Protein–RNA interactions for Protein: Q9ER60

Scn4a, Sodium channel protein type 4 subunit alpha, mousemouse

Predictions only

Length 1,841 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn4aQ9ER60 Olfr435-201ENSMUST00000058118 942 ntAPPRIS P1 BASIC16.62■□□□□ 0.25
Scn4aQ9ER60 Btrc-201ENSMUST00000065601 2978 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
Scn4aQ9ER60 Gstm2-202ENSMUST00000066530 854 ntTSL 3 BASIC16.62■□□□□ 0.25
Scn4aQ9ER60 Rpl9-ps6-201ENSMUST00000078034 691 ntAPPRIS P1 BASIC16.62■□□□□ 0.25
Scn4aQ9ER60 Hax1-201ENSMUST00000079724 1139 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
Scn4aQ9ER60 Usp48-201ENSMUST00000055131 5722 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
Scn4aQ9ER60 1110059E24Rik-201ENSMUST00000038830 1614 ntAPPRIS P2 TSL 1 (best) BASIC16.62■□□□□ 0.25
Scn4aQ9ER60 Caln1-201ENSMUST00000086029 1801 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
Scn4aQ9ER60 Rad9b-202ENSMUST00000117263 2371 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
Scn4aQ9ER60 Acin1-202ENSMUST00000022794 2365 ntAPPRIS ALT2 TSL 5 BASIC16.62■□□□□ 0.25
Scn4aQ9ER60 Mars-201ENSMUST00000037290 2939 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Scn4aQ9ER60 Rpl9-204ENSMUST00000127874 2690 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
Scn4aQ9ER60 Hmox1-201ENSMUST00000005548 1569 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Scn4aQ9ER60 Kcnc4-201ENSMUST00000009617 3667 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Scn4aQ9ER60 Tcim-201ENSMUST00000052622 1805 ntAPPRIS P1 BASIC16.61■□□□□ 0.25
Scn4aQ9ER60 Gm14395-201ENSMUST00000120494 563 ntBASIC16.61■□□□□ 0.25
Scn4aQ9ER60 Gm13281-201ENSMUST00000120871 567 ntBASIC16.61■□□□□ 0.25
Scn4aQ9ER60 Sumo3-203ENSMUST00000124024 776 ntTSL 2 BASIC16.61■□□□□ 0.25
Scn4aQ9ER60 Gm17825-201ENSMUST00000206836 794 ntBASIC16.61■□□□□ 0.25
Scn4aQ9ER60 Gm10371-202ENSMUST00000228010 1081 ntBASIC16.61■□□□□ 0.25
Scn4aQ9ER60 Iah1-201ENSMUST00000076813 1141 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Scn4aQ9ER60 Slc7a6-201ENSMUST00000034378 3750 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Scn4aQ9ER60 Midn-202ENSMUST00000099492 3597 ntAPPRIS ALT2 TSL 5 BASIC16.61■□□□□ 0.25
Scn4aQ9ER60 Zfp784-201ENSMUST00000062428 2153 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Scn4aQ9ER60 Inppl1-202ENSMUST00000165052 4730 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Scn4aQ9ER60 Prr13-205ENSMUST00000171245 1353 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Scn4aQ9ER60 AC154354.1-203ENSMUST00000225565 1364 ntBASIC16.61■□□□□ 0.25
Scn4aQ9ER60 Klf3-201ENSMUST00000165536 5221 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Scn4aQ9ER60 Gtf3c5-201ENSMUST00000028157 2739 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
Scn4aQ9ER60 Ep300-201ENSMUST00000068387 9566 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Scn4aQ9ER60 Smc5-202ENSMUST00000223934 3448 ntAPPRIS P2 BASIC16.61■□□□□ 0.25
Scn4aQ9ER60 Jade1-203ENSMUST00000168086 4790 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
Scn4aQ9ER60 Cdk2-202ENSMUST00000026416 2406 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
Scn4aQ9ER60 Fam3a-204ENSMUST00000114141 1243 ntTSL 5 BASIC16.61■□□□□ 0.25
Scn4aQ9ER60 Gm14497-201ENSMUST00000119537 580 ntBASIC16.61■□□□□ 0.25
Scn4aQ9ER60 Gm15658-201ENSMUST00000148293 574 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
Scn4aQ9ER60 Gm26626-201ENSMUST00000180989 713 ntTSL 2 BASIC16.61■□□□□ 0.25
Scn4aQ9ER60 Gm26716-201ENSMUST00000181227 415 ntTSL 5 BASIC16.61■□□□□ 0.25
Scn4aQ9ER60 Gm37365-201ENSMUST00000193109 409 ntBASIC16.61■□□□□ 0.25
Scn4aQ9ER60 Gm7525-201ENSMUST00000219425 454 ntBASIC16.61■□□□□ 0.25
Scn4aQ9ER60 Gm32872-201ENSMUST00000220037 205 ntTSL 3 BASIC16.61■□□□□ 0.25
Scn4aQ9ER60 5830428M24Rik-201ENSMUST00000221805 825 ntTSL 2 BASIC16.61■□□□□ 0.25
Scn4aQ9ER60 Olfr1428-201ENSMUST00000087824 945 ntAPPRIS P1 BASIC16.61■□□□□ 0.25
Scn4aQ9ER60 P2rx1-202ENSMUST00000092938 1119 ntTSL 5 BASIC16.61■□□□□ 0.25
Scn4aQ9ER60 St6galnac2-201ENSMUST00000079545 3643 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Scn4aQ9ER60 Gm10750-201ENSMUST00000099266 1506 ntAPPRIS P1 BASIC16.61■□□□□ 0.25
Scn4aQ9ER60 Cspg5-201ENSMUST00000035058 3870 ntAPPRIS P2 TSL 1 (best) BASIC16.61■□□□□ 0.25
Scn4aQ9ER60 Dhcr24-201ENSMUST00000047973 4028 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Scn4aQ9ER60 Gm18782-201ENSMUST00000209023 1399 ntBASIC16.6■□□□□ 0.25
Scn4aQ9ER60 Mxd4-201ENSMUST00000042701 3872 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Scn4aQ9ER60 Zfp872-201ENSMUST00000091508 1395 ntTSL 5 BASIC16.6■□□□□ 0.25
Scn4aQ9ER60 4933416C03Rik-201ENSMUST00000099261 2254 ntAPPRIS P1 BASIC16.6■□□□□ 0.25
Scn4aQ9ER60 Pitpna-206ENSMUST00000179521 3727 ntAPPRIS ALT1 TSL 5 BASIC16.6■□□□□ 0.25
Scn4aQ9ER60 Lhfpl1-201ENSMUST00000040084 1830 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Scn4aQ9ER60 Ighv5-15-201ENSMUST00000103457 350 ntAPPRIS ALT2 BASIC16.6■□□□□ 0.25
Scn4aQ9ER60 Gm25562-201ENSMUST00000104608 133 ntBASIC16.6■□□□□ 0.25
Scn4aQ9ER60 Gm14760-201ENSMUST00000121831 999 ntBASIC16.6■□□□□ 0.25
Scn4aQ9ER60 Gm11981-201ENSMUST00000139769 664 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
Scn4aQ9ER60 4930524O07Rik-202ENSMUST00000162334 293 ntTSL 2 BASIC16.6■□□□□ 0.25
Scn4aQ9ER60 4933417D19Rik-201ENSMUST00000181432 1229 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
Scn4aQ9ER60 Gm26957-201ENSMUST00000182645 977 ntBASIC16.6■□□□□ 0.25
Scn4aQ9ER60 Tmprss11c-202ENSMUST00000196462 1257 ntAPPRIS ALT2 TSL 5 BASIC16.6■□□□□ 0.25
Scn4aQ9ER60 Gm42953-201ENSMUST00000199363 581 ntTSL 3 BASIC16.6■□□□□ 0.25
Scn4aQ9ER60 Gm7940-201ENSMUST00000218195 769 ntBASIC16.6■□□□□ 0.25
Scn4aQ9ER60 Gm7735-201ENSMUST00000089098 159 ntAPPRIS P1 BASIC16.6■□□□□ 0.25
Scn4aQ9ER60 Gm42970-201ENSMUST00000196407 1352 ntBASIC16.6■□□□□ 0.25
Scn4aQ9ER60 Cadps2-205ENSMUST00000115358 4848 ntAPPRIS ALT2 TSL 5 BASIC16.6■□□□□ 0.25
Scn4aQ9ER60 Hars2-206ENSMUST00000152954 3336 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Scn4aQ9ER60 Rcc2-202ENSMUST00000071169 3999 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Scn4aQ9ER60 Papd5-203ENSMUST00000119033 4624 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Scn4aQ9ER60 Dmkn-205ENSMUST00000165887 2063 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
Scn4aQ9ER60 Olfr582-202ENSMUST00000210119 1787 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
Scn4aQ9ER60 Arhgef2-223ENSMUST00000176804 3086 ntAPPRIS ALT2 TSL 5 BASIC16.6■□□□□ 0.25
Scn4aQ9ER60 Ptpn2-202ENSMUST00000120934 1497 ntAPPRIS ALT2 TSL 5 BASIC16.6■□□□□ 0.25
Scn4aQ9ER60 Apol9a-201ENSMUST00000081776 1475 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Scn4aQ9ER60 Deup1-201ENSMUST00000045513 2583 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
Scn4aQ9ER60 Copb2-201ENSMUST00000035033 3050 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Scn4aQ9ER60 Erg-208ENSMUST00000176345 1222 ntTSL 5 BASIC16.59■□□□□ 0.25
Scn4aQ9ER60 Gm43777-201ENSMUST00000197269 376 ntTSL 3 BASIC16.59■□□□□ 0.25
Scn4aQ9ER60 Gm43726-201ENSMUST00000199110 775 ntBASIC16.59■□□□□ 0.25
Scn4aQ9ER60 Lgals1-201ENSMUST00000089377 800 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Scn4aQ9ER60 Sohlh2-201ENSMUST00000029369 2364 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Scn4aQ9ER60 6030458C11Rik-202ENSMUST00000227299 3206 ntBASIC16.59■□□□□ 0.25
Scn4aQ9ER60 Zbtb43-203ENSMUST00000113156 1828 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
Scn4aQ9ER60 Gm18642-201ENSMUST00000206642 1400 ntBASIC16.59■□□□□ 0.25
Scn4aQ9ER60 AC129931.1-201ENSMUST00000228865 1861 ntBASIC16.59■□□□□ 0.25
Scn4aQ9ER60 Rbms3-201ENSMUST00000044901 1983 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
Scn4aQ9ER60 Eif4e3-201ENSMUST00000032151 2515 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Scn4aQ9ER60 Mat2b-202ENSMUST00000101347 2053 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
Scn4aQ9ER60 Nfatc3-201ENSMUST00000109308 5984 ntAPPRIS P2 TSL 1 (best) BASIC16.59■□□□□ 0.25
Scn4aQ9ER60 Tnnt3-213ENSMUST00000105952 1040 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
Scn4aQ9ER60 Tnnt3-215ENSMUST00000105954 1052 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
Scn4aQ9ER60 Tnnt3-216ENSMUST00000105955 1028 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
Scn4aQ9ER60 Tnnt3-218ENSMUST00000105958 1050 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
Scn4aQ9ER60 Itpa-ps1-201ENSMUST00000117207 597 ntBASIC16.59■□□□□ 0.25
Scn4aQ9ER60 Gm12389-201ENSMUST00000117696 418 ntBASIC16.59■□□□□ 0.25
Scn4aQ9ER60 Gm11475-201ENSMUST00000118482 476 ntBASIC16.59■□□□□ 0.25
Scn4aQ9ER60 Gm8019-201ENSMUST00000119317 587 ntBASIC16.59■□□□□ 0.25
Scn4aQ9ER60 Gm5395-201ENSMUST00000121650 915 ntBASIC16.59■□□□□ 0.25
Scn4aQ9ER60 AA623943-201ENSMUST00000121794 354 ntBASIC16.59■□□□□ 0.25
Retrieved 100 of 76,532 protein–RNA pairs in 61.7 ms