Protein–RNA interactions for Protein: Q9CU62

Smc1a, Structural maintenance of chromosomes protein 1A, mousemouse

Known RBP Predictions only

Length 1,233 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smc1aQ9CU62 Snrk-203ENSMUST00000120173 4758 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Smc1aQ9CU62 Sept10-201ENSMUST00000165971 2532 ntAPPRIS P2 TSL 1 (best) BASIC14.06□□□□□ -0.16
Smc1aQ9CU62 Gtf2i-201ENSMUST00000059042 4455 ntAPPRIS P4 TSL 1 (best) BASIC14.06□□□□□ -0.16
Smc1aQ9CU62 Strip2-205ENSMUST00000151738 5281 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
Smc1aQ9CU62 Gm43650-201ENSMUST00000197337 1382 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
Smc1aQ9CU62 Gm30214-201ENSMUST00000199271 1383 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
Smc1aQ9CU62 Pdcd6-203ENSMUST00000222759 1376 ntAPPRIS ALT1 TSL 2 BASIC14.06□□□□□ -0.16
Smc1aQ9CU62 Slc6a6-201ENSMUST00000032185 6186 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Smc1aQ9CU62 Ccne2-201ENSMUST00000029866 3006 ntAPPRIS ALT1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Smc1aQ9CU62 Islr-201ENSMUST00000041477 2223 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Smc1aQ9CU62 Six4-202ENSMUST00000175693 6817 ntAPPRIS ALT2 TSL 5 BASIC14.06□□□□□ -0.16
Smc1aQ9CU62 Rtn4rl1-201ENSMUST00000102514 3525 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Smc1aQ9CU62 Sf1-208ENSMUST00000131252 4353 ntAPPRIS P4 TSL 1 (best) BASIC14.06□□□□□ -0.16
Smc1aQ9CU62 Tmed9-203ENSMUST00000224741 1450 ntBASIC14.06□□□□□ -0.16
Smc1aQ9CU62 Gal3st4-203ENSMUST00000161647 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
Smc1aQ9CU62 AC166574.4-201ENSMUST00000227165 1937 ntBASIC14.05□□□□□ -0.16
Smc1aQ9CU62 Rbpj-207ENSMUST00000201883 4961 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
Smc1aQ9CU62 Mzf1-205ENSMUST00000182515 3340 ntAPPRIS P2 TSL 1 (best) BASIC14.05□□□□□ -0.16
Smc1aQ9CU62 Noxa1-202ENSMUST00000114373 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
Smc1aQ9CU62 Alppl2-202ENSMUST00000188310 2016 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Smc1aQ9CU62 Prom2-201ENSMUST00000028855 4796 ntAPPRIS P3 TSL 1 (best) BASIC14.05□□□□□ -0.16
Smc1aQ9CU62 Smpd2-201ENSMUST00000019965 1602 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Smc1aQ9CU62 Otop1-201ENSMUST00000063136 3106 ntAPPRIS ALT2 TSL 5 BASIC14.05□□□□□ -0.16
Smc1aQ9CU62 Ints1-210ENSMUST00000200393 7070 ntAPPRIS P2 TSL 1 (best) BASIC14.05□□□□□ -0.16
Smc1aQ9CU62 Creb3l2-201ENSMUST00000041093 7082 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Smc1aQ9CU62 Zfp41-201ENSMUST00000054555 3736 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Smc1aQ9CU62 Gm10097-201ENSMUST00000180100 2784 ntAPPRIS P1 BASIC14.05□□□□□ -0.16
Smc1aQ9CU62 Grsf1-202ENSMUST00000113234 2286 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
Smc1aQ9CU62 Leprot-202ENSMUST00000106927 1754 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
Smc1aQ9CU62 Cd33-202ENSMUST00000039861 1791 ntAPPRIS P3 TSL 1 (best) BASIC14.05□□□□□ -0.16
Smc1aQ9CU62 Cdkn1a-202ENSMUST00000119901 748 ntAPPRIS P1 TSL 2 BASIC14.05□□□□□ -0.16
Smc1aQ9CU62 Gm13123-201ENSMUST00000122173 492 ntBASIC14.05□□□□□ -0.16
Smc1aQ9CU62 Gm12167-201ENSMUST00000148132 578 ntTSL 2 BASIC14.05□□□□□ -0.16
Smc1aQ9CU62 Gm26083-201ENSMUST00000157904 193 ntBASIC14.05□□□□□ -0.16
Smc1aQ9CU62 Gm28511-201ENSMUST00000191594 450 ntTSL 3 BASIC14.05□□□□□ -0.16
Smc1aQ9CU62 Gm36937-201ENSMUST00000192957 429 ntTSL 3 BASIC14.05□□□□□ -0.16
Smc1aQ9CU62 St6galnac4-204ENSMUST00000179989 2826 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Smc1aQ9CU62 Dlx5-202ENSMUST00000142635 1324 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
Smc1aQ9CU62 Ccrl2-203ENSMUST00000199839 1864 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Smc1aQ9CU62 Cdc37l1-208ENSMUST00000225310 4079 ntAPPRIS ALT2 BASIC14.05□□□□□ -0.16
Smc1aQ9CU62 Rnf113a2-201ENSMUST00000183146 1383 ntAPPRIS P1 BASIC14.05□□□□□ -0.16
Smc1aQ9CU62 Dnajc13-201ENSMUST00000035170 8012 ntAPPRIS P1 TSL 5 BASIC14.05□□□□□ -0.16
Smc1aQ9CU62 Plxna1-201ENSMUST00000049845 5810 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Smc1aQ9CU62 Mos-201ENSMUST00000105158 1449 ntAPPRIS P1 BASIC14.05□□□□□ -0.16
Smc1aQ9CU62 G6pc3-201ENSMUST00000070334 1404 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Smc1aQ9CU62 Myoc-201ENSMUST00000028020 2074 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Smc1aQ9CU62 Gm20605-201ENSMUST00000177545 4464 ntAPPRIS P1 TSL 2 BASIC14.05□□□□□ -0.16
Smc1aQ9CU62 Ldb3-201ENSMUST00000022327 5119 ntAPPRIS P4 TSL 1 (best) BASIC14.05□□□□□ -0.16
Smc1aQ9CU62 7420426K07Rik-201ENSMUST00000098460 1504 ntAPPRIS P1 BASIC14.05□□□□□ -0.16
Smc1aQ9CU62 Apbb2-215ENSMUST00000162349 3362 ntAPPRIS P3 TSL 5 BASIC14.05□□□□□ -0.16
Smc1aQ9CU62 Apbb2-201ENSMUST00000087256 3362 ntAPPRIS ALT1 TSL 5 BASIC14.05□□□□□ -0.16
Smc1aQ9CU62 Ildr1-203ENSMUST00000119464 2878 ntAPPRIS P3 TSL 1 (best) BASIC14.05□□□□□ -0.16
Smc1aQ9CU62 Nxf1-211ENSMUST00000184970 5591 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Smc1aQ9CU62 N6amt1-203ENSMUST00000118310 1700 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Smc1aQ9CU62 Gm33543-203ENSMUST00000211096 1722 ntAPPRIS P5 TSL 5 BASIC14.04□□□□□ -0.16
Smc1aQ9CU62 AC164426.2-201ENSMUST00000225993 2492 ntBASIC14.04□□□□□ -0.16
Smc1aQ9CU62 Usp18-201ENSMUST00000032198 1771 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Smc1aQ9CU62 Wnt16-202ENSMUST00000128245 3285 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Smc1aQ9CU62 Olfr707-203ENSMUST00000210644 1817 ntAPPRIS P1 TSL 3 BASIC14.04□□□□□ -0.16
Smc1aQ9CU62 Syvn1-204ENSMUST00000138532 3464 ntAPPRIS P2 TSL 1 (best) BASIC14.04□□□□□ -0.16
Smc1aQ9CU62 Zfp12-203ENSMUST00000077485 4294 ntAPPRIS P3 TSL 1 (best) BASIC14.04□□□□□ -0.16
Smc1aQ9CU62 Gm45253-201ENSMUST00000210694 2076 ntTSL 5 BASIC14.04□□□□□ -0.16
Smc1aQ9CU62 Phlda2-201ENSMUST00000010904 757 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Smc1aQ9CU62 Cntf-201ENSMUST00000112933 1073 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Smc1aQ9CU62 Fam71f2-201ENSMUST00000115286 1180 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Smc1aQ9CU62 Emd-204ENSMUST00000119197 768 ntTSL 3 BASIC14.04□□□□□ -0.16
Smc1aQ9CU62 Gm2231-201ENSMUST00000125661 612 ntBASIC14.04□□□□□ -0.16
Smc1aQ9CU62 Gm14508-201ENSMUST00000127049 901 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Smc1aQ9CU62 Gm18827-201ENSMUST00000188341 790 ntBASIC14.04□□□□□ -0.16
Smc1aQ9CU62 Hax1-207ENSMUST00000198782 855 ntAPPRIS ALT2 TSL 5 BASIC14.04□□□□□ -0.16
Smc1aQ9CU62 Fxyd1-217ENSMUST00000206860 594 ntAPPRIS P1 TSL 5 BASIC14.04□□□□□ -0.16
Smc1aQ9CU62 AC159747.1-201ENSMUST00000219903 265 ntBASIC14.04□□□□□ -0.16
Smc1aQ9CU62 Leap2-201ENSMUST00000036045 531 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Smc1aQ9CU62 Mrap-201ENSMUST00000038197 1001 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Smc1aQ9CU62 Olfr1346-201ENSMUST00000056144 1051 ntAPPRIS P1 BASIC14.04□□□□□ -0.16
Smc1aQ9CU62 1700007G11Rik-201ENSMUST00000080333 861 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Smc1aQ9CU62 Gm6203-201ENSMUST00000209575 1342 ntBASIC14.04□□□□□ -0.16
Smc1aQ9CU62 Zfp541-202ENSMUST00000209369 4879 ntAPPRIS P2 TSL 5 BASIC14.04□□□□□ -0.16
Smc1aQ9CU62 Vill-203ENSMUST00000126251 1411 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Smc1aQ9CU62 Gm45338-207ENSMUST00000211499 1405 ntTSL 5 BASIC14.04□□□□□ -0.16
Smc1aQ9CU62 Opcml-201ENSMUST00000073822 2378 ntAPPRIS P1 TSL 5 BASIC14.04□□□□□ -0.16
Smc1aQ9CU62 Bicra-201ENSMUST00000094821 5360 ntAPPRIS P1 TSL 5 BASIC14.04□□□□□ -0.16
Smc1aQ9CU62 Sstr5-202ENSMUST00000165183 2581 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Smc1aQ9CU62 Cacna1g-205ENSMUST00000107786 7984 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
Smc1aQ9CU62 Rnps1-202ENSMUST00000115371 1617 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Smc1aQ9CU62 Gm32479-201ENSMUST00000204226 2739 ntTSL 2 BASIC14.04□□□□□ -0.16
Smc1aQ9CU62 5830462O15Rik-201ENSMUST00000214603 1655 ntBASIC14.04□□□□□ -0.16
Smc1aQ9CU62 Kdm2a-201ENSMUST00000047898 8578 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Smc1aQ9CU62 Rabif-201ENSMUST00000047978 2861 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Smc1aQ9CU62 Mogat2-201ENSMUST00000064231 1780 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Smc1aQ9CU62 Mlx-202ENSMUST00000107302 1826 ntAPPRIS ALT1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Smc1aQ9CU62 Adamts3-204ENSMUST00000198151 1833 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Smc1aQ9CU62 Slc25a42-201ENSMUST00000063788 3081 ntAPPRIS P1 TSL 5 BASIC14.04□□□□□ -0.16
Smc1aQ9CU62 Fancc-214ENSMUST00000161977 3111 ntAPPRIS P3 TSL 1 (best) BASIC14.04□□□□□ -0.16
Smc1aQ9CU62 Ccdc187-201ENSMUST00000057224 3148 ntAPPRIS P2 TSL 1 (best) BASIC14.04□□□□□ -0.16
Smc1aQ9CU62 Zbtb42-203ENSMUST00000174780 3160 ntTSL 2 BASIC14.04□□□□□ -0.16
Smc1aQ9CU62 Flrt1-201ENSMUST00000113383 5859 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Smc1aQ9CU62 Gm8108-202ENSMUST00000170207 1961 ntAPPRIS P5 TSL 5 BASIC14.03□□□□□ -0.16
Smc1aQ9CU62 Atp6v1h-201ENSMUST00000044369 2049 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Smc1aQ9CU62 Pxn-202ENSMUST00000086523 2667 ntAPPRIS ALT2 TSL 2 BASIC14.03□□□□□ -0.16
Retrieved 100 of 76,532 protein–RNA pairs in 33.4 ms