Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 AC126262.1-201ENSMUST00000221802 1904 ntBASIC17.13■□□□□ 0.33
Usp40Q8BWR4 Emc7-201ENSMUST00000069747 5826 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Usp40Q8BWR4 Tdrd6-203ENSMUST00000168073 7062 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
Usp40Q8BWR4 Rbbp5-207ENSMUST00000190997 2856 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
Usp40Q8BWR4 Gm26593-201ENSMUST00000181848 1970 ntTSL 5 BASIC17.13■□□□□ 0.33
Usp40Q8BWR4 Polrmt-202ENSMUST00000159016 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
Usp40Q8BWR4 Aacs-201ENSMUST00000031445 3239 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Usp40Q8BWR4 Phf13-201ENSMUST00000055688 3205 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Usp40Q8BWR4 Rbm4-206ENSMUST00000180248 2610 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Usp40Q8BWR4 Gm10767-202ENSMUST00000168767 2067 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Usp40Q8BWR4 Rap1gap2-202ENSMUST00000102521 6565 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
Usp40Q8BWR4 Kcnk13-201ENSMUST00000049788 3078 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Usp40Q8BWR4 Dnmt3l-202ENSMUST00000123940 1452 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Usp40Q8BWR4 Dnajb12-203ENSMUST00000142819 1495 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
Usp40Q8BWR4 Henmt1-205ENSMUST00000196533 1491 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Usp40Q8BWR4 Lcor-201ENSMUST00000067795 4810 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Usp40Q8BWR4 Slc8a2-201ENSMUST00000168693 4171 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
Usp40Q8BWR4 Mcm8-201ENSMUST00000028831 3179 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
Usp40Q8BWR4 Chmp5-201ENSMUST00000030128 1519 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Usp40Q8BWR4 Mtss1-201ENSMUST00000080371 4938 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Usp40Q8BWR4 Mfsd13b-201ENSMUST00000033166 1883 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
Usp40Q8BWR4 Mau2-201ENSMUST00000050561 5369 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
Usp40Q8BWR4 Picalm-213ENSMUST00000208742 3361 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
Usp40Q8BWR4 Azi2-201ENSMUST00000044454 3396 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Usp40Q8BWR4 Ighg2c-201ENSMUST00000103416 1214 ntAPPRIS P5 BASIC17.12■□□□□ 0.33
Usp40Q8BWR4 Pla2g1b-202ENSMUST00000112071 361 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Usp40Q8BWR4 Tmem74bos-201ENSMUST00000137422 390 ntTSL 3 BASIC17.12■□□□□ 0.33
Usp40Q8BWR4 Gm28982-201ENSMUST00000186895 512 ntTSL 3 BASIC17.12■□□□□ 0.33
Usp40Q8BWR4 Gm43701-201ENSMUST00000202047 391 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Usp40Q8BWR4 Gm35368-201ENSMUST00000209554 1244 ntTSL 5 BASIC17.12■□□□□ 0.33
Usp40Q8BWR4 Mob2-203ENSMUST00000209732 977 ntAPPRIS ALT2 TSL 3 BASIC17.12■□□□□ 0.33
Usp40Q8BWR4 Sacs-202ENSMUST00000119509 3468 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
Usp40Q8BWR4 Zfp957-202ENSMUST00000161649 2751 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
Usp40Q8BWR4 Gm5525-201ENSMUST00000190438 1312 ntBASIC17.12■□□□□ 0.33
Usp40Q8BWR4 Pex3-201ENSMUST00000019945 2129 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Usp40Q8BWR4 Zfp346-201ENSMUST00000021937 3333 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
Usp40Q8BWR4 Uspl1-205ENSMUST00000121416 3792 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
Usp40Q8BWR4 Pphln1-202ENSMUST00000068457 3816 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Usp40Q8BWR4 Rorc-204ENSMUST00000200009 1543 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Usp40Q8BWR4 Ndel1-202ENSMUST00000101017 1646 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Usp40Q8BWR4 Igfals-201ENSMUST00000050714 2111 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Usp40Q8BWR4 AC241621.2-201ENSMUST00000223991 2151 ntBASIC17.11■□□□□ 0.33
Usp40Q8BWR4 Gm22133-201ENSMUST00000102082 109 ntBASIC17.11■□□□□ 0.33
Usp40Q8BWR4 5730416F02Rik-201ENSMUST00000120648 812 ntBASIC17.11■□□□□ 0.33
Usp40Q8BWR4 Gm15852-201ENSMUST00000159701 915 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Usp40Q8BWR4 Gm20537-202ENSMUST00000173131 889 ntAPPRIS P5 TSL 5 BASIC17.11■□□□□ 0.33
Usp40Q8BWR4 H2-Bl-202ENSMUST00000183560 316 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Usp40Q8BWR4 Gm9555-201ENSMUST00000200908 583 ntBASIC17.11■□□□□ 0.33
Usp40Q8BWR4 Gm44968-201ENSMUST00000207652 1171 ntTSL 5 BASIC17.11■□□□□ 0.33
Usp40Q8BWR4 Cotl1-203ENSMUST00000211873 826 ntTSL 5 BASIC17.11■□□□□ 0.33
Usp40Q8BWR4 Gm45765-201ENSMUST00000212027 1035 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Usp40Q8BWR4 Gm8959-201ENSMUST00000213150 571 ntBASIC17.11■□□□□ 0.33
Usp40Q8BWR4 Gm5455-201ENSMUST00000058710 715 ntBASIC17.11■□□□□ 0.33
Usp40Q8BWR4 Prickle3-201ENSMUST00000033485 2301 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Usp40Q8BWR4 CT030684.3-201ENSMUST00000227308 2445 ntBASIC17.11■□□□□ 0.33
Usp40Q8BWR4 Parp3-203ENSMUST00000123555 2495 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
Usp40Q8BWR4 Rbpsuh-rs3-201ENSMUST00000182751 1441 ntBASIC17.11■□□□□ 0.33
Usp40Q8BWR4 Cdk11b-201ENSMUST00000067081 2595 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
Usp40Q8BWR4 Vamp8-202ENSMUST00000142613 2076 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Usp40Q8BWR4 Mtm1-203ENSMUST00000061970 3379 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Usp40Q8BWR4 Gm38042-201ENSMUST00000191614 5208 ntBASIC17.11■□□□□ 0.33
Usp40Q8BWR4 Zfp367-201ENSMUST00000059817 3532 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Usp40Q8BWR4 Anxa11-201ENSMUST00000022416 2394 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Usp40Q8BWR4 Thegl-201ENSMUST00000031161 1719 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Usp40Q8BWR4 Gm45278-201ENSMUST00000209650 2414 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Usp40Q8BWR4 Ppp1r13l-201ENSMUST00000047621 3130 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Usp40Q8BWR4 Bin3-201ENSMUST00000022680 1767 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Usp40Q8BWR4 Csrnp3-202ENSMUST00000112394 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Usp40Q8BWR4 Pafah1b1-202ENSMUST00000102520 5789 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Usp40Q8BWR4 Kbtbd7-201ENSMUST00000061222 4526 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
Usp40Q8BWR4 Gpr153-201ENSMUST00000055754 3757 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Usp40Q8BWR4 Gm14263-201ENSMUST00000117955 746 ntBASIC17.1■□□□□ 0.33
Usp40Q8BWR4 Gm11450-201ENSMUST00000121144 333 ntBASIC17.1■□□□□ 0.33
Usp40Q8BWR4 n-R5s14-201ENSMUST00000122688 107 ntBASIC17.1■□□□□ 0.33
Usp40Q8BWR4 Gm12348-201ENSMUST00000138915 313 ntTSL 3 BASIC17.1■□□□□ 0.33
Usp40Q8BWR4 Ccdc127-205ENSMUST00000162672 677 ntTSL 3 BASIC17.1■□□□□ 0.33
Usp40Q8BWR4 1700121N20Rik-201ENSMUST00000167922 1027 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Usp40Q8BWR4 Gm5523-201ENSMUST00000180415 997 ntBASIC17.1■□□□□ 0.33
Usp40Q8BWR4 Gm45799-208ENSMUST00000211054 490 ntAPPRIS P2 TSL 3 BASIC17.1■□□□□ 0.33
Usp40Q8BWR4 1700027J07Rik-202ENSMUST00000215747 1060 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Usp40Q8BWR4 Gm5369-201ENSMUST00000217499 588 ntBASIC17.1■□□□□ 0.33
Usp40Q8BWR4 Mcpt1-201ENSMUST00000022836 1014 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Usp40Q8BWR4 Rsph1-201ENSMUST00000024832 1164 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Usp40Q8BWR4 Mill2-201ENSMUST00000072386 1121 ntAPPRIS P4 TSL 1 (best) BASIC17.1■□□□□ 0.33
Usp40Q8BWR4 Eif4g1-204ENSMUST00000115460 5638 ntAPPRIS P3 TSL 5 BASIC17.1■□□□□ 0.33
Usp40Q8BWR4 Atp6ap1-202ENSMUST00000114171 2157 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Usp40Q8BWR4 Tmem56-204ENSMUST00000135818 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Usp40Q8BWR4 Tacr2-201ENSMUST00000020278 2258 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Usp40Q8BWR4 Gm45871-202ENSMUST00000209969 1368 ntTSL 5 BASIC17.1■□□□□ 0.33
Usp40Q8BWR4 Cbs-202ENSMUST00000078509 2403 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Usp40Q8BWR4 Gm28323-201ENSMUST00000186817 2499 ntBASIC17.1■□□□□ 0.33
Usp40Q8BWR4 AL670603.1-201ENSMUST00000216692 1535 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
Usp40Q8BWR4 Ska1-202ENSMUST00000177604 2605 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Usp40Q8BWR4 Ddx55-202ENSMUST00000111438 2737 ntTSL 2 BASIC17.1■□□□□ 0.33
Usp40Q8BWR4 Tctn2-207ENSMUST00000185820 2733 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Usp40Q8BWR4 Styxl1-208ENSMUST00000178515 1651 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Usp40Q8BWR4 Megf9-202ENSMUST00000107359 7924 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Usp40Q8BWR4 Prrt3-201ENSMUST00000101059 3304 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
Usp40Q8BWR4 Sfswap-201ENSMUST00000053737 3313 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
Usp40Q8BWR4 Tle6-201ENSMUST00000072020 2015 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
Retrieved 100 of 76,532 protein–RNA pairs in 34.9 ms