Protein–RNA interactions for Protein: P97386

Lig3, DNA ligase 3, mousemouse

Predictions only

Length 1,015 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lig3P97386 Sqle-202ENSMUST00000100640 2636 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
Lig3P97386 Pcnx2-201ENSMUST00000047239 7236 ntAPPRIS P1 TSL 5 BASIC13.75□□□□□ -0.21
Lig3P97386 Ccdc30-202ENSMUST00000063642 2534 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Lig3P97386 Rtn4rl1-201ENSMUST00000102514 3525 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Lig3P97386 Ptpn7-203ENSMUST00000187985 1990 ntAPPRIS P1 TSL 5 BASIC13.74□□□□□ -0.21
Lig3P97386 Rgs12-207ENSMUST00000114285 2924 ntAPPRIS ALT2 TSL 5 BASIC13.74□□□□□ -0.21
Lig3P97386 Nupl1-206ENSMUST00000225111 2936 ntBASIC13.74□□□□□ -0.21
Lig3P97386 Hdac10-201ENSMUST00000082197 2412 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Lig3P97386 Rpsa-201ENSMUST00000035105 1938 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Lig3P97386 Abcd1-202ENSMUST00000114461 2323 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
Lig3P97386 A330093E20Rik-202ENSMUST00000184994 2327 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
Lig3P97386 Arr3-201ENSMUST00000113769 1359 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Lig3P97386 Aip-202ENSMUST00000117831 1378 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Lig3P97386 Nab1-204ENSMUST00000170269 1371 ntTSL 5 BASIC13.74□□□□□ -0.21
Lig3P97386 Wfdc1-201ENSMUST00000024107 1371 ntAPPRIS P2 TSL 1 (best) BASIC13.74□□□□□ -0.21
Lig3P97386 Foxo6os-201ENSMUST00000152384 2291 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
Lig3P97386 Wwox-203ENSMUST00000109108 1771 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
Lig3P97386 Gm8793-201ENSMUST00000183069 1303 ntBASIC13.74□□□□□ -0.21
Lig3P97386 Lcmt2-202ENSMUST00000110674 3056 ntAPPRIS P1 BASIC13.74□□□□□ -0.21
Lig3P97386 Eng-202ENSMUST00000113272 3021 ntAPPRIS ALT2 TSL 1 (best) BASIC13.74□□□□□ -0.21
Lig3P97386 Selenbp1-201ENSMUST00000090839 1712 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Lig3P97386 Selenbp2-201ENSMUST00000090848 1719 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Lig3P97386 Aldh3a2-203ENSMUST00000108715 2578 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
Lig3P97386 Bnip3l-ps-201ENSMUST00000101577 657 ntBASIC13.74□□□□□ -0.21
Lig3P97386 Myl4-202ENSMUST00000106956 900 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Lig3P97386 Mroh5-202ENSMUST00000110021 2145 ntAPPRIS ALT2 TSL 1 (best) BASIC13.74□□□□□ -0.21
Lig3P97386 Snx29-202ENSMUST00000115814 1125 ntTSL 5 BASIC13.74□□□□□ -0.21
Lig3P97386 Gm11439-201ENSMUST00000118598 409 ntBASIC13.74□□□□□ -0.21
Lig3P97386 Rab15-204ENSMUST00000122419 856 ntTSL 5 BASIC13.74□□□□□ -0.21
Lig3P97386 9330198N18Rik-201ENSMUST00000146702 1247 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
Lig3P97386 Timm10b-208ENSMUST00000151193 1083 ntTSL 2 BASIC13.74□□□□□ -0.21
Lig3P97386 Smim17-203ENSMUST00000161855 664 ntAPPRIS P1 TSL 3 BASIC13.74□□□□□ -0.21
Lig3P97386 Myl4-201ENSMUST00000018800 879 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Lig3P97386 AC158516.1-201ENSMUST00000213921 205 ntTSL 5 BASIC13.74□□□□□ -0.21
Lig3P97386 Bnip3l-ps-202ENSMUST00000220709 1132 ntBASIC13.74□□□□□ -0.21
Lig3P97386 Gm40437-201ENSMUST00000222338 767 ntTSL 5 BASIC13.74□□□□□ -0.21
Lig3P97386 Faah-201ENSMUST00000049095 3827 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Lig3P97386 3300002I08Rik-201ENSMUST00000051153 650 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Lig3P97386 Otud6a-201ENSMUST00000060241 873 ntAPPRIS P1 BASIC13.74□□□□□ -0.21
Lig3P97386 Sp7-201ENSMUST00000078508 2906 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Lig3P97386 Chd7-201ENSMUST00000039267 9444 ntAPPRIS P1 TSL 5 BASIC13.74□□□□□ -0.21
Lig3P97386 Prmt2-201ENSMUST00000020452 2016 ntAPPRIS P3 TSL 1 (best) BASIC13.74□□□□□ -0.21
Lig3P97386 Tcf4-204ENSMUST00000114978 2437 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
Lig3P97386 Fbxo44-208ENSMUST00000167160 1572 ntAPPRIS P1 TSL 5 BASIC13.74□□□□□ -0.21
Lig3P97386 Celrr-202ENSMUST00000181433 1561 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
Lig3P97386 0610006L08Rik-201ENSMUST00000205326 1589 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
Lig3P97386 Cep41-203ENSMUST00000115131 2256 ntAPPRIS ALT2 TSL 5 BASIC13.74□□□□□ -0.21
Lig3P97386 Pbxip1-201ENSMUST00000038942 4479 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Lig3P97386 Klhl26-201ENSMUST00000066597 2991 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Lig3P97386 Fbp1-201ENSMUST00000092888 1479 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Lig3P97386 Sncaip-209ENSMUST00000179625 2568 ntTSL 5 BASIC13.74□□□□□ -0.21
Lig3P97386 Rsl1-201ENSMUST00000021997 2591 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Lig3P97386 Uckl1-201ENSMUST00000057816 1849 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Lig3P97386 Fen1-203ENSMUST00000142241 2152 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Lig3P97386 Tspan12-201ENSMUST00000031678 2490 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Lig3P97386 Nfe2l1-210ENSMUST00000167110 3547 ntAPPRIS ALT2 TSL 2 BASIC13.73□□□□□ -0.21
Lig3P97386 Dtnb-201ENSMUST00000077930 2376 ntAPPRIS P2 TSL 1 (best) BASIC13.73□□□□□ -0.21
Lig3P97386 Pcdh8-204ENSMUST00000195355 3704 ntAPPRIS ALT2 TSL 1 (best) BASIC13.73□□□□□ -0.21
Lig3P97386 Gm10040-201ENSMUST00000080726 1662 ntBASIC13.73□□□□□ -0.21
Lig3P97386 Rufy2-203ENSMUST00000122231 2664 ntTSL 5 BASIC13.73□□□□□ -0.21
Lig3P97386 Slc6a8-201ENSMUST00000033752 3964 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
Lig3P97386 Lingo4-201ENSMUST00000050975 3645 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Lig3P97386 Rnf19b-202ENSMUST00000097874 1992 ntTSL 5 BASIC13.73□□□□□ -0.21
Lig3P97386 Capn3-201ENSMUST00000028748 2606 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
Lig3P97386 Sumf2-204ENSMUST00000171300 2264 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Lig3P97386 Lrrc29-201ENSMUST00000070508 1922 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
Lig3P97386 1700042G07Rik-201ENSMUST00000106492 385 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Lig3P97386 Gm15770-201ENSMUST00000117498 584 ntBASIC13.73□□□□□ -0.21
Lig3P97386 Gm15979-201ENSMUST00000149741 590 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
Lig3P97386 2010320O07Rik-201ENSMUST00000160935 525 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
Lig3P97386 Crb3-205ENSMUST00000169543 778 ntAPPRIS ALT2 TSL 2 BASIC13.73□□□□□ -0.21
Lig3P97386 Gm2310-201ENSMUST00000179217 1131 ntAPPRIS P1 TSL 5 BASIC13.73□□□□□ -0.21
Lig3P97386 2610300A13Rik-201ENSMUST00000192930 503 ntBASIC13.73□□□□□ -0.21
Lig3P97386 Gm2453-202ENSMUST00000195508 568 ntTSL 3 BASIC13.73□□□□□ -0.21
Lig3P97386 Gm43303-201ENSMUST00000200133 669 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
Lig3P97386 AU022133-201ENSMUST00000200601 873 ntBASIC13.73□□□□□ -0.21
Lig3P97386 Gm44064-201ENSMUST00000204964 1087 ntBASIC13.73□□□□□ -0.21
Lig3P97386 Calca-204ENSMUST00000205714 416 ntTSL 2 BASIC13.73□□□□□ -0.21
Lig3P97386 Gm16519-201ENSMUST00000092011 489 ntAPPRIS P1 BASIC13.73□□□□□ -0.21
Lig3P97386 AC139350.1-201ENSMUST00000227064 1594 ntBASIC13.73□□□□□ -0.21
Lig3P97386 Ky-201ENSMUST00000039390 5837 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Lig3P97386 Rnf17-202ENSMUST00000223627 2077 ntBASIC13.73□□□□□ -0.21
Lig3P97386 Pcdhb18-201ENSMUST00000055949 5041 ntAPPRIS P1 BASIC13.73□□□□□ -0.21
Lig3P97386 Inpp4b-215ENSMUST00000217122 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC13.73□□□□□ -0.21
Lig3P97386 Sacs-202ENSMUST00000119509 3468 ntAPPRIS ALT2 TSL 5 BASIC13.73□□□□□ -0.21
Lig3P97386 4931428F04Rik-203ENSMUST00000212219 2044 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Lig3P97386 Gm10176-201ENSMUST00000159707 2264 ntBASIC13.73□□□□□ -0.21
Lig3P97386 Herpud1-205ENSMUST00000161576 1952 ntAPPRIS P2 TSL 1 (best) BASIC13.72□□□□□ -0.21
Lig3P97386 Pdxdc1-201ENSMUST00000023361 4228 ntAPPRIS ALT2 TSL 1 (best) BASIC13.72□□□□□ -0.21
Lig3P97386 Oprm1-205ENSMUST00000078634 1695 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
Lig3P97386 Gm37885-201ENSMUST00000192568 1391 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
Lig3P97386 Pcsk7-209ENSMUST00000216672 3599 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Lig3P97386 Slc52a2-201ENSMUST00000023220 2700 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Lig3P97386 Fosb-203ENSMUST00000207716 3546 ntTSL 5 BASIC13.72□□□□□ -0.21
Lig3P97386 Xlr-202ENSMUST00000067782 1860 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
Lig3P97386 Dnajc13-201ENSMUST00000035170 8012 ntAPPRIS P1 TSL 5 BASIC13.72□□□□□ -0.21
Lig3P97386 AI597479-201ENSMUST00000010434 3458 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Lig3P97386 Pltp-203ENSMUST00000109317 1575 ntTSL 5 BASIC13.72□□□□□ -0.21
Lig3P97386 Gngt2-201ENSMUST00000036088 1587 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Lig3P97386 AC087890.1-201ENSMUST00000219321 1823 ntTSL 5 BASIC13.72□□□□□ -0.21
Retrieved 100 of 76,532 protein–RNA pairs in 28.5 ms