Protein–RNA interactions for Protein: Q9ERG0

Lima1, LIM domain and actin-binding protein 1, mousemouse

Known RBP Predictions only

Length 753 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lima1Q9ERG0 Zfp541-202ENSMUST00000209369 4879 ntAPPRIS P2 TSL 5 BASIC12.37□□□□□ -0.43
Lima1Q9ERG0 Polr1b-201ENSMUST00000028874 2769 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Lima1Q9ERG0 Gnb4-205ENSMUST00000155737 5997 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Lima1Q9ERG0 Gm2238-201ENSMUST00000192074 3669 ntBASIC12.37□□□□□ -0.43
Lima1Q9ERG0 Bdnf-205ENSMUST00000111045 3973 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Lima1Q9ERG0 Klf11-201ENSMUST00000020982 4086 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Lima1Q9ERG0 Arhgap30-201ENSMUST00000056449 4494 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Lima1Q9ERG0 Gm13612-201ENSMUST00000119276 390 ntBASIC12.37□□□□□ -0.43
Lima1Q9ERG0 Gm20521-201ENSMUST00000134077 1245 ntAPPRIS P1 TSL 5 BASIC12.37□□□□□ -0.43
Lima1Q9ERG0 Gm44069-201ENSMUST00000204898 506 ntBASIC12.37□□□□□ -0.43
Lima1Q9ERG0 Gm33460-201ENSMUST00000212286 536 ntTSL 5 BASIC12.37□□□□□ -0.43
Lima1Q9ERG0 Rdh5-201ENSMUST00000026406 1258 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Lima1Q9ERG0 Atp5d-201ENSMUST00000003156 931 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Lima1Q9ERG0 Elane-201ENSMUST00000046091 984 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Lima1Q9ERG0 Phgr1-201ENSMUST00000061360 538 ntAPPRIS ALT2 TSL 5 BASIC12.37□□□□□ -0.43
Lima1Q9ERG0 Gm13199-201ENSMUST00000071016 747 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Lima1Q9ERG0 Srek1-201ENSMUST00000074616 3934 ntAPPRIS P1 TSL 5 BASIC12.37□□□□□ -0.43
Lima1Q9ERG0 Trnt1-203ENSMUST00000113248 1398 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Lima1Q9ERG0 Bckdhb-205ENSMUST00000190166 1398 ntAPPRIS P3 TSL 1 (best) BASIC12.37□□□□□ -0.43
Lima1Q9ERG0 Igsf23-204ENSMUST00000208974 1850 ntAPPRIS ALT2 TSL 1 (best) BASIC12.37□□□□□ -0.43
Lima1Q9ERG0 Il21r-201ENSMUST00000033000 2499 ntAPPRIS P2 TSL 1 (best) BASIC12.37□□□□□ -0.43
Lima1Q9ERG0 Mtus2-203ENSMUST00000085558 7543 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Lima1Q9ERG0 Gm44831-201ENSMUST00000208469 2989 ntBASIC12.37□□□□□ -0.43
Lima1Q9ERG0 Zfp467-204ENSMUST00000114559 3163 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Lima1Q9ERG0 Brap-202ENSMUST00000111765 3861 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Lima1Q9ERG0 Wdr4-207ENSMUST00000171171 4153 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Lima1Q9ERG0 Vsir-203ENSMUST00000105460 4843 ntAPPRIS ALT1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Lima1Q9ERG0 Vsir-201ENSMUST00000020301 4846 ntAPPRIS P3 TSL 1 (best) BASIC12.37□□□□□ -0.43
Lima1Q9ERG0 Gm37324-201ENSMUST00000194500 4504 ntBASIC12.37□□□□□ -0.43
Lima1Q9ERG0 Med1-202ENSMUST00000092735 2627 ntAPPRIS ALT2 TSL 1 (best) BASIC12.37□□□□□ -0.43
Lima1Q9ERG0 Aebp2-206ENSMUST00000161335 2524 ntAPPRIS ALT2 TSL 1 (best) BASIC12.37□□□□□ -0.43
Lima1Q9ERG0 Slc26a6-201ENSMUST00000098376 2402 ntAPPRIS ALT2 TSL 5 BASIC12.37□□□□□ -0.43
Lima1Q9ERG0 Slc9b1-201ENSMUST00000078568 2248 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Lima1Q9ERG0 Gm42706-201ENSMUST00000199733 1910 ntBASIC12.37□□□□□ -0.43
Lima1Q9ERG0 Myo15b-208ENSMUST00000222123 5154 ntTSL 5 BASIC12.37□□□□□ -0.43
Lima1Q9ERG0 Cul5-201ENSMUST00000034529 3585 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Lima1Q9ERG0 Fut1-201ENSMUST00000008605 2580 ntAPPRIS P3 TSL 1 (best) BASIC12.36□□□□□ -0.43
Lima1Q9ERG0 St6galnac6-201ENSMUST00000072111 2277 ntAPPRIS P3 TSL 5 BASIC12.36□□□□□ -0.43
Lima1Q9ERG0 Psg23-201ENSMUST00000057810 2179 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Lima1Q9ERG0 Mast1-202ENSMUST00000119820 2078 ntTSL 5 BASIC12.36□□□□□ -0.43
Lima1Q9ERG0 Ptprk-202ENSMUST00000218276 4754 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
Lima1Q9ERG0 H3f3b-201ENSMUST00000016703 1993 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Lima1Q9ERG0 Pipox-201ENSMUST00000017597 1998 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Lima1Q9ERG0 Fyttd1-211ENSMUST00000171325 4295 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
Lima1Q9ERG0 Jph2-202ENSMUST00000109425 4155 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Lima1Q9ERG0 Chil1-201ENSMUST00000082060 1687 ntAPPRIS P2 TSL 1 (best) BASIC12.36□□□□□ -0.43
Lima1Q9ERG0 Runx3-201ENSMUST00000056977 3884 ntAPPRIS P2 TSL 1 (best) BASIC12.36□□□□□ -0.43
Lima1Q9ERG0 Zfp426-202ENSMUST00000115562 3557 ntAPPRIS P3 TSL 1 (best) BASIC12.36□□□□□ -0.43
Lima1Q9ERG0 Epb41l5-201ENSMUST00000027632 2523 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Lima1Q9ERG0 Wfdc1-201ENSMUST00000024107 1371 ntAPPRIS P2 TSL 1 (best) BASIC12.36□□□□□ -0.43
Lima1Q9ERG0 Fam78a-201ENSMUST00000056406 4107 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Lima1Q9ERG0 Wdr20rt-201ENSMUST00000046331 2228 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Lima1Q9ERG0 Mul1-203ENSMUST00000105815 473 ntTSL 3 BASIC12.36□□□□□ -0.43
Lima1Q9ERG0 Insrr-202ENSMUST00000107582 4694 ntAPPRIS P1 TSL 5 BASIC12.36□□□□□ -0.43
Lima1Q9ERG0 Fgf18-202ENSMUST00000109363 991 ntTSL 3 BASIC12.36□□□□□ -0.43
Lima1Q9ERG0 Vps29-204ENSMUST00000118830 1014 ntAPPRIS ALT1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Lima1Q9ERG0 Gm13834-201ENSMUST00000123757 137 ntTSL 3 BASIC12.36□□□□□ -0.43
Lima1Q9ERG0 Mecp2-204ENSMUST00000140399 1168 ntTSL 5 BASIC12.36□□□□□ -0.43
Lima1Q9ERG0 2810429I04Rik-210ENSMUST00000189464 868 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
Lima1Q9ERG0 Ighv5-13-201ENSMUST00000193550 290 ntBASIC12.36□□□□□ -0.43
Lima1Q9ERG0 1600017P15Rik-202ENSMUST00000193960 890 ntBASIC12.36□□□□□ -0.43
Lima1Q9ERG0 Gm38297-201ENSMUST00000195122 1057 ntBASIC12.36□□□□□ -0.43
Lima1Q9ERG0 C030018K13Rik-202ENSMUST00000196829 712 ntTSL 3 BASIC12.36□□□□□ -0.43
Lima1Q9ERG0 Fam24a-203ENSMUST00000207784 600 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Lima1Q9ERG0 Zfp787-205ENSMUST00000207957 880 ntTSL 5 BASIC12.36□□□□□ -0.43
Lima1Q9ERG0 Wdyhv1-206ENSMUST00000227142 786 ntBASIC12.36□□□□□ -0.43
Lima1Q9ERG0 Tubgcp2-201ENSMUST00000026547 2960 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Lima1Q9ERG0 Csrp3-201ENSMUST00000032658 877 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Lima1Q9ERG0 Sod2-201ENSMUST00000007012 3824 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Lima1Q9ERG0 Rhox2e-201ENSMUST00000072167 799 ntAPPRIS P1 TSL 5 BASIC12.36□□□□□ -0.43
Lima1Q9ERG0 Kdm5c-201ENSMUST00000082177 5520 ntAPPRIS ALT2 TSL 5 BASIC12.36□□□□□ -0.43
Lima1Q9ERG0 Gipr-201ENSMUST00000094790 2856 ntAPPRIS P1 TSL 5 BASIC12.36□□□□□ -0.43
Lima1Q9ERG0 Vps33b-201ENSMUST00000032749 2574 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Lima1Q9ERG0 Ikbip-201ENSMUST00000020149 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC12.36□□□□□ -0.43
Lima1Q9ERG0 Pygo2-202ENSMUST00000107413 2911 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
Lima1Q9ERG0 Mirt1-202ENSMUST00000180667 1633 ntTSL 5 BASIC12.36□□□□□ -0.43
Lima1Q9ERG0 Tgfb2-206ENSMUST00000195201 3485 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
Lima1Q9ERG0 AC159314.1-201ENSMUST00000216917 3485 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
Lima1Q9ERG0 Evi5l-208ENSMUST00000176825 3728 ntAPPRIS ALT2 TSL 5 BASIC12.36□□□□□ -0.43
Lima1Q9ERG0 Slc37a2-201ENSMUST00000115068 5943 ntAPPRIS P3 TSL 1 (best) BASIC12.36□□□□□ -0.43
Lima1Q9ERG0 Xpnpep1-209ENSMUST00000183108 4078 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Lima1Q9ERG0 Madd-203ENSMUST00000075269 5756 ntAPPRIS ALT2 TSL 2 BASIC12.35□□□□□ -0.43
Lima1Q9ERG0 Zfp263-201ENSMUST00000023176 3241 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Lima1Q9ERG0 Lrch1-201ENSMUST00000088970 4694 ntAPPRIS P2 TSL 1 (best) BASIC12.35□□□□□ -0.43
Lima1Q9ERG0 Kctd10-202ENSMUST00000102581 3103 ntAPPRIS P3 TSL 1 (best) BASIC12.35□□□□□ -0.43
Lima1Q9ERG0 Slc39a3-205ENSMUST00000168076 3461 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Lima1Q9ERG0 5430419D17Rik-201ENSMUST00000050586 2928 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
Lima1Q9ERG0 Rac1-201ENSMUST00000080537 4159 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Lima1Q9ERG0 Epm2aip1-201ENSMUST00000060711 7149 ntAPPRIS P1 BASIC12.35□□□□□ -0.43
Lima1Q9ERG0 Arhgef2-206ENSMUST00000175779 3065 ntAPPRIS ALT2 TSL 5 BASIC12.35□□□□□ -0.43
Lima1Q9ERG0 Rapgef3-205ENSMUST00000129223 3750 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
Lima1Q9ERG0 Slc44a1-204ENSMUST00000107647 2176 ntTSL 2 BASIC12.35□□□□□ -0.43
Lima1Q9ERG0 Klk6-203ENSMUST00000107968 1394 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Lima1Q9ERG0 Golga4-201ENSMUST00000084820 7583 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Lima1Q9ERG0 Sh3glb2-202ENSMUST00000100215 1749 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
Lima1Q9ERG0 Mlx-203ENSMUST00000107303 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Lima1Q9ERG0 Psd2-205ENSMUST00000176873 4375 ntAPPRIS ALT2 TSL 1 (best) BASIC12.35□□□□□ -0.43
Lima1Q9ERG0 Jup-201ENSMUST00000001592 3205 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Lima1Q9ERG0 Slc44a2-201ENSMUST00000034697 3456 ntAPPRIS P2 TSL 1 (best) BASIC12.35□□□□□ -0.43
Lima1Q9ERG0 Rgs19-204ENSMUST00000108772 779 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
Retrieved 100 of 76,532 protein–RNA pairs in 51.1 ms