Protein–RNA interactions for Protein: P08121

Col3a1, Collagen alpha-1(III) chain, mousemouse

Predictions only

Length 1,464 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col3a1P08121 Asb8-203ENSMUST00000123922 1162 ntAPPRIS P1 TSL 3 BASIC14.77□□□□□ -0.04
Col3a1P08121 Snrpa-206ENSMUST00000163311 1288 ntAPPRIS P1 TSL 2 BASIC14.77□□□□□ -0.04
Col3a1P08121 Spaca6-209ENSMUST00000172097 1073 ntAPPRIS P1 TSL 5 BASIC14.77□□□□□ -0.04
Col3a1P08121 Ccser2-208ENSMUST00000183007 1293 ntTSL 5 BASIC14.77□□□□□ -0.04
Col3a1P08121 Gm28913-201ENSMUST00000186240 364 ntTSL 3 BASIC14.77□□□□□ -0.04
Col3a1P08121 Gm43050-202ENSMUST00000201152 651 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
Col3a1P08121 Zfp36l1-203ENSMUST00000218835 292 ntTSL 3 BASIC14.77□□□□□ -0.04
Col3a1P08121 AC154276.3-201ENSMUST00000227643 998 ntBASIC14.77□□□□□ -0.04
Col3a1P08121 Hmgb1-202ENSMUST00000093196 1092 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
Col3a1P08121 Chd4-202ENSMUST00000112390 6537 ntAPPRIS ALT2 TSL 5 BASIC14.77□□□□□ -0.04
Col3a1P08121 Olfr1349-204ENSMUST00000207820 1325 ntAPPRIS P1 TSL 3 BASIC14.77□□□□□ -0.04
Col3a1P08121 A430108G06Rik-201ENSMUST00000153461 1428 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
Col3a1P08121 Gm12915-201ENSMUST00000131381 1499 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
Col3a1P08121 AC127242.1-201ENSMUST00000222861 1464 ntTSL 3 BASIC14.77□□□□□ -0.04
Col3a1P08121 Ip6k2-201ENSMUST00000085018 1846 ntAPPRIS P2 TSL 1 (best) BASIC14.77□□□□□ -0.04
Col3a1P08121 Il21r-202ENSMUST00000206103 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.04
Col3a1P08121 Crmp1-201ENSMUST00000031004 2906 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
Col3a1P08121 Zkscan7-202ENSMUST00000215872 4035 ntTSL 5 BASIC14.77□□□□□ -0.05
Col3a1P08121 Syne3-201ENSMUST00000067005 5097 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.05
Col3a1P08121 Nrcam-202ENSMUST00000110748 6275 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.05
Col3a1P08121 Nedd4l-202ENSMUST00000163516 8163 ntAPPRIS P1 TSL 5 BASIC14.77□□□□□ -0.05
Col3a1P08121 Vars-201ENSMUST00000087315 4137 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Col3a1P08121 Kcng1-202ENSMUST00000109191 4089 ntAPPRIS P1 TSL 5 BASIC14.77□□□□□ -0.05
Col3a1P08121 Rapgef3-217ENSMUST00000177352 3395 ntAPPRIS ALT1 TSL 5 BASIC14.77□□□□□ -0.05
Col3a1P08121 Ocln-201ENSMUST00000022140 2839 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Col3a1P08121 Rtkn2-203ENSMUST00000117086 2246 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.05
Col3a1P08121 Mrps17-206ENSMUST00000121339 2182 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Col3a1P08121 Gm45003-201ENSMUST00000205875 2158 ntBASIC14.77□□□□□ -0.05
Col3a1P08121 Trmt1-204ENSMUST00000109768 2044 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.05
Col3a1P08121 Gm8038-201ENSMUST00000164674 2044 ntBASIC14.77□□□□□ -0.05
Col3a1P08121 Pex2-204ENSMUST00000165309 2038 ntAPPRIS P1 TSL 5 BASIC14.77□□□□□ -0.05
Col3a1P08121 Zfp61-208ENSMUST00000165241 1668 ntAPPRIS P1 TSL 5 BASIC14.77□□□□□ -0.05
Col3a1P08121 Ccdc159-202ENSMUST00000170304 1519 ntAPPRIS ALT2 TSL 1 (best) BASIC14.76□□□□□ -0.05
Col3a1P08121 AC160405.1-201ENSMUST00000218207 1545 ntBASIC14.76□□□□□ -0.05
Col3a1P08121 Spert-204ENSMUST00000169658 1474 ntAPPRIS ALT2 TSL 3 BASIC14.76□□□□□ -0.05
Col3a1P08121 Evc-201ENSMUST00000031005 4325 ntAPPRIS P2 TSL 1 (best) BASIC14.76□□□□□ -0.05
Col3a1P08121 Tmem132e-202ENSMUST00000092852 4105 ntAPPRIS ALT2 TSL 2 BASIC14.76□□□□□ -0.05
Col3a1P08121 Vamp5-202ENSMUST00000101285 623 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Col3a1P08121 Rpl11-201ENSMUST00000102536 833 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Col3a1P08121 Rab15-202ENSMUST00000118604 778 ntTSL 3 BASIC14.76□□□□□ -0.05
Col3a1P08121 Rpl28-ps1-201ENSMUST00000121497 414 ntBASIC14.76□□□□□ -0.05
Col3a1P08121 Rab15-203ENSMUST00000121716 739 ntTSL 3 BASIC14.76□□□□□ -0.05
Col3a1P08121 Gm12208-201ENSMUST00000122004 163 ntBASIC14.76□□□□□ -0.05
Col3a1P08121 Gm10051-201ENSMUST00000145209 414 ntBASIC14.76□□□□□ -0.05
Col3a1P08121 Gm13391-202ENSMUST00000147685 816 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
Col3a1P08121 Rpl41-203ENSMUST00000176683 437 ntAPPRIS P2 TSL 2 BASIC14.76□□□□□ -0.05
Col3a1P08121 7530416G11Rik-201ENSMUST00000178942 1161 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Col3a1P08121 Gm27438-201ENSMUST00000183480 110 ntBASIC14.76□□□□□ -0.05
Col3a1P08121 Gm28375-201ENSMUST00000185304 430 ntTSL 3 BASIC14.76□□□□□ -0.05
Col3a1P08121 Gm4034-201ENSMUST00000187674 480 ntBASIC14.76□□□□□ -0.05
Col3a1P08121 Creb1-209ENSMUST00000190348 1260 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
Col3a1P08121 Gm42629-201ENSMUST00000199063 1102 ntBASIC14.76□□□□□ -0.05
Col3a1P08121 Rbp2-201ENSMUST00000035029 672 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Col3a1P08121 Immp1l-201ENSMUST00000037499 955 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Col3a1P08121 Lgals1-201ENSMUST00000089377 800 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Col3a1P08121 Vps35-201ENSMUST00000034131 3474 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Col3a1P08121 Kctd11-201ENSMUST00000050555 3146 ntAPPRIS P1 BASIC14.76□□□□□ -0.05
Col3a1P08121 Gm9947-201ENSMUST00000067599 2920 ntBASIC14.76□□□□□ -0.05
Col3a1P08121 Tcf4-250ENSMUST00000202458 2610 ntTSL 5 BASIC14.76□□□□□ -0.05
Col3a1P08121 Zfp433-202ENSMUST00000200889 2384 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Col3a1P08121 Gm32687-201ENSMUST00000220314 2379 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Col3a1P08121 Pltp-202ENSMUST00000109316 2226 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Col3a1P08121 Gm2420-201ENSMUST00000119864 2149 ntBASIC14.76□□□□□ -0.05
Col3a1P08121 Ercc8-201ENSMUST00000054835 2111 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Col3a1P08121 Nes-203ENSMUST00000160694 5958 ntAPPRIS ALT2 TSL 1 (best) BASIC14.76□□□□□ -0.05
Col3a1P08121 Atp2a3-207ENSMUST00000163326 4606 ntAPPRIS ALT2 TSL 5 BASIC14.76□□□□□ -0.05
Col3a1P08121 Tspan1-201ENSMUST00000030465 1985 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Col3a1P08121 Dnajb14-201ENSMUST00000090178 9477 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Col3a1P08121 Pex5-204ENSMUST00000112531 3075 ntAPPRIS ALT1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Col3a1P08121 Ralgapa1-202ENSMUST00000110687 7874 ntAPPRIS P2 TSL 1 (best) BASIC14.76□□□□□ -0.05
Col3a1P08121 Adamtsl4-202ENSMUST00000117782 4036 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Col3a1P08121 Wscd1-201ENSMUST00000021168 2757 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Col3a1P08121 2610001J05Rik-203ENSMUST00000185219 1606 ntAPPRIS P1 BASIC14.76□□□□□ -0.05
Col3a1P08121 Gsn-205ENSMUST00000201185 2607 ntAPPRIS ALT2 TSL 1 (best) BASIC14.76□□□□□ -0.05
Col3a1P08121 Zscan10-202ENSMUST00000115509 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC14.76□□□□□ -0.05
Col3a1P08121 Gm44793-201ENSMUST00000136923 582 ntTSL 2 BASIC14.76□□□□□ -0.05
Col3a1P08121 Gm5733-201ENSMUST00000190232 939 ntBASIC14.76□□□□□ -0.05
Col3a1P08121 Gm28694-201ENSMUST00000190681 722 ntTSL 3 BASIC14.76□□□□□ -0.05
Col3a1P08121 Gm42682-201ENSMUST00000198349 1265 ntBASIC14.76□□□□□ -0.05
Col3a1P08121 Gm2965-201ENSMUST00000198365 343 ntBASIC14.76□□□□□ -0.05
Col3a1P08121 Gm45118-201ENSMUST00000208928 825 ntBASIC14.76□□□□□ -0.05
Col3a1P08121 Gm29208-205ENSMUST00000214517 1056 ntTSL 5 BASIC14.76□□□□□ -0.05
Col3a1P08121 Csrp2-203ENSMUST00000219502 544 ntTSL 3 BASIC14.76□□□□□ -0.05
Col3a1P08121 1700011B04Rik-212ENSMUST00000223526 889 ntTSL 5 BASIC14.76□□□□□ -0.05
Col3a1P08121 AC151275.1-201ENSMUST00000224870 585 ntBASIC14.76□□□□□ -0.05
Col3a1P08121 Gm6781-201ENSMUST00000038304 1242 ntBASIC14.76□□□□□ -0.05
Col3a1P08121 Lcn8-201ENSMUST00000038482 651 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Col3a1P08121 Gm5705-201ENSMUST00000066241 711 ntBASIC14.76□□□□□ -0.05
Col3a1P08121 Gm44260-201ENSMUST00000204946 2094 ntBASIC14.76□□□□□ -0.05
Col3a1P08121 Gm27196-201ENSMUST00000184787 2582 ntBASIC14.75□□□□□ -0.05
Col3a1P08121 Fzd5-201ENSMUST00000063982 6915 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Col3a1P08121 Ate1-201ENSMUST00000033139 4735 ntAPPRIS P4 TSL 1 (best) BASIC14.75□□□□□ -0.05
Col3a1P08121 Gm10305-201ENSMUST00000195331 2475 ntBASIC14.75□□□□□ -0.05
Col3a1P08121 Zbtb44-205ENSMUST00000216649 3157 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
Col3a1P08121 Klhl26-201ENSMUST00000066597 2991 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Col3a1P08121 Kars-202ENSMUST00000093120 2131 ntAPPRIS ALT2 TSL 1 (best) BASIC14.75□□□□□ -0.05
Col3a1P08121 Wnk1-202ENSMUST00000060043 10575 ntAPPRIS P3 TSL 1 (best) BASIC14.75□□□□□ -0.05
Col3a1P08121 Ermard-203ENSMUST00000097393 2535 ntAPPRIS P3 TSL 1 (best) BASIC14.75□□□□□ -0.05
Col3a1P08121 0610010F05Rik-208ENSMUST00000180260 4128 ntAPPRIS P2 TSL 1 (best) BASIC14.75□□□□□ -0.05
Col3a1P08121 Sema6c-202ENSMUST00000090823 4029 ntAPPRIS ALT2 TSL 1 (best) BASIC14.75□□□□□ -0.05
Retrieved 100 of 76,532 protein–RNA pairs in 86.2 ms