Protein–RNA interactions for Protein: Q61069

Usf1, Upstream stimulatory factor 1, mousemouse

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usf1Q61069 Susd3-201ENSMUST00000021816 1317 ntAPPRIS ALT2 TSL 1 (best) BASIC11.41□□□□□ -0.58
Usf1Q61069 Sh3glb2-202ENSMUST00000100215 1749 ntTSL 1 (best) BASIC11.41□□□□□ -0.58
Usf1Q61069 Hoxd3os1-202ENSMUST00000139005 1701 ntTSL 1 (best) BASIC11.41□□□□□ -0.58
Usf1Q61069 Kcnq3-201ENSMUST00000070256 11824 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Usf1Q61069 Trim59-201ENSMUST00000107802 2939 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Usf1Q61069 Dnmt1-207ENSMUST00000216540 5543 ntAPPRIS ALT2 TSL 1 (best) BASIC11.41□□□□□ -0.58
Usf1Q61069 Smarca4-204ENSMUST00000174008 5405 ntAPPRIS ALT1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Usf1Q61069 Apoo-202ENSMUST00000113896 1032 ntTSL 1 (best) BASIC11.41□□□□□ -0.58
Usf1Q61069 Gm11989-201ENSMUST00000117240 672 ntBASIC11.41□□□□□ -0.58
Usf1Q61069 Gm7851-201ENSMUST00000117574 323 ntBASIC11.41□□□□□ -0.58
Usf1Q61069 Gm11362-201ENSMUST00000118838 850 ntBASIC11.41□□□□□ -0.58
Usf1Q61069 4930583K01Rik-201ENSMUST00000138180 925 ntTSL 1 (best) BASIC11.41□□□□□ -0.58
Usf1Q61069 Rmrp-201ENSMUST00000157463 271 ntBASIC11.41□□□□□ -0.58
Usf1Q61069 Tspo2-205ENSMUST00000162481 473 ntTSL 5 BASIC11.41□□□□□ -0.58
Usf1Q61069 Slc2a4rg-ps-202ENSMUST00000176590 1143 ntBASIC11.41□□□□□ -0.58
Usf1Q61069 Mir6958-201ENSMUST00000184207 73 ntBASIC11.41□□□□□ -0.58
Usf1Q61069 1700088E04Rik-206ENSMUST00000187550 1168 ntTSL 1 (best) BASIC11.41□□□□□ -0.58
Usf1Q61069 Gm28778-201ENSMUST00000190734 785 ntAPPRIS P1 TSL 3 BASIC11.41□□□□□ -0.58
Usf1Q61069 Gm43962-201ENSMUST00000203898 190 ntBASIC11.41□□□□□ -0.58
Usf1Q61069 Gm35060-201ENSMUST00000207669 825 ntAPPRIS P1 TSL 5 BASIC11.41□□□□□ -0.58
Usf1Q61069 Gm45550-201ENSMUST00000209380 946 ntBASIC11.41□□□□□ -0.58
Usf1Q61069 Gm46400-201ENSMUST00000222294 724 ntTSL 5 BASIC11.41□□□□□ -0.58
Usf1Q61069 CT009713.8-202ENSMUST00000224732 385 ntBASIC11.41□□□□□ -0.58
Usf1Q61069 AL732506.1-201ENSMUST00000226420 281 ntBASIC11.41□□□□□ -0.58
Usf1Q61069 Gm11555-201ENSMUST00000073126 492 ntTSL 5 BASIC11.41□□□□□ -0.58
Usf1Q61069 Adgrl1-204ENSMUST00000131717 5152 ntTSL 1 (best) BASIC11.41□□□□□ -0.58
Usf1Q61069 Prkcd-202ENSMUST00000112202 2005 ntTSL 1 (best) BASIC11.41□□□□□ -0.58
Usf1Q61069 Btrc-201ENSMUST00000065601 2978 ntAPPRIS P3 TSL 1 (best) BASIC11.41□□□□□ -0.58
Usf1Q61069 Wnt3a-201ENSMUST00000010044 2761 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Usf1Q61069 Pax5-203ENSMUST00000107825 1445 ntTSL 5 BASIC11.41□□□□□ -0.58
Usf1Q61069 Mfsd3-201ENSMUST00000019224 2169 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Usf1Q61069 Cog7-201ENSMUST00000057576 2902 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Usf1Q61069 Kif1c-202ENSMUST00000094499 5168 ntAPPRIS P2 TSL 1 (best) BASIC11.41□□□□□ -0.58
Usf1Q61069 Zfp467-205ENSMUST00000114560 3266 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Usf1Q61069 Gsdmd-201ENSMUST00000023238 1776 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Usf1Q61069 Gm26651-201ENSMUST00000181851 2325 ntTSL 1 (best) BASIC11.41□□□□□ -0.58
Usf1Q61069 Gm3693-201ENSMUST00000182077 2865 ntTSL 1 (best) BASIC11.41□□□□□ -0.58
Usf1Q61069 Ncam2-201ENSMUST00000037785 4893 ntAPPRIS P3 TSL 1 (best) BASIC11.41□□□□□ -0.58
Usf1Q61069 Gm45332-201ENSMUST00000210508 1949 ntTSL 5 BASIC11.41□□□□□ -0.58
Usf1Q61069 Pgbd5-203ENSMUST00000136892 1739 ntAPPRIS P2 TSL 5 BASIC11.4□□□□□ -0.58
Usf1Q61069 Kpna7-203ENSMUST00000116454 1500 ntAPPRIS P3 TSL 1 (best) BASIC11.4□□□□□ -0.58
Usf1Q61069 Rorc-204ENSMUST00000200009 1543 ntTSL 1 (best) BASIC11.4□□□□□ -0.58
Usf1Q61069 C130012C08Rik-201ENSMUST00000194287 3665 ntBASIC11.4□□□□□ -0.58
Usf1Q61069 Vasp-201ENSMUST00000032561 2215 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Usf1Q61069 Uhrf1bp1-201ENSMUST00000114849 8584 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Usf1Q61069 Gm13812-201ENSMUST00000118061 1347 ntBASIC11.4□□□□□ -0.58
Usf1Q61069 Gm13810-201ENSMUST00000118584 1347 ntBASIC11.4□□□□□ -0.58
Usf1Q61069 Sp100-213ENSMUST00000155094 1666 ntTSL 1 (best) BASIC11.4□□□□□ -0.58
Usf1Q61069 Dio1-201ENSMUST00000082426 1690 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Usf1Q61069 Gm44094-201ENSMUST00000204703 2030 ntBASIC11.4□□□□□ -0.58
Usf1Q61069 Il12rb1-205ENSMUST00000212657 2741 ntAPPRIS ALT2 TSL 5 BASIC11.4□□□□□ -0.58
Usf1Q61069 E130317F20Rik-202ENSMUST00000217802 3420 ntBASIC11.4□□□□□ -0.58
Usf1Q61069 D630023F18Rik-201ENSMUST00000050047 2180 ntAPPRIS P3 TSL 1 (best) BASIC11.4□□□□□ -0.58
Usf1Q61069 Satb2-202ENSMUST00000114415 5805 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Usf1Q61069 Pigq-209ENSMUST00000140304 1835 ntTSL 1 (best) BASIC11.4□□□□□ -0.58
Usf1Q61069 Srsf5-202ENSMUST00000110351 1498 ntAPPRIS ALT2 TSL 1 (best) BASIC11.4□□□□□ -0.58
Usf1Q61069 Kansl2-ps-201ENSMUST00000181818 1461 ntBASIC11.4□□□□□ -0.58
Usf1Q61069 Izumo1-201ENSMUST00000033100 1493 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Usf1Q61069 Rbm11-203ENSMUST00000114253 2699 ntAPPRIS P2 TSL 1 (best) BASIC11.4□□□□□ -0.58
Usf1Q61069 Zfp740-201ENSMUST00000118729 4241 ntAPPRIS ALT2 TSL 1 (best) BASIC11.4□□□□□ -0.58
Usf1Q61069 Lin54-208ENSMUST00000149714 3869 ntTSL 5 BASIC11.4□□□□□ -0.58
Usf1Q61069 Abr-205ENSMUST00000108408 3534 ntTSL 5 BASIC11.4□□□□□ -0.58
Usf1Q61069 Zfp422-202ENSMUST00000079749 3187 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Usf1Q61069 Gm12196-201ENSMUST00000120954 262 ntBASIC11.4□□□□□ -0.58
Usf1Q61069 Rpsa-ps4-201ENSMUST00000121691 888 ntBASIC11.4□□□□□ -0.58
Usf1Q61069 Rdh9-203ENSMUST00000136223 1276 ntTSL 1 (best) BASIC11.4□□□□□ -0.58
Usf1Q61069 Gm11815-201ENSMUST00000139423 708 ntTSL 5 BASIC11.4□□□□□ -0.58
Usf1Q61069 Nat8f7-202ENSMUST00000179613 686 ntAPPRIS P1 BASIC11.4□□□□□ -0.58
Usf1Q61069 3110045C21Rik-201ENSMUST00000180638 1135 ntTSL 1 (best) BASIC11.4□□□□□ -0.58
Usf1Q61069 4930447N08Rik-203ENSMUST00000198879 1157 ntTSL 1 (best) BASIC11.4□□□□□ -0.58
Usf1Q61069 Gm4482-201ENSMUST00000200876 742 ntBASIC11.4□□□□□ -0.58
Usf1Q61069 Washc3-201ENSMUST00000020248 1052 ntAPPRIS P3 TSL 1 (best) BASIC11.4□□□□□ -0.58
Usf1Q61069 Gm6905-201ENSMUST00000205729 511 ntBASIC11.4□□□□□ -0.58
Usf1Q61069 AC153830.1-201ENSMUST00000218522 594 ntTSL 5 BASIC11.4□□□□□ -0.58
Usf1Q61069 C330004P14Rik-201ENSMUST00000218833 628 ntTSL 1 (best) BASIC11.4□□□□□ -0.58
Usf1Q61069 CT009713.8-201ENSMUST00000225448 560 ntBASIC11.4□□□□□ -0.58
Usf1Q61069 Cmtm2b-201ENSMUST00000041973 880 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Usf1Q61069 Olfr1413-201ENSMUST00000074859 1082 ntAPPRIS P1 BASIC11.4□□□□□ -0.58
Usf1Q61069 4930523C07Rik-202ENSMUST00000097513 300 ntAPPRIS P1 BASIC11.4□□□□□ -0.58
Usf1Q61069 Grk4-201ENSMUST00000001112 2408 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Usf1Q61069 Nup62-203ENSMUST00000207103 2414 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Usf1Q61069 Vipr1-201ENSMUST00000035115 4902 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Usf1Q61069 Pcdha11-203ENSMUST00000192447 4583 ntAPPRIS ALT2 TSL 1 (best) BASIC11.4□□□□□ -0.58
Usf1Q61069 Slc25a42-201ENSMUST00000063788 3081 ntAPPRIS P1 TSL 5 BASIC11.4□□□□□ -0.58
Usf1Q61069 BB123696-201ENSMUST00000222580 2056 ntTSL 1 (best) BASIC11.4□□□□□ -0.58
Usf1Q61069 Gm5847-201ENSMUST00000178959 1595 ntBASIC11.4□□□□□ -0.58
Usf1Q61069 AC123619.2-202ENSMUST00000225097 1568 ntBASIC11.4□□□□□ -0.58
Usf1Q61069 Rhbdd2-201ENSMUST00000043707 4207 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Usf1Q61069 Parp10-202ENSMUST00000165738 3367 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Usf1Q61069 Gucd1-201ENSMUST00000039796 3500 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Usf1Q61069 Dpp8-201ENSMUST00000034960 4808 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Usf1Q61069 Dcaf10-204ENSMUST00000155551 7250 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Usf1Q61069 Fam57b-202ENSMUST00000098032 1894 ntTSL 5 BASIC11.4□□□□□ -0.59
Usf1Q61069 Gbe1-207ENSMUST00000171132 3303 ntTSL 1 (best) BASIC11.4□□□□□ -0.59
Usf1Q61069 Gtf3c5-202ENSMUST00000113889 2667 ntAPPRIS ALT2 TSL 1 (best) BASIC11.4□□□□□ -0.59
Usf1Q61069 Cnih4-203ENSMUST00000111059 3127 ntTSL 1 (best) BASIC11.4□□□□□ -0.59
Usf1Q61069 Nudt18-201ENSMUST00000089049 3926 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.59
Usf1Q61069 Gm16741-201ENSMUST00000145085 1818 ntTSL 1 (best) BASIC11.39□□□□□ -0.59
Usf1Q61069 Agpat5-202ENSMUST00000149565 10779 ntAPPRIS P2 TSL 1 (best) BASIC11.39□□□□□ -0.59
Usf1Q61069 Hdac10-201ENSMUST00000082197 2412 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
Retrieved 100 of 76,532 protein–RNA pairs in 51.5 ms