Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Olfr648-202ENSMUST00000216612 2929 ntAPPRIS P1 TSL 2 BASIC10.37□□□□□ -0.75
Hmgb3O54879 Tpi-rs5-201ENSMUST00000216947 774 ntBASIC10.37□□□□□ -0.75
Hmgb3O54879 Ndufaf2-202ENSMUST00000223734 556 ntBASIC10.37□□□□□ -0.75
Hmgb3O54879 Pla2g10-201ENSMUST00000023364 1423 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
Hmgb3O54879 Cidec-201ENSMUST00000032416 1703 ntAPPRIS P2 TSL 1 (best) BASIC10.37□□□□□ -0.75
Hmgb3O54879 F7-201ENSMUST00000033820 1859 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
Hmgb3O54879 Hes5-201ENSMUST00000049621 1273 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
Hmgb3O54879 Cacna1c-209ENSMUST00000187386 6906 ntAPPRIS ALT2 TSL 5 BASIC10.37□□□□□ -0.75
Hmgb3O54879 Scml2-206ENSMUST00000112345 4847 ntAPPRIS ALT2 TSL 5 BASIC10.37□□□□□ -0.75
Hmgb3O54879 Olfr484-202ENSMUST00000214722 4676 ntAPPRIS P1 TSL 5 BASIC10.37□□□□□ -0.75
Hmgb3O54879 Lox-201ENSMUST00000025409 3604 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
Hmgb3O54879 Trappc8-202ENSMUST00000097658 2703 ntAPPRIS P3 TSL 1 (best) BASIC10.37□□□□□ -0.75
Hmgb3O54879 Rbm39-217ENSMUST00000146297 2580 ntAPPRIS ALT1 TSL 1 (best) BASIC10.37□□□□□ -0.75
Hmgb3O54879 Gm2420-201ENSMUST00000119864 2149 ntBASIC10.37□□□□□ -0.75
Hmgb3O54879 Gm10406-202ENSMUST00000170738 1955 ntAPPRIS P1 TSL 5 BASIC10.37□□□□□ -0.75
Hmgb3O54879 Paqr5-201ENSMUST00000034817 3566 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
Hmgb3O54879 Mzf1-201ENSMUST00000069289 3597 ntTSL 1 (best) BASIC10.37□□□□□ -0.75
Hmgb3O54879 Rita1-207ENSMUST00000177800 1668 ntAPPRIS P1 TSL 5 BASIC10.37□□□□□ -0.75
Hmgb3O54879 Gm42463-201ENSMUST00000198041 4886 ntBASIC10.37□□□□□ -0.75
Hmgb3O54879 Pdgfrl-201ENSMUST00000034004 1548 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
Hmgb3O54879 Zfp174-201ENSMUST00000041778 5897 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
Hmgb3O54879 Mthfd1l-202ENSMUST00000117291 3669 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
Hmgb3O54879 Kalrn-206ENSMUST00000114954 4677 ntTSL 1 (best) BASIC10.37□□□□□ -0.75
Hmgb3O54879 Ebf2-202ENSMUST00000176029 2784 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
Hmgb3O54879 1700047I17Rik2-201ENSMUST00000177978 3863 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
Hmgb3O54879 Pkm-202ENSMUST00000163694 2041 ntAPPRIS ALT1 TSL 5 BASIC10.36□□□□□ -0.75
Hmgb3O54879 C530043K16Rik-201ENSMUST00000201865 3109 ntBASIC10.36□□□□□ -0.75
Hmgb3O54879 Hnrnpk-202ENSMUST00000116403 2970 ntTSL 1 (best) BASIC10.36□□□□□ -0.75
Hmgb3O54879 Catsper4-201ENSMUST00000055892 1725 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
Hmgb3O54879 Mtmr12-202ENSMUST00000071993 3351 ntTSL 1 (best) BASIC10.36□□□□□ -0.75
Hmgb3O54879 Jup-201ENSMUST00000001592 3205 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
Hmgb3O54879 Asic3-202ENSMUST00000196296 1593 ntAPPRIS P1 TSL 5 BASIC10.36□□□□□ -0.75
Hmgb3O54879 Igsf5-202ENSMUST00000081093 1554 ntTSL 1 (best) BASIC10.36□□□□□ -0.75
Hmgb3O54879 Adcy7-202ENSMUST00000168545 5937 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
Hmgb3O54879 Cdh22-201ENSMUST00000065438 3702 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
Hmgb3O54879 4931406C07Rik-203ENSMUST00000180339 2756 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
Hmgb3O54879 B9d1-201ENSMUST00000102657 817 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
Hmgb3O54879 Hist1h3e-201ENSMUST00000105107 836 ntAPPRIS P1 BASIC10.36□□□□□ -0.75
Hmgb3O54879 Msmp-201ENSMUST00000107884 743 ntAPPRIS P1 TSL 3 BASIC10.36□□□□□ -0.75
Hmgb3O54879 Gm12485-201ENSMUST00000119641 291 ntBASIC10.36□□□□□ -0.75
Hmgb3O54879 Abhd11os-201ENSMUST00000136022 604 ntTSL 2 BASIC10.36□□□□□ -0.75
Hmgb3O54879 Hpca-207ENSMUST00000139450 812 ntAPPRIS P1 TSL 3 BASIC10.36□□□□□ -0.75
Hmgb3O54879 Prss45-202ENSMUST00000146794 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC10.36□□□□□ -0.75
Hmgb3O54879 Fam219aos-201ENSMUST00000151164 708 ntTSL 2 BASIC10.36□□□□□ -0.75
Hmgb3O54879 Baiap2l2-205ENSMUST00000170955 1058 ntTSL 1 (best) BASIC10.36□□□□□ -0.75
Hmgb3O54879 Gm28277-201ENSMUST00000187450 885 ntTSL 3 BASIC10.36□□□□□ -0.75
Hmgb3O54879 Agrp-202ENSMUST00000194091 734 ntAPPRIS P1 TSL 2 BASIC10.36□□□□□ -0.75
Hmgb3O54879 Smyd3-207ENSMUST00000194237 1047 ntTSL 2 BASIC10.36□□□□□ -0.75
Hmgb3O54879 Shisa5-218ENSMUST00000200515 1005 ntTSL 1 (best) BASIC10.36□□□□□ -0.75
Hmgb3O54879 Rbfox2-208ENSMUST00000227930 1218 ntBASIC10.36□□□□□ -0.75
Hmgb3O54879 Lce1d-201ENSMUST00000029524 678 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
Hmgb3O54879 Anapc15-202ENSMUST00000035395 836 ntTSL 1 (best) BASIC10.36□□□□□ -0.75
Hmgb3O54879 Ucn-201ENSMUST00000043475 504 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
Hmgb3O54879 S100a8-201ENSMUST00000069927 486 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
Hmgb3O54879 Zmat5-201ENSMUST00000009220 792 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
Hmgb3O54879 Nmt1-201ENSMUST00000021314 4861 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
Hmgb3O54879 1700010B13Rik-202ENSMUST00000189435 1549 ntTSL 3 BASIC10.36□□□□□ -0.75
Hmgb3O54879 C130050O18Rik-201ENSMUST00000052176 1532 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
Hmgb3O54879 AC154176.2-201ENSMUST00000225376 6429 ntBASIC10.36□□□□□ -0.75
Hmgb3O54879 Nlgn3-206ENSMUST00000151528 8541 ntAPPRIS ALT2 TSL 5 BASIC10.36□□□□□ -0.75
Hmgb3O54879 Cit-212ENSMUST00000141101 6794 ntTSL 5 BASIC10.36□□□□□ -0.75
Hmgb3O54879 Arhgef15-203ENSMUST00000108671 4372 ntAPPRIS P1 TSL 5 BASIC10.36□□□□□ -0.75
Hmgb3O54879 Map1b-203ENSMUST00000223725 2669 ntBASIC10.36□□□□□ -0.75
Hmgb3O54879 Dolpp1-203ENSMUST00000123202 2294 ntTSL 1 (best) BASIC10.36□□□□□ -0.75
Hmgb3O54879 Dolpp1-201ENSMUST00000028209 2251 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
Hmgb3O54879 Asap3-201ENSMUST00000047526 4225 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
Hmgb3O54879 Dopey2-201ENSMUST00000045004 7319 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
Hmgb3O54879 L1td1-204ENSMUST00000173659 2547 ntAPPRIS ALT2 TSL 2 BASIC10.36□□□□□ -0.75
Hmgb3O54879 Scn8a-203ENSMUST00000108908 7030 ntAPPRIS ALT1 TSL 5 BASIC10.36□□□□□ -0.75
Hmgb3O54879 Kcnd3-201ENSMUST00000079169 2102 ntAPPRIS P4 TSL 1 (best) BASIC10.36□□□□□ -0.75
Hmgb3O54879 Csf1-201ENSMUST00000014743 4176 ntAPPRIS P3 TSL 1 (best) BASIC10.36□□□□□ -0.75
Hmgb3O54879 Mbtps1-201ENSMUST00000081381 4195 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
Hmgb3O54879 Clcnkb-201ENSMUST00000006378 2370 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
Hmgb3O54879 Zfp683-201ENSMUST00000105884 1471 ntAPPRIS P1 TSL 5 BASIC10.36□□□□□ -0.75
Hmgb3O54879 Ascc1-201ENSMUST00000050516 1450 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
Hmgb3O54879 Gipr-201ENSMUST00000094790 2856 ntAPPRIS P1 TSL 5 BASIC10.36□□□□□ -0.75
Hmgb3O54879 Tpra1-219ENSMUST00000203345 3359 ntTSL 5 BASIC10.35□□□□□ -0.75
Hmgb3O54879 Zfand4-202ENSMUST00000112900 3220 ntAPPRIS ALT2 TSL 5 BASIC10.35□□□□□ -0.75
Hmgb3O54879 Aplp2-209ENSMUST00000217641 3462 ntTSL 1 (best) BASIC10.35□□□□□ -0.75
Hmgb3O54879 Ube2l6-201ENSMUST00000102642 1560 ntAPPRIS P1 TSL 1 (best) BASIC10.35□□□□□ -0.75
Hmgb3O54879 Slc29a3-201ENSMUST00000117513 5240 ntAPPRIS P1 TSL 1 (best) BASIC10.35□□□□□ -0.75
Hmgb3O54879 Pparg-204ENSMUST00000203732 1826 ntAPPRIS P1 TSL 1 (best) BASIC10.35□□□□□ -0.75
Hmgb3O54879 Tnfrsf13b-201ENSMUST00000010286 2556 ntAPPRIS P1 TSL 1 (best) BASIC10.35□□□□□ -0.75
Hmgb3O54879 Gfm1-201ENSMUST00000077271 4078 ntAPPRIS P1 TSL 1 (best) BASIC10.35□□□□□ -0.75
Hmgb3O54879 Kcns2-202ENSMUST00000228725 4906 ntAPPRIS P1 BASIC10.35□□□□□ -0.75
Hmgb3O54879 Ubxn10-203ENSMUST00000105811 2926 ntAPPRIS P1 TSL 1 (best) BASIC10.35□□□□□ -0.75
Hmgb3O54879 Chmp3-201ENSMUST00000059462 2654 ntAPPRIS P1 TSL 1 (best) BASIC10.35□□□□□ -0.75
Hmgb3O54879 Abcc9-206ENSMUST00000205202 4752 ntAPPRIS ALT2 TSL 5 BASIC10.35□□□□□ -0.75
Hmgb3O54879 Ppara-203ENSMUST00000109423 2519 ntAPPRIS P1 TSL 1 (best) BASIC10.35□□□□□ -0.75
Hmgb3O54879 Sdk1-201ENSMUST00000074546 7063 ntTSL 1 (best) BASIC10.35□□□□□ -0.75
Hmgb3O54879 4932431P20Rik-202ENSMUST00000141713 9288 ntBASIC10.35□□□□□ -0.75
Hmgb3O54879 Abhd18-203ENSMUST00000159774 4455 ntAPPRIS P1 TSL 5 BASIC10.35□□□□□ -0.75
Hmgb3O54879 Thrb-203ENSMUST00000091471 1758 ntAPPRIS P1 TSL 1 (best) BASIC10.35□□□□□ -0.75
Hmgb3O54879 Stard4-201ENSMUST00000025236 5097 ntAPPRIS P1 TSL 1 (best) BASIC10.35□□□□□ -0.75
Hmgb3O54879 Zscan22-201ENSMUST00000055528 2620 ntAPPRIS P1 TSL 1 (best) BASIC10.35□□□□□ -0.75
Hmgb3O54879 Cd163l1-201ENSMUST00000084460 3454 ntAPPRIS P2 TSL 5 BASIC10.35□□□□□ -0.75
Hmgb3O54879 Cbfa2t2-202ENSMUST00000099178 3247 ntTSL 1 (best) BASIC10.35□□□□□ -0.75
Hmgb3O54879 Mif4gd-202ENSMUST00000106506 993 ntTSL 3 BASIC10.35□□□□□ -0.75
Hmgb3O54879 Rgs20-202ENSMUST00000118000 2125 ntAPPRIS ALT2 TSL 5 BASIC10.35□□□□□ -0.75
Hmgb3O54879 Gm5638-201ENSMUST00000118618 1258 ntBASIC10.35□□□□□ -0.75
Retrieved 100 of 76,532 protein–RNA pairs in 250.6 ms