Protein–RNA interactions for Protein: P39428

Traf1, TNF receptor-associated factor 1, mousemouse

Predictions only

Length 409 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Traf1P39428 Afmid-201ENSMUST00000073388 2327 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Traf1P39428 Rcor2-202ENSMUST00000113369 2013 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
Traf1P39428 Slc6a18-208ENSMUST00000222029 2005 ntAPPRIS P3 TSL 1 (best) BASIC14.53□□□□□ -0.08
Traf1P39428 Adi1-201ENSMUST00000020957 1652 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Traf1P39428 Col20a1-205ENSMUST00000228434 5012 ntAPPRIS P2 BASIC14.53□□□□□ -0.08
Traf1P39428 Mgat3-201ENSMUST00000044970 4665 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Traf1P39428 Elmsan1-201ENSMUST00000046266 6848 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Traf1P39428 Nmral1-203ENSMUST00000115851 1306 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
Traf1P39428 Ccdc28b-202ENSMUST00000106035 821 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
Traf1P39428 Pafah1b3-202ENSMUST00000108410 689 ntTSL 3 BASIC14.53□□□□□ -0.08
Traf1P39428 Clic3-202ENSMUST00000114265 808 ntAPPRIS P2 TSL 1 (best) BASIC14.53□□□□□ -0.08
Traf1P39428 Gm15979-201ENSMUST00000149741 590 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
Traf1P39428 Gstp1-201ENSMUST00000169613 757 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Traf1P39428 Gm17586-201ENSMUST00000181502 908 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
Traf1P39428 Rpl7a-ps10-201ENSMUST00000190579 798 ntBASIC14.53□□□□□ -0.08
Traf1P39428 Gm28511-201ENSMUST00000191594 450 ntTSL 3 BASIC14.53□□□□□ -0.08
Traf1P39428 Gm42920-201ENSMUST00000196616 409 ntTSL 3 BASIC14.53□□□□□ -0.08
Traf1P39428 Sox2ot-207ENSMUST00000196987 727 ntTSL 3 BASIC14.53□□□□□ -0.08
Traf1P39428 Dmrt1i-203ENSMUST00000197311 718 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
Traf1P39428 Gm5869-201ENSMUST00000200248 1257 ntBASIC14.53□□□□□ -0.08
Traf1P39428 Gm19605-201ENSMUST00000220603 686 ntTSL 3 BASIC14.53□□□□□ -0.08
Traf1P39428 Crip3-201ENSMUST00000024764 955 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Traf1P39428 Prss34-201ENSMUST00000037453 1216 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Traf1P39428 Olfr368-201ENSMUST00000053990 985 ntAPPRIS P1 BASIC14.53□□□□□ -0.08
Traf1P39428 Rpl7a-ps3-201ENSMUST00000090170 796 ntBASIC14.53□□□□□ -0.08
Traf1P39428 Rpl7a-ps5-201ENSMUST00000095218 807 ntAPPRIS P1 BASIC14.53□□□□□ -0.08
Traf1P39428 Sppl2a-201ENSMUST00000028844 5616 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Traf1P39428 Rnf10-201ENSMUST00000040555 3106 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
Traf1P39428 BC030867-201ENSMUST00000100392 2547 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Traf1P39428 Sirpa-214ENSMUST00000179001 3812 ntAPPRIS P3 TSL 5 BASIC14.53□□□□□ -0.08
Traf1P39428 Klhl38-201ENSMUST00000022985 2212 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Traf1P39428 Wdr54-205ENSMUST00000153148 4634 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Traf1P39428 Sv2b-202ENSMUST00000165175 5524 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
Traf1P39428 Bcl9l-201ENSMUST00000074989 5339 ntAPPRIS P2 TSL 1 (best) BASIC14.52□□□□□ -0.08
Traf1P39428 Gpr19-203ENSMUST00000111932 1711 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
Traf1P39428 Rbbp5-207ENSMUST00000190997 2856 ntAPPRIS P2 TSL 1 (best) BASIC14.52□□□□□ -0.08
Traf1P39428 Kif1c-202ENSMUST00000094499 5168 ntAPPRIS P2 TSL 1 (best) BASIC14.52□□□□□ -0.08
Traf1P39428 Dnm2-206ENSMUST00000172482 2613 ntAPPRIS P4 TSL 5 BASIC14.52□□□□□ -0.08
Traf1P39428 Zfp236-201ENSMUST00000171071 9626 ntAPPRIS P2 TSL 1 (best) BASIC14.52□□□□□ -0.08
Traf1P39428 Hif3a-202ENSMUST00000108492 6402 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.08
Traf1P39428 Pga5-201ENSMUST00000025647 1417 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
Traf1P39428 Actrt2-201ENSMUST00000060062 1435 ntAPPRIS P1 BASIC14.52□□□□□ -0.08
Traf1P39428 Coa4-201ENSMUST00000054310 1391 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
Traf1P39428 Usp20-201ENSMUST00000061544 1360 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
Traf1P39428 Eps8l3-201ENSMUST00000037375 2271 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
Traf1P39428 8430408G22Rik-201ENSMUST00000067354 1339 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
Traf1P39428 1810043G02Rik-202ENSMUST00000105398 899 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.09
Traf1P39428 Park7-202ENSMUST00000105673 919 ntAPPRIS P1 TSL 5 BASIC14.52□□□□□ -0.09
Traf1P39428 Gm6370-201ENSMUST00000110611 1142 ntAPPRIS P2 TSL 5 BASIC14.52□□□□□ -0.09
Traf1P39428 Bud23-203ENSMUST00000111205 1169 ntAPPRIS ALT2 TSL 3 BASIC14.52□□□□□ -0.09
Traf1P39428 Rps10-203ENSMUST00000114882 614 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Traf1P39428 Gm14130-201ENSMUST00000118417 987 ntBASIC14.52□□□□□ -0.09
Traf1P39428 Gm6309-201ENSMUST00000174320 1154 ntAPPRIS P1 TSL 5 BASIC14.52□□□□□ -0.09
Traf1P39428 Gm18212-201ENSMUST00000211678 889 ntBASIC14.52□□□□□ -0.09
Traf1P39428 Vmo1-201ENSMUST00000021179 672 ntAPPRIS P1 TSL 2 BASIC14.52□□□□□ -0.09
Traf1P39428 Aurkc-201ENSMUST00000086248 1154 ntAPPRIS P3 TSL 1 (best) BASIC14.52□□□□□ -0.09
Traf1P39428 Tjp3-205ENSMUST00000219479 2901 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Traf1P39428 Cdc42se1-201ENSMUST00000053872 2805 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Traf1P39428 Cdc25c-201ENSMUST00000060710 1941 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Traf1P39428 Ccrl2-203ENSMUST00000199839 1864 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Traf1P39428 4930432E11Rik-202ENSMUST00000063585 10871 ntBASIC14.52□□□□□ -0.09
Traf1P39428 Zfp354a-202ENSMUST00000102766 2592 ntAPPRIS P3 TSL 1 (best) BASIC14.52□□□□□ -0.09
Traf1P39428 Dnmt3b-208ENSMUST00000109772 4015 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.09
Traf1P39428 Gm14703-201ENSMUST00000145894 1820 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
Traf1P39428 Gm1661-203ENSMUST00000165128 1837 ntAPPRIS ALT2 TSL 5 BASIC14.52□□□□□ -0.09
Traf1P39428 Hid1-202ENSMUST00000106542 3276 ntAPPRIS P3 TSL 1 (best) BASIC14.52□□□□□ -0.09
Traf1P39428 Dst-213ENSMUST00000183302 8788 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
Traf1P39428 Cyp2d26-201ENSMUST00000006094 1645 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Traf1P39428 Egr2-202ENSMUST00000105438 2864 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.09
Traf1P39428 Pde4d-205ENSMUST00000119507 2163 ntTSL 5 BASIC14.51□□□□□ -0.09
Traf1P39428 Odf3-202ENSMUST00000106049 1509 ntTSL 5 BASIC14.51□□□□□ -0.09
Traf1P39428 Prmt2-203ENSMUST00000099572 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
Traf1P39428 Gm45643-201ENSMUST00000211364 1484 ntBASIC14.51□□□□□ -0.09
Traf1P39428 Vmn1r198-202ENSMUST00000226786 6195 ntAPPRIS P2 BASIC14.51□□□□□ -0.09
Traf1P39428 Tfe3-206ENSMUST00000115679 3239 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
Traf1P39428 Dync1i1-204ENSMUST00000115559 2599 ntAPPRIS P3 TSL 1 (best) BASIC14.51□□□□□ -0.09
Traf1P39428 Gtf2ird1-212ENSMUST00000200944 3133 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
Traf1P39428 Lcor-201ENSMUST00000067795 4810 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Traf1P39428 Grin1-202ENSMUST00000114307 4127 ntTSL 5 BASIC14.51□□□□□ -0.09
Traf1P39428 Prkce-202ENSMUST00000097275 6254 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Traf1P39428 Ago1-201ENSMUST00000097888 7227 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Traf1P39428 Nxf1-211ENSMUST00000184970 5591 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
Traf1P39428 Tsta3-201ENSMUST00000023231 1311 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Traf1P39428 Gm12012-201ENSMUST00000118857 1066 ntBASIC14.51□□□□□ -0.09
Traf1P39428 Gm15703-201ENSMUST00000120250 880 ntBASIC14.51□□□□□ -0.09
Traf1P39428 Gm14017-201ENSMUST00000121934 386 ntBASIC14.51□□□□□ -0.09
Traf1P39428 Tex22-201ENSMUST00000012355 1267 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Traf1P39428 Gm11290-201ENSMUST00000124833 396 ntTSL 3 BASIC14.51□□□□□ -0.09
Traf1P39428 Gm15829-201ENSMUST00000145415 869 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
Traf1P39428 Ly6g6c-201ENSMUST00000173207 598 ntAPPRIS ALT2 TSL 3 BASIC14.51□□□□□ -0.09
Traf1P39428 Ly6g6c-202ENSMUST00000173478 962 ntAPPRIS P2 TSL 1 (best) BASIC14.51□□□□□ -0.09
Traf1P39428 Gm26636-201ENSMUST00000181696 1115 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
Traf1P39428 2610016A17Rik-202ENSMUST00000186768 689 ntBASIC14.51□□□□□ -0.09
Traf1P39428 Gm8885-201ENSMUST00000189382 598 ntBASIC14.51□□□□□ -0.09
Traf1P39428 Gm37466-201ENSMUST00000195692 652 ntBASIC14.51□□□□□ -0.09
Traf1P39428 Gm44967-201ENSMUST00000207047 631 ntBASIC14.51□□□□□ -0.09
Traf1P39428 Gm5363-201ENSMUST00000211927 938 ntBASIC14.51□□□□□ -0.09
Traf1P39428 AC113031.8-201ENSMUST00000227856 631 ntBASIC14.51□□□□□ -0.09
Traf1P39428 Fabp4-201ENSMUST00000029041 896 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Traf1P39428 Ccs-201ENSMUST00000037246 1057 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Retrieved 100 of 76,532 protein–RNA pairs in 46.8 ms