Protein–RNA interactions for Protein: P09027

Hoxd3, Homeobox protein Hox-D3, mousemouse

Predictions only

Length 433 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hoxd3P09027 Ovol3-201ENSMUST00000189482 731 ntAPPRIS P1 TSL 5 BASIC9.91□□□□□ -0.82
Hoxd3P09027 Gm28411-201ENSMUST00000189864 341 ntTSL 3 BASIC9.91□□□□□ -0.82
Hoxd3P09027 Gm37973-201ENSMUST00000195767 1289 ntBASIC9.91□□□□□ -0.82
Hoxd3P09027 Gm35216-201ENSMUST00000203777 433 ntTSL 2 BASIC9.91□□□□□ -0.82
Hoxd3P09027 4922502N22Rik-201ENSMUST00000204038 1149 ntTSL 1 (best) BASIC9.91□□□□□ -0.82
Hoxd3P09027 Gm44632-201ENSMUST00000207245 474 ntTSL 2 BASIC9.91□□□□□ -0.82
Hoxd3P09027 AC132384.14-201ENSMUST00000219346 1147 ntBASIC9.91□□□□□ -0.82
Hoxd3P09027 Gm7046-201ENSMUST00000221351 977 ntBASIC9.91□□□□□ -0.82
Hoxd3P09027 Net1-206ENSMUST00000222504 447 ntTSL 3 BASIC9.91□□□□□ -0.82
Hoxd3P09027 AC117797.1-201ENSMUST00000223977 695 ntBASIC9.91□□□□□ -0.82
Hoxd3P09027 Cts7-204ENSMUST00000225321 1257 ntBASIC9.91□□□□□ -0.82
Hoxd3P09027 Trem3-201ENSMUST00000048065 994 ntAPPRIS P1 TSL 1 (best) BASIC9.91□□□□□ -0.82
Hoxd3P09027 Olfr1153-201ENSMUST00000052300 957 ntBASIC9.91□□□□□ -0.82
Hoxd3P09027 1700029I15Rik-201ENSMUST00000054316 364 ntAPPRIS P1 TSL 1 (best) BASIC9.91□□□□□ -0.82
Hoxd3P09027 Olfr1441-201ENSMUST00000059033 1088 ntAPPRIS P1 BASIC9.91□□□□□ -0.82
Hoxd3P09027 Mrps21-201ENSMUST00000067298 488 ntAPPRIS P1 TSL 1 (best) BASIC9.91□□□□□ -0.82
Hoxd3P09027 Tprkb-202ENSMUST00000089570 1216 ntTSL 5 BASIC9.91□□□□□ -0.82
Hoxd3P09027 Tmem41b-201ENSMUST00000094097 3840 ntAPPRIS P1 TSL 1 (best) BASIC9.91□□□□□ -0.82
Hoxd3P09027 Usp17le-201ENSMUST00000053464 1626 ntTSL 5 BASIC9.91□□□□□ -0.82
Hoxd3P09027 Madd-209ENSMUST00000111371 5816 ntAPPRIS ALT2 TSL 2 BASIC9.91□□□□□ -0.82
Hoxd3P09027 Madd-210ENSMUST00000111372 5813 ntAPPRIS ALT2 TSL 2 BASIC9.91□□□□□ -0.82
Hoxd3P09027 Tanc1-201ENSMUST00000037526 7873 ntAPPRIS P3 TSL 5 BASIC9.91□□□□□ -0.82
Hoxd3P09027 Fbln1-201ENSMUST00000057410 3659 ntAPPRIS P3 TSL 1 (best) BASIC9.91□□□□□ -0.82
Hoxd3P09027 Gm14371-201ENSMUST00000138925 1518 ntBASIC9.91□□□□□ -0.82
Hoxd3P09027 Fbxl12-203ENSMUST00000131128 4182 ntTSL 1 (best) BASIC9.91□□□□□ -0.82
Hoxd3P09027 Slc6a21-206ENSMUST00000210861 2838 ntAPPRIS P1 TSL 5 BASIC9.91□□□□□ -0.82
Hoxd3P09027 Fgd5-201ENSMUST00000089334 6095 ntAPPRIS P2 TSL 1 (best) BASIC9.91□□□□□ -0.82
Hoxd3P09027 Igbp1b-201ENSMUST00000054786 1456 ntAPPRIS P1 BASIC9.91□□□□□ -0.82
Hoxd3P09027 Actc1-201ENSMUST00000090269 1473 ntAPPRIS P1 TSL 1 (best) BASIC9.91□□□□□ -0.82
Hoxd3P09027 Pdhx-202ENSMUST00000111183 2078 ntTSL 1 (best) BASIC9.91□□□□□ -0.82
Hoxd3P09027 Dcaf11-204ENSMUST00000121622 2379 ntAPPRIS P2 TSL 5 BASIC9.9□□□□□ -0.82
Hoxd3P09027 Sema3f-204ENSMUST00000192727 2383 ntAPPRIS ALT2 TSL 1 (best) BASIC9.9□□□□□ -0.82
Hoxd3P09027 Esr2-201ENSMUST00000076634 3288 ntTSL 1 (best) BASIC9.9□□□□□ -0.82
Hoxd3P09027 Atat1-212ENSMUST00000141662 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC9.9□□□□□ -0.82
Hoxd3P09027 Gm35339-201ENSMUST00000208833 5090 ntAPPRIS P1 TSL 5 BASIC9.9□□□□□ -0.82
Hoxd3P09027 Extl3-201ENSMUST00000022550 5977 ntAPPRIS P1 TSL 5 BASIC9.9□□□□□ -0.82
Hoxd3P09027 Gm3756-201ENSMUST00000169182 1355 ntBASIC9.9□□□□□ -0.82
Hoxd3P09027 Cacna1c-227ENSMUST00000220022 7765 ntTSL 5 BASIC9.9□□□□□ -0.82
Hoxd3P09027 Clec18a-203ENSMUST00000188466 1973 ntAPPRIS ALT2 TSL 5 BASIC9.9□□□□□ -0.82
Hoxd3P09027 Grk6-203ENSMUST00000224118 1997 ntAPPRIS ALT2 BASIC9.9□□□□□ -0.82
Hoxd3P09027 Emc3-201ENSMUST00000032425 1985 ntAPPRIS P1 TSL 1 (best) BASIC9.9□□□□□ -0.82
Hoxd3P09027 Clec18a-201ENSMUST00000039597 1998 ntAPPRIS P5 TSL 5 BASIC9.9□□□□□ -0.82
Hoxd3P09027 Mixl1-201ENSMUST00000027778 2294 ntAPPRIS P1 TSL 1 (best) BASIC9.9□□□□□ -0.82
Hoxd3P09027 A530013C23Rik-201ENSMUST00000130679 2555 ntTSL 1 (best) BASIC9.9□□□□□ -0.82
Hoxd3P09027 Tsku-204ENSMUST00000165901 2514 ntAPPRIS P1 TSL 1 (best) BASIC9.9□□□□□ -0.82
Hoxd3P09027 Phactr2-201ENSMUST00000079698 1934 ntAPPRIS ALT2 TSL 5 BASIC9.9□□□□□ -0.82
Hoxd3P09027 Epha5-204ENSMUST00000113401 5158 ntTSL 1 (best) BASIC9.9□□□□□ -0.82
Hoxd3P09027 Aqr-201ENSMUST00000043160 4888 ntAPPRIS P3 TSL 1 (best) BASIC9.9□□□□□ -0.82
Hoxd3P09027 Gm28359-201ENSMUST00000187470 1322 ntBASIC9.9□□□□□ -0.82
Hoxd3P09027 Trim56-201ENSMUST00000054384 9279 ntAPPRIS P1 TSL 1 (best) BASIC9.9□□□□□ -0.82
Hoxd3P09027 Gm37795-201ENSMUST00000194216 2459 ntBASIC9.9□□□□□ -0.82
Hoxd3P09027 Pnkp-201ENSMUST00000003044 2184 ntAPPRIS P1 TSL 1 (best) BASIC9.9□□□□□ -0.82
Hoxd3P09027 Bbof1-201ENSMUST00000081828 2187 ntAPPRIS P1 TSL 1 (best) BASIC9.9□□□□□ -0.82
Hoxd3P09027 Ptk2-201ENSMUST00000110036 4184 ntAPPRIS P2 TSL 1 (best) BASIC9.9□□□□□ -0.82
Hoxd3P09027 Gm10451-201ENSMUST00000101281 1598 ntTSL 2 BASIC9.9□□□□□ -0.82
Hoxd3P09027 B230206H07Rik-202ENSMUST00000134845 3269 ntTSL 5 BASIC9.9□□□□□ -0.82
Hoxd3P09027 Mir669o-201ENSMUST00000103898 96 ntBASIC9.9□□□□□ -0.82
Hoxd3P09027 Rhbdl2-202ENSMUST00000106204 1120 ntAPPRIS P1 TSL 5 BASIC9.9□□□□□ -0.82
Hoxd3P09027 Tmem53-203ENSMUST00000106434 923 ntTSL 1 (best) BASIC9.9□□□□□ -0.82
Hoxd3P09027 E130114P18Rik-201ENSMUST00000107067 1092 ntAPPRIS ALT2 TSL 1 (best) BASIC9.9□□□□□ -0.82
Hoxd3P09027 Gm12507-201ENSMUST00000119155 415 ntBASIC9.9□□□□□ -0.82
Hoxd3P09027 Gm13492-201ENSMUST00000119772 665 ntBASIC9.9□□□□□ -0.82
Hoxd3P09027 Gm13297-201ENSMUST00000120205 934 ntBASIC9.9□□□□□ -0.82
Hoxd3P09027 Gm14739-201ENSMUST00000120424 802 ntBASIC9.9□□□□□ -0.82
Hoxd3P09027 Gm11622-201ENSMUST00000120525 691 ntBASIC9.9□□□□□ -0.82
Hoxd3P09027 Gm12291-201ENSMUST00000121627 311 ntBASIC9.9□□□□□ -0.82
Hoxd3P09027 Acyp1-204ENSMUST00000121930 634 ntTSL 2 BASIC9.9□□□□□ -0.82
Hoxd3P09027 Gm11851-201ENSMUST00000132219 692 ntTSL 5 BASIC9.9□□□□□ -0.82
Hoxd3P09027 Gm14230-202ENSMUST00000137463 874 ntTSL 2 BASIC9.9□□□□□ -0.82
Hoxd3P09027 H2afz-206ENSMUST00000173790 437 ntTSL 5 BASIC9.9□□□□□ -0.82
Hoxd3P09027 9330185C12Rik-201ENSMUST00000180837 1009 ntTSL 1 (best) BASIC9.9□□□□□ -0.82
Hoxd3P09027 Gm6681-201ENSMUST00000205215 607 ntBASIC9.9□□□□□ -0.82
Hoxd3P09027 Gm6334-201ENSMUST00000207083 228 ntBASIC9.9□□□□□ -0.82
Hoxd3P09027 Olfr489-ps1-201ENSMUST00000210404 967 ntBASIC9.9□□□□□ -0.82
Hoxd3P09027 Gm45242-201ENSMUST00000210666 2129 ntBASIC9.9□□□□□ -0.82
Hoxd3P09027 Scoc-203ENSMUST00000212031 409 ntAPPRIS P3 TSL 1 (best) BASIC9.9□□□□□ -0.82
Hoxd3P09027 Spata33-205ENSMUST00000212523 486 ntTSL 3 BASIC9.9□□□□□ -0.82
Hoxd3P09027 AC153506.3-201ENSMUST00000219287 1029 ntTSL 5 BASIC9.9□□□□□ -0.82
Hoxd3P09027 Abracl-204ENSMUST00000220110 768 ntAPPRIS P1 TSL 1 (best) BASIC9.9□□□□□ -0.82
Hoxd3P09027 Ifi30-202ENSMUST00000222087 981 ntTSL 1 (best) BASIC9.9□□□□□ -0.82
Hoxd3P09027 Gm8227-201ENSMUST00000223306 571 ntBASIC9.9□□□□□ -0.82
Hoxd3P09027 AC132317.1-201ENSMUST00000227227 962 ntBASIC9.9□□□□□ -0.82
Hoxd3P09027 Trpt1-201ENSMUST00000088223 1142 ntAPPRIS P1 TSL 1 (best) BASIC9.9□□□□□ -0.82
Hoxd3P09027 Olfr1106-201ENSMUST00000099867 939 ntAPPRIS P1 BASIC9.9□□□□□ -0.82
Hoxd3P09027 Pdlim5-206ENSMUST00000195975 1845 ntAPPRIS ALT2 TSL 1 (best) BASIC9.9□□□□□ -0.82
Hoxd3P09027 Them4-201ENSMUST00000049822 1781 ntAPPRIS P1 TSL 1 (best) BASIC9.9□□□□□ -0.82
Hoxd3P09027 Ero1lb-201ENSMUST00000071973 4239 ntAPPRIS P1 TSL 1 (best) BASIC9.9□□□□□ -0.82
Hoxd3P09027 Slc25a22-223ENSMUST00000201710 2565 ntAPPRIS P1 TSL 5 BASIC9.9□□□□□ -0.82
Hoxd3P09027 Prkcd-202ENSMUST00000112202 2005 ntTSL 1 (best) BASIC9.9□□□□□ -0.82
Hoxd3P09027 Olfr114-203ENSMUST00000216249 1457 ntAPPRIS P1 TSL 5 BASIC9.9□□□□□ -0.83
Hoxd3P09027 Atxn7l3b-201ENSMUST00000099276 3566 ntAPPRIS P1 BASIC9.9□□□□□ -0.83
Hoxd3P09027 Gm10097-201ENSMUST00000180100 2784 ntAPPRIS P1 BASIC9.9□□□□□ -0.83
Hoxd3P09027 Fam49b-201ENSMUST00000063838 3797 ntAPPRIS P1 TSL 1 (best) BASIC9.9□□□□□ -0.83
Hoxd3P09027 Nxf1-211ENSMUST00000184970 5591 ntTSL 1 (best) BASIC9.9□□□□□ -0.83
Hoxd3P09027 Chia1-201ENSMUST00000079132 1681 ntAPPRIS P1 TSL 1 (best) BASIC9.9□□□□□ -0.83
Hoxd3P09027 Cyp1a2-201ENSMUST00000034860 1940 ntAPPRIS P1 TSL 1 (best) BASIC9.9□□□□□ -0.83
Hoxd3P09027 Phrf1-201ENSMUST00000106027 5248 ntAPPRIS P1 TSL 5 BASIC9.89□□□□□ -0.83
Hoxd3P09027 Htr2c-207ENSMUST00000156697 4654 ntTSL 5 BASIC9.89□□□□□ -0.83
Hoxd3P09027 Olfr71-202ENSMUST00000107862 2587 ntAPPRIS P1 TSL 3 BASIC9.89□□□□□ -0.83
Hoxd3P09027 Tars2-202ENSMUST00000074339 2313 ntAPPRIS ALT2 TSL 1 (best) BASIC9.89□□□□□ -0.83
Retrieved 100 of 76,532 protein–RNA pairs in 73.9 ms