Protein–RNA interactions for Protein: A3KFM7

Chd6, Chromodomain-helicase-DNA-binding protein 6, mousemouse

Predictions only

Length 2,711 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd6A3KFM7 Gm12111-201ENSMUST00000150073 349 ntTSL 3 BASIC10.06□□□□□ -0.8
Chd6A3KFM7 Gm16339-201ENSMUST00000160954 929 ntTSL 5 BASIC10.06□□□□□ -0.8
Chd6A3KFM7 Gas5-224ENSMUST00000162558 502 ntTSL 1 (best) BASIC10.06□□□□□ -0.8
Chd6A3KFM7 Pfdn5-203ENSMUST00000165671 830 ntTSL 2 BASIC10.06□□□□□ -0.8
Chd6A3KFM7 Tcl1-204ENSMUST00000176579 760 ntTSL 2 BASIC10.06□□□□□ -0.8
Chd6A3KFM7 Gm26838-201ENSMUST00000180485 911 ntTSL 1 (best) BASIC10.06□□□□□ -0.8
Chd6A3KFM7 Mir7088-201ENSMUST00000184227 86 ntBASIC10.06□□□□□ -0.8
Chd6A3KFM7 Psmb6-201ENSMUST00000018430 798 ntAPPRIS P1 TSL 1 (best) BASIC10.06□□□□□ -0.8
Chd6A3KFM7 1700065I16Rik-201ENSMUST00000185277 512 ntBASIC10.06□□□□□ -0.8
Chd6A3KFM7 Gm6652-201ENSMUST00000186414 1070 ntBASIC10.06□□□□□ -0.8
Chd6A3KFM7 4930413E15Rik-201ENSMUST00000202500 1290 ntTSL 1 (best) BASIC10.06□□□□□ -0.8
Chd6A3KFM7 AI463170-204ENSMUST00000220157 447 ntTSL 3 BASIC10.06□□□□□ -0.8
Chd6A3KFM7 Ift43-201ENSMUST00000054565 773 ntAPPRIS P2 TSL 1 (best) BASIC10.06□□□□□ -0.8
Chd6A3KFM7 Gm44401-201ENSMUST00000204462 2375 ntBASIC10.05□□□□□ -0.8
Chd6A3KFM7 Spcs2-201ENSMUST00000036274 2909 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
Chd6A3KFM7 Prok2-203ENSMUST00000101120 1450 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
Chd6A3KFM7 R3hdm2-212ENSMUST00000166820 4281 ntAPPRIS P2 TSL 5 BASIC10.05□□□□□ -0.8
Chd6A3KFM7 Pla2g6-206ENSMUST00000173163 3018 ntTSL 5 BASIC10.05□□□□□ -0.8
Chd6A3KFM7 Chtf18-201ENSMUST00000048054 3214 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
Chd6A3KFM7 Il1rapl2-202ENSMUST00000113063 3437 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
Chd6A3KFM7 Dpt-201ENSMUST00000027861 1724 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
Chd6A3KFM7 Slc22a2-201ENSMUST00000046959 2115 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
Chd6A3KFM7 Sdha-201ENSMUST00000022062 2900 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
Chd6A3KFM7 Brsk1-204ENSMUST00000205666 1398 ntTSL 1 (best) BASIC10.05□□□□□ -0.8
Chd6A3KFM7 Prkacb-202ENSMUST00000102515 4347 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
Chd6A3KFM7 Lyplal1-201ENSMUST00000045388 1578 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
Chd6A3KFM7 Hmox1-201ENSMUST00000005548 1569 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
Chd6A3KFM7 Tle3-205ENSMUST00000159630 4065 ntTSL 1 (best) BASIC10.05□□□□□ -0.8
Chd6A3KFM7 Vopp1-202ENSMUST00000127485 2908 ntTSL 1 (best) BASIC10.05□□□□□ -0.8
Chd6A3KFM7 Gtf3c5-201ENSMUST00000028157 2739 ntAPPRIS P3 TSL 1 (best) BASIC10.05□□□□□ -0.8
Chd6A3KFM7 Ptprm-202ENSMUST00000223982 4802 ntAPPRIS P2 BASIC10.05□□□□□ -0.8
Chd6A3KFM7 Gm13192-201ENSMUST00000101199 208 ntBASIC10.05□□□□□ -0.8
Chd6A3KFM7 Crygf-202ENSMUST00000114027 594 ntTSL 2 BASIC10.05□□□□□ -0.8
Chd6A3KFM7 Gm10443-201ENSMUST00000119024 210 ntBASIC10.05□□□□□ -0.8
Chd6A3KFM7 Gm5380-201ENSMUST00000119296 2136 ntBASIC10.05□□□□□ -0.8
Chd6A3KFM7 Cox6c-203ENSMUST00000153512 738 ntAPPRIS P1 TSL 2 BASIC10.05□□□□□ -0.8
Chd6A3KFM7 Gm24809-201ENSMUST00000175318 271 ntBASIC10.05□□□□□ -0.8
Chd6A3KFM7 Gm20568-201ENSMUST00000197129 208 ntBASIC10.05□□□□□ -0.8
Chd6A3KFM7 Ccdc114-205ENSMUST00000211367 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC10.05□□□□□ -0.8
Chd6A3KFM7 Gm45909-201ENSMUST00000212413 1031 ntBASIC10.05□□□□□ -0.8
Chd6A3KFM7 1700013F07Rik-201ENSMUST00000029485 661 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
Chd6A3KFM7 Chmp3-202ENSMUST00000065364 998 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
Chd6A3KFM7 Prss3-201ENSMUST00000096003 822 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
Chd6A3KFM7 Cd37-202ENSMUST00000098461 1227 ntAPPRIS P3 TSL 1 (best) BASIC10.05□□□□□ -0.8
Chd6A3KFM7 Gm43334-201ENSMUST00000197740 1318 ntBASIC10.05□□□□□ -0.8
Chd6A3KFM7 Cxcl16-201ENSMUST00000019064 2699 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
Chd6A3KFM7 Zfp467-203ENSMUST00000114558 3115 ntTSL 1 (best) BASIC10.05□□□□□ -0.8
Chd6A3KFM7 Spag1-201ENSMUST00000047348 3646 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
Chd6A3KFM7 F11r-201ENSMUST00000043839 2518 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
Chd6A3KFM7 Nfatc3-201ENSMUST00000109308 5984 ntAPPRIS P2 TSL 1 (best) BASIC10.05□□□□□ -0.8
Chd6A3KFM7 Atp11a-202ENSMUST00000091237 7443 ntAPPRIS P3 TSL 1 (best) BASIC10.05□□□□□ -0.8
Chd6A3KFM7 Timp2-201ENSMUST00000017610 3709 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
Chd6A3KFM7 Txndc2-201ENSMUST00000050236 1899 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
Chd6A3KFM7 Gata2-201ENSMUST00000015197 3571 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
Chd6A3KFM7 Nsd3-203ENSMUST00000136107 3818 ntTSL 1 (best) BASIC10.05□□□□□ -0.8
Chd6A3KFM7 Sf3a2-203ENSMUST00000148665 2213 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
Chd6A3KFM7 Lnx1-209ENSMUST00000153543 2208 ntTSL 5 BASIC10.05□□□□□ -0.8
Chd6A3KFM7 Gm26513-201ENSMUST00000181802 2489 ntBASIC10.05□□□□□ -0.8
Chd6A3KFM7 Ssh3-201ENSMUST00000037992 2728 ntAPPRIS P2 TSL 1 (best) BASIC10.05□□□□□ -0.8
Chd6A3KFM7 Matn2-206ENSMUST00000228570 2798 ntBASIC10.05□□□□□ -0.8
Chd6A3KFM7 Trp53-203ENSMUST00000108658 1771 ntAPPRIS P3 TSL 1 (best) BASIC10.05□□□□□ -0.8
Chd6A3KFM7 Trp53-201ENSMUST00000005371 1772 ntAPPRIS ALT2 TSL 1 (best) BASIC10.05□□□□□ -0.8
Chd6A3KFM7 Ighv5-9-201ENSMUST00000103448 418 ntAPPRIS P1 BASIC10.05□□□□□ -0.8
Chd6A3KFM7 Gm11560-201ENSMUST00000117567 948 ntBASIC10.05□□□□□ -0.8
Chd6A3KFM7 Gm14270-201ENSMUST00000118388 846 ntBASIC10.05□□□□□ -0.8
Chd6A3KFM7 Eif5a-212ENSMUST00000153652 840 ntTSL 1 (best) BASIC10.05□□□□□ -0.8
Chd6A3KFM7 Nabp1-206ENSMUST00000188051 680 ntTSL 3 BASIC10.05□□□□□ -0.8
Chd6A3KFM7 Gm43506-201ENSMUST00000200675 753 ntBASIC10.05□□□□□ -0.8
Chd6A3KFM7 AC159263.1-201ENSMUST00000220746 482 ntTSL 5 BASIC10.05□□□□□ -0.8
Chd6A3KFM7 AC164099.1-201ENSMUST00000227780 333 ntBASIC10.05□□□□□ -0.8
Chd6A3KFM7 Spata46-201ENSMUST00000056991 771 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
Chd6A3KFM7 Sik3-204ENSMUST00000126865 6287 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
Chd6A3KFM7 A430018G15Rik-201ENSMUST00000124210 1314 ntTSL 1 (best) BASIC10.04□□□□□ -0.8
Chd6A3KFM7 Rnf38-202ENSMUST00000098098 5061 ntTSL 1 (best) BASIC10.04□□□□□ -0.8
Chd6A3KFM7 Ucp3-201ENSMUST00000032958 2448 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
Chd6A3KFM7 Khdrbs2-205ENSMUST00000189878 3259 ntTSL 1 (best) BASIC10.04□□□□□ -0.8
Chd6A3KFM7 Stam-202ENSMUST00000102960 5000 ntAPPRIS P2 TSL 1 (best) BASIC10.04□□□□□ -0.8
Chd6A3KFM7 Evi5l-203ENSMUST00000176149 3938 ntAPPRIS ALT2 TSL 5 BASIC10.04□□□□□ -0.8
Chd6A3KFM7 Ctdspl2-204ENSMUST00000110578 3386 ntAPPRIS ALT1 TSL 1 (best) BASIC10.04□□□□□ -0.8
Chd6A3KFM7 Slc6a8-201ENSMUST00000033752 3964 ntTSL 1 (best) BASIC10.04□□□□□ -0.8
Chd6A3KFM7 4930550C17Rik-201ENSMUST00000181629 1411 ntTSL 1 (best) BASIC10.04□□□□□ -0.8
Chd6A3KFM7 Gabrg3-201ENSMUST00000068394 1724 ntTSL 1 (best) BASIC10.04□□□□□ -0.8
Chd6A3KFM7 P2rx6-201ENSMUST00000023441 2345 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
Chd6A3KFM7 Mslnl-201ENSMUST00000047098 2628 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
Chd6A3KFM7 Kank2-201ENSMUST00000034717 5040 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
Chd6A3KFM7 Vps26b-201ENSMUST00000034470 3575 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
Chd6A3KFM7 Arid4b-202ENSMUST00000110533 3020 ntTSL 1 (best) BASIC10.04□□□□□ -0.8
Chd6A3KFM7 Mob1b-201ENSMUST00000006424 2705 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
Chd6A3KFM7 Dtnb-223ENSMUST00000174547 2112 ntTSL 5 BASIC10.04□□□□□ -0.8
Chd6A3KFM7 Cacna1h-205ENSMUST00000159610 8230 ntAPPRIS ALT2 TSL 1 (best) BASIC10.04□□□□□ -0.8
Chd6A3KFM7 Nsd3-208ENSMUST00000146919 3652 ntTSL 1 (best) BASIC10.04□□□□□ -0.8
Chd6A3KFM7 Angptl7-201ENSMUST00000030840 2157 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
Chd6A3KFM7 Ltbp4-204ENSMUST00000118961 3444 ntTSL 1 (best) BASIC10.04□□□□□ -0.8
Chd6A3KFM7 Creb3l4-201ENSMUST00000029547 1553 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
Chd6A3KFM7 Cenpx-204ENSMUST00000106155 700 ntTSL 1 (best) BASIC10.04□□□□□ -0.8
Chd6A3KFM7 Gm15625-201ENSMUST00000117617 1093 ntBASIC10.04□□□□□ -0.8
Chd6A3KFM7 Gm11957-201ENSMUST00000118304 779 ntBASIC10.04□□□□□ -0.8
Chd6A3KFM7 Gm15617-201ENSMUST00000118973 771 ntBASIC10.04□□□□□ -0.8
Chd6A3KFM7 Spdye4a-202ENSMUST00000160502 1245 ntTSL 1 (best) BASIC10.04□□□□□ -0.8
Chd6A3KFM7 Gm28826-201ENSMUST00000190006 488 ntTSL 2 BASIC10.04□□□□□ -0.8
Retrieved 100 of 76,532 protein–RNA pairs in 49.1 ms