□ -0.5
Lire1P11260 Gm8565-201ENSMUST00000183259 1014 ntBASIC11.94□□□□□ -0.5
Lire1P11260 1700065I16Rik-202ENSMUST00000185477 813 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
Lire1P11260 Ssr2-202ENSMUST00000192495 620 ntTSL 5 BASIC11.94□□□□□ -0.5
Lire1P11260 1600017P15Rik-202ENSMUST00000193960 890 ntBASIC11.94□□□□□ -0.5
Lire1P11260 Dera-204ENSMUST00000203216 688 ntTSL 5 BASIC11.94□□□□□ -0.5
Lire1P11260 Gm20083-202ENSMUST00000206663 1008 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
Retrieved 100 of 76,532 protein–RNA pairs in 63.3 ms