Protein–RNA interactions for Protein: P09633

Hoxc9, Homeobox protein Hox-C9, mousemouse

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hoxc9P09633 Gm3830-201ENSMUST00000185540 1715 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Hoxc9P09633 Ifitm10-203ENSMUST00000105988 824 ntAPPRIS P4 TSL 2 BASIC16.12■□□□□ 0.17
Hoxc9P09633 Rab15-202ENSMUST00000118604 778 ntTSL 3 BASIC16.12■□□□□ 0.17
Hoxc9P09633 Gm8566-201ENSMUST00000120174 465 ntBASIC16.12■□□□□ 0.17
Hoxc9P09633 Rab15-203ENSMUST00000121716 739 ntTSL 3 BASIC16.12■□□□□ 0.17
Hoxc9P09633 Gm8100-201ENSMUST00000182906 988 ntBASIC16.12■□□□□ 0.17
Hoxc9P09633 Gm27438-201ENSMUST00000183480 110 ntBASIC16.12■□□□□ 0.17
Hoxc9P09633 Gm18711-201ENSMUST00000199341 750 ntBASIC16.12■□□□□ 0.17
Hoxc9P09633 Gm43916-201ENSMUST00000205062 967 ntBASIC16.12■□□□□ 0.17
Hoxc9P09633 Olfr707-202ENSMUST00000208759 1242 ntAPPRIS P1 TSL 3 BASIC16.12■□□□□ 0.17
Hoxc9P09633 Lgals4-207ENSMUST00000208971 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
Hoxc9P09633 Lce3d-201ENSMUST00000059053 491 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Hoxc9P09633 Snf8-201ENSMUST00000006217 1004 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Hoxc9P09633 Smad4-202ENSMUST00000114939 2233 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Hoxc9P09633 Appl1-201ENSMUST00000036570 7642 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Hoxc9P09633 Esyt1-201ENSMUST00000026427 3981 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Hoxc9P09633 Tigd2-201ENSMUST00000062626 3007 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Hoxc9P09633 Dnmt3b-208ENSMUST00000109772 4015 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
Hoxc9P09633 Taf6-203ENSMUST00000110937 2093 ntTSL 5 BASIC16.12■□□□□ 0.17
Hoxc9P09633 Bcat2-203ENSMUST00000209204 2081 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Hoxc9P09633 Galns-203ENSMUST00000212319 2111 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Hoxc9P09633 Ptgdr2-201ENSMUST00000037261 2644 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Hoxc9P09633 Gjc1-202ENSMUST00000092567 1890 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Hoxc9P09633 Tars2-201ENSMUST00000029752 2400 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
Hoxc9P09633 Nrg1-201ENSMUST00000073884 2452 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Hoxc9P09633 Zfp219-202ENSMUST00000166169 3017 ntAPPRIS P2 TSL 1 (best) BASIC16.11■□□□□ 0.17
Hoxc9P09633 Taf3-201ENSMUST00000026888 4792 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Hoxc9P09633 Lnx1-206ENSMUST00000121690 2302 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Hoxc9P09633 Pfkfb3-213ENSMUST00000171188 2058 ntTSL 5 BASIC16.11■□□□□ 0.17
Hoxc9P09633 Arid3a-202ENSMUST00000105376 4892 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
Hoxc9P09633 Chrdl1-203ENSMUST00000112878 4050 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
Hoxc9P09633 Gm11511-201ENSMUST00000118146 540 ntBASIC16.11■□□□□ 0.17
Hoxc9P09633 D630008O14Rik-202ENSMUST00000149909 1043 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Hoxc9P09633 Mocs2-203ENSMUST00000164737 745 ntTSL 3 BASIC16.11■□□□□ 0.17
Hoxc9P09633 Mir7686-201ENSMUST00000200604 57 ntBASIC16.11■□□□□ 0.17
Hoxc9P09633 3300002P13Rik-201ENSMUST00000204020 1092 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Hoxc9P09633 Calca-205ENSMUST00000205933 458 ntTSL 3 BASIC16.11■□□□□ 0.17
Hoxc9P09633 Acy1-208ENSMUST00000214275 1284 ntTSL 5 BASIC16.11■□□□□ 0.17
Hoxc9P09633 Polr2d-201ENSMUST00000025106 956 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Hoxc9P09633 Mrpl41-201ENSMUST00000045604 776 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Hoxc9P09633 Acsl6-210ENSMUST00000108905 5807 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Hoxc9P09633 Gm38355-201ENSMUST00000192514 1570 ntBASIC16.11■□□□□ 0.17
Hoxc9P09633 Tcn2-201ENSMUST00000020710 1897 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
Hoxc9P09633 Pepd-201ENSMUST00000075068 1881 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Hoxc9P09633 Tnks1bp1-201ENSMUST00000048400 4799 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
Hoxc9P09633 Auts2-208ENSMUST00000161374 4216 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
Hoxc9P09633 Tmem56-204ENSMUST00000135818 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
Hoxc9P09633 Slc7a3-201ENSMUST00000073927 2232 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Hoxc9P09633 Pja1-204ENSMUST00000113797 1676 ntAPPRIS ALT2 TSL 2 BASIC16.11■□□□□ 0.17
Hoxc9P09633 Rnf113a2-201ENSMUST00000183146 1383 ntAPPRIS P1 BASIC16.11■□□□□ 0.17
Hoxc9P09633 Klhl26-203ENSMUST00000209415 2919 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Hoxc9P09633 Pccb-201ENSMUST00000035116 2320 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Hoxc9P09633 Ush1g-201ENSMUST00000103037 3306 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Hoxc9P09633 Gm43677-201ENSMUST00000198098 2378 ntBASIC16.11■□□□□ 0.17
Hoxc9P09633 Pramel1-201ENSMUST00000037419 2794 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Hoxc9P09633 Ddi2-201ENSMUST00000102484 9553 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Hoxc9P09633 Jph2-201ENSMUST00000017961 4211 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Hoxc9P09633 Rab10os-202ENSMUST00000177896 2872 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Hoxc9P09633 Reps2-202ENSMUST00000112334 7675 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
Hoxc9P09633 Fam71a-201ENSMUST00000171798 2234 ntAPPRIS P1 BASIC16.1■□□□□ 0.17
Hoxc9P09633 Timp2-201ENSMUST00000017610 3709 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Hoxc9P09633 Gpr45-203ENSMUST00000179766 3776 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Hoxc9P09633 Gm24891-201ENSMUST00000104391 136 ntBASIC16.1■□□□□ 0.17
Hoxc9P09633 Cdk2ap1-202ENSMUST00000111472 648 ntAPPRIS ALT1 TSL 5 BASIC16.1■□□□□ 0.17
Hoxc9P09633 Uox-202ENSMUST00000121133 768 ntTSL 5 BASIC16.1■□□□□ 0.17
Hoxc9P09633 Gm6397-201ENSMUST00000161973 1069 ntBASIC16.1■□□□□ 0.17
Hoxc9P09633 Spaca6-209ENSMUST00000172097 1073 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
Hoxc9P09633 Ssty2-201ENSMUST00000179136 684 ntAPPRIS P1 BASIC16.1■□□□□ 0.17
Hoxc9P09633 Ssty2-202ENSMUST00000190565 1216 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Hoxc9P09633 Gm38139-201ENSMUST00000195806 704 ntTSL 2 BASIC16.1■□□□□ 0.17
Hoxc9P09633 Gm32352-201ENSMUST00000212465 688 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Hoxc9P09633 AC162938.2-204ENSMUST00000216455 984 ntTSL 5 BASIC16.1■□□□□ 0.17
Hoxc9P09633 Neil1-201ENSMUST00000034842 1170 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Hoxc9P09633 Gm7551-201ENSMUST00000089593 1074 ntBASIC16.1■□□□□ 0.17
Hoxc9P09633 Alppl2-202ENSMUST00000188310 2016 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Hoxc9P09633 Olfr533-206ENSMUST00000217179 2825 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
Hoxc9P09633 Nub1-201ENSMUST00000068825 3269 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
Hoxc9P09633 Tnk2os-201ENSMUST00000141256 1392 ntTSL 2 BASIC16.1■□□□□ 0.17
Hoxc9P09633 A430034D21Rik-201ENSMUST00000194339 1802 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Hoxc9P09633 Etv1-211ENSMUST00000162563 1865 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
Hoxc9P09633 Tspan32-202ENSMUST00000075172 1876 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
Hoxc9P09633 Srsf5-202ENSMUST00000110351 1498 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
Hoxc9P09633 Ncf4-201ENSMUST00000096357 1464 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Hoxc9P09633 4632404H12Rik-201ENSMUST00000038450 2791 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
Hoxc9P09633 Picalm-213ENSMUST00000208742 3361 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
Hoxc9P09633 Emb-201ENSMUST00000022242 2923 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Hoxc9P09633 Spon2-201ENSMUST00000046186 2045 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Hoxc9P09633 Camsap1-202ENSMUST00000114167 7981 ntAPPRIS P2 TSL 5 BASIC16.09■□□□□ 0.17
Hoxc9P09633 St8sia6-201ENSMUST00000003509 7618 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Hoxc9P09633 Arhgap20-201ENSMUST00000065496 7161 ntAPPRIS P2 TSL 5 BASIC16.09■□□□□ 0.17
Hoxc9P09633 Rbsn-201ENSMUST00000014694 5334 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Hoxc9P09633 Gm9279-201ENSMUST00000223175 1606 ntBASIC16.09■□□□□ 0.17
Hoxc9P09633 Sgo2a-201ENSMUST00000027202 4939 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Hoxc9P09633 Fnbp1-209ENSMUST00000113562 4515 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
Hoxc9P09633 Tle3-201ENSMUST00000034820 4646 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
Hoxc9P09633 Shank1-202ENSMUST00000107935 6649 ntAPPRIS ALT2 TSL 5 BASIC16.09■□□□□ 0.17
Hoxc9P09633 Myo9b-203ENSMUST00000170242 7297 ntAPPRIS ALT2 TSL 5 BASIC16.09■□□□□ 0.17
Hoxc9P09633 Tesmin-203ENSMUST00000142193 2279 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
Hoxc9P09633 Bin3-201ENSMUST00000022680 1767 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Hoxc9P09633 Gngt2-205ENSMUST00000107711 563 ntAPPRIS P1 TSL 2 BASIC16.09■□□□□ 0.17
Retrieved 100 of 76,532 protein–RNA pairs in 27.5 ms