Protein–RNA interactions for Protein: Q8CFK2

Brf1, Transcription factor IIIB 90 kDa subunit, mousemouse

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Brf1Q8CFK2 Gm19221-201ENSMUST00000221827 1477 ntBASIC15.12■□□□□ 0.01
Brf1Q8CFK2 Csrnp3-202ENSMUST00000112394 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
Brf1Q8CFK2 Gm43463-201ENSMUST00000195967 1803 ntBASIC15.12■□□□□ 0.01
Brf1Q8CFK2 Armcx1-203ENSMUST00000113197 2179 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Brf1Q8CFK2 Gm32479-201ENSMUST00000204226 2739 ntTSL 2 BASIC15.12■□□□□ 0.01
Brf1Q8CFK2 Gm26685-201ENSMUST00000181831 2023 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Brf1Q8CFK2 Rita1-207ENSMUST00000177800 1668 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
Brf1Q8CFK2 Dcaf7-201ENSMUST00000058438 5750 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Brf1Q8CFK2 Pqlc2-202ENSMUST00000105801 2756 ntAPPRIS ALT2 TSL 2 BASIC15.12■□□□□ 0.01
Brf1Q8CFK2 Fam198a-202ENSMUST00000213773 2088 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Brf1Q8CFK2 Dync1li1-201ENSMUST00000047404 2601 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Brf1Q8CFK2 Crybg1-202ENSMUST00000200401 7525 ntAPPRIS ALT2 TSL 5 BASIC15.12■□□□□ 0.01
Brf1Q8CFK2 Armcx1-202ENSMUST00000051256 2253 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Brf1Q8CFK2 Acin1-221ENSMUST00000150371 2494 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Brf1Q8CFK2 Scyl2-201ENSMUST00000092227 3566 ntAPPRIS ALT1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Brf1Q8CFK2 Trpc2-201ENSMUST00000124189 2874 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Brf1Q8CFK2 Tsku-207ENSMUST00000206414 2310 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Brf1Q8CFK2 Mid1-215ENSMUST00000171433 2546 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
Brf1Q8CFK2 Chpf2-201ENSMUST00000088295 5371 ntAPPRIS P1 TSL 2 BASIC15.11■□□□□ 0.01
Brf1Q8CFK2 Acadsb-201ENSMUST00000015829 6081 ntAPPRIS P2 TSL 1 (best) BASIC15.11■□□□□ 0.01
Brf1Q8CFK2 Osbpl7-201ENSMUST00000090020 3771 ntAPPRIS P2 TSL 1 (best) BASIC15.11■□□□□ 0.01
Brf1Q8CFK2 Ext1-201ENSMUST00000077273 7663 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Brf1Q8CFK2 Gm10434-201ENSMUST00000101158 471 ntBASIC15.11■□□□□ 0.01
Brf1Q8CFK2 Spsb1-202ENSMUST00000105684 1002 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Brf1Q8CFK2 Gm5940-201ENSMUST00000117582 1068 ntBASIC15.11■□□□□ 0.01
Brf1Q8CFK2 Gm4986-201ENSMUST00000119731 549 ntBASIC15.11■□□□□ 0.01
Brf1Q8CFK2 Gm13562-201ENSMUST00000125198 797 ntTSL 2 BASIC15.11■□□□□ 0.01
Brf1Q8CFK2 Tmem52-204ENSMUST00000178188 908 ntAPPRIS ALT2 TSL 2 BASIC15.11■□□□□ 0.01
Brf1Q8CFK2 Tmem52-205ENSMUST00000178238 968 ntAPPRIS P4 TSL 1 (best) BASIC15.11■□□□□ 0.01
Brf1Q8CFK2 Gm9630-201ENSMUST00000178304 885 ntBASIC15.11■□□□□ 0.01
Brf1Q8CFK2 Gm2546-201ENSMUST00000182630 991 ntBASIC15.11■□□□□ 0.01
Brf1Q8CFK2 Gm4691-202ENSMUST00000182989 885 ntTSL 5 BASIC15.11■□□□□ 0.01
Brf1Q8CFK2 Gm7399-201ENSMUST00000032395 858 ntBASIC15.11■□□□□ 0.01
Brf1Q8CFK2 Asphd1-201ENSMUST00000052937 730 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
Brf1Q8CFK2 Elf1-201ENSMUST00000040131 4235 ntAPPRIS P2 TSL 1 (best) BASIC15.11■□□□□ 0.01
Brf1Q8CFK2 Prss30-201ENSMUST00000024936 1470 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Brf1Q8CFK2 Cux2-202ENSMUST00000111752 8784 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Brf1Q8CFK2 Strada-201ENSMUST00000007444 2099 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Brf1Q8CFK2 1520401A03Rik-205ENSMUST00000201734 2660 ntAPPRIS P5 TSL 5 BASIC15.11■□□□□ 0.01
Brf1Q8CFK2 Sp4-203ENSMUST00000222314 2677 ntAPPRIS P2 TSL 1 (best) BASIC15.11■□□□□ 0.01
Brf1Q8CFK2 Sorcs1-206ENSMUST00000209783 3489 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Brf1Q8CFK2 Tecpr1-201ENSMUST00000085701 5106 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Brf1Q8CFK2 Sp7-201ENSMUST00000078508 2906 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Brf1Q8CFK2 Acadl-201ENSMUST00000027153 1916 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Brf1Q8CFK2 Rbm39-217ENSMUST00000146297 2580 ntAPPRIS ALT1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Brf1Q8CFK2 Cluap1-201ENSMUST00000040881 1779 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Brf1Q8CFK2 Nisch-213ENSMUST00000168206 4990 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Brf1Q8CFK2 Cdv3-203ENSMUST00000116517 3741 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Brf1Q8CFK2 Slc5a11-207ENSMUST00000167299 2022 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
Brf1Q8CFK2 Ggnbp1-203ENSMUST00000133257 5012 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
Brf1Q8CFK2 Gm5780-201ENSMUST00000217774 1834 ntBASIC15.1■□□□□ 0.01
Brf1Q8CFK2 C5ar1-201ENSMUST00000050770 2481 ntAPPRIS P1 TSL 3 BASIC15.1■□□□□ 0.01
Brf1Q8CFK2 Nrg1-201ENSMUST00000073884 2452 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Brf1Q8CFK2 Mettl8-202ENSMUST00000100037 2254 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
Brf1Q8CFK2 Hps3-201ENSMUST00000012580 4016 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Brf1Q8CFK2 Ppp6r3-202ENSMUST00000113997 4952 ntAPPRIS ALT1 TSL 5 BASIC15.1■□□□□ 0.01
Brf1Q8CFK2 Ppm1g-201ENSMUST00000031032 2307 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Brf1Q8CFK2 BC055324-202ENSMUST00000097493 3217 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
Brf1Q8CFK2 Gm44929-202ENSMUST00000209134 1653 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Brf1Q8CFK2 Ptn-202ENSMUST00000201321 2558 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Brf1Q8CFK2 Hnf1b-202ENSMUST00000108113 2376 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Brf1Q8CFK2 Gm37437-201ENSMUST00000194451 1937 ntBASIC15.1■□□□□ 0.01
Brf1Q8CFK2 Gm15370-201ENSMUST00000117158 253 ntBASIC15.1■□□□□ 0.01
Brf1Q8CFK2 Gm12314-201ENSMUST00000118104 538 ntBASIC15.1■□□□□ 0.01
Brf1Q8CFK2 Gm12058-201ENSMUST00000118614 437 ntBASIC15.1■□□□□ 0.01
Brf1Q8CFK2 Nudt17-202ENSMUST00000171249 1110 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Brf1Q8CFK2 Gm27501-201ENSMUST00000183599 107 ntBASIC15.1■□□□□ 0.01
Brf1Q8CFK2 Abhd14b-202ENSMUST00000185347 1200 ntAPPRIS P1 TSL 3 BASIC15.1■□□□□ 0.01
Brf1Q8CFK2 Gm8176-201ENSMUST00000191297 1099 ntBASIC15.1■□□□□ 0.01
Brf1Q8CFK2 Gm44974-201ENSMUST00000206387 1279 ntBASIC15.1■□□□□ 0.01
Brf1Q8CFK2 Gm6007-201ENSMUST00000208170 823 ntBASIC15.1■□□□□ 0.01
Brf1Q8CFK2 Gm19963-201ENSMUST00000208413 1255 ntBASIC15.1■□□□□ 0.01
Brf1Q8CFK2 Tpd52l1-205ENSMUST00000215515 857 ntTSL 2 BASIC15.1■□□□□ 0.01
Brf1Q8CFK2 Gm7046-201ENSMUST00000221351 977 ntBASIC15.1■□□□□ 0.01
Brf1Q8CFK2 AC166095.1-201ENSMUST00000223731 1241 ntBASIC15.1■□□□□ 0.01
Brf1Q8CFK2 Olfr366-201ENSMUST00000091001 930 ntAPPRIS P1 BASIC15.1■□□□□ 0.01
Brf1Q8CFK2 Gm6502-202ENSMUST00000097478 1218 ntTSL 5 BASIC15.1■□□□□ 0.01
Brf1Q8CFK2 5430419D17Rik-201ENSMUST00000050586 2928 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Brf1Q8CFK2 Agrn-201ENSMUST00000071248 4831 ntTSL 5 BASIC15.1■□□□□ 0.01
Brf1Q8CFK2 Drg2-201ENSMUST00000018568 1788 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Brf1Q8CFK2 Cdc37l1-207ENSMUST00000225210 4163 ntAPPRIS ALT2 BASIC15.1■□□□□ 0.01
Brf1Q8CFK2 2410131K14Rik-201ENSMUST00000049138 5649 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Brf1Q8CFK2 Tacr2-201ENSMUST00000020278 2258 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Brf1Q8CFK2 Gm4735-201ENSMUST00000138679 1302 ntBASIC15.1■□□□□ 0.01
Brf1Q8CFK2 Gm5855-201ENSMUST00000200240 1305 ntBASIC15.1■□□□□ 0.01
Brf1Q8CFK2 Gm4366-201ENSMUST00000201488 1342 ntBASIC15.1■□□□□ 0.01
Brf1Q8CFK2 Spryd7-201ENSMUST00000022497 4002 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Brf1Q8CFK2 Chchd3-202ENSMUST00000115091 1363 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Brf1Q8CFK2 Pex3-201ENSMUST00000019945 2129 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Brf1Q8CFK2 Gimap3-202ENSMUST00000204036 2145 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Brf1Q8CFK2 D630033O11Rik-204ENSMUST00000210588 1358 ntTSL 5 BASIC15.1■□□□□ 0.01
Brf1Q8CFK2 Ankrd17-201ENSMUST00000014421 10458 ntAPPRIS P4 TSL 5 BASIC15.1■□□□□ 0.01
Brf1Q8CFK2 Fbxo28-201ENSMUST00000051431 4925 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Brf1Q8CFK2 Treh-202ENSMUST00000071219 1927 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Brf1Q8CFK2 Zmym1-202ENSMUST00000106099 2982 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
Brf1Q8CFK2 Eef1akmt3-201ENSMUST00000116231 2719 ntAPPRIS P1 TSL 5 BASIC15.09■□□□□ 0.01
Brf1Q8CFK2 Ccng1-201ENSMUST00000020576 3512 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Brf1Q8CFK2 Sfmbt1-206ENSMUST00000228006 3299 ntAPPRIS P1 BASIC15.09■□□□□ 0.01
Brf1Q8CFK2 4933427G23Rik-201ENSMUST00000122963 2515 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Brf1Q8CFK2 Gm5884-201ENSMUST00000036712 1479 ntBASIC15.09■□□□□ 0.01
Retrieved 100 of 76,532 protein–RNA pairs in 28.9 ms