Protein–RNA interactions for Protein: B1AR17

Chd3, Chromodomain helicase DNA-binding protein 3, mousemouse

Predictions only

Length 2,055 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd3B1AR17 D8Ertd738e-201ENSMUST00000019506 616 ntAPPRIS P1 TSL 2 BASIC12.28□□□□□ -0.44
Chd3B1AR17 Erg28-201ENSMUST00000021676 1169 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Chd3B1AR17 1700011B04Rik-203ENSMUST00000220654 1033 ntTSL 5 BASIC12.28□□□□□ -0.44
Chd3B1AR17 1700011B04Rik-209ENSMUST00000221760 779 ntTSL 5 BASIC12.28□□□□□ -0.44
Chd3B1AR17 AL732506.1-201ENSMUST00000226420 281 ntBASIC12.28□□□□□ -0.44
Chd3B1AR17 Nme8-202ENSMUST00000091763 2122 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Chd3B1AR17 Iqsec3-201ENSMUST00000046373 6840 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Chd3B1AR17 0610040F04Rik-201ENSMUST00000137478 1734 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
Chd3B1AR17 Cct5-201ENSMUST00000022842 1853 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Chd3B1AR17 Ccnk-201ENSMUST00000101055 2627 ntAPPRIS P1 TSL 5 BASIC12.28□□□□□ -0.44
Chd3B1AR17 Gm43908-201ENSMUST00000205074 1472 ntBASIC12.27□□□□□ -0.44
Chd3B1AR17 Nsmce2-202ENSMUST00000168722 2679 ntTSL 1 (best) BASIC12.27□□□□□ -0.44
Chd3B1AR17 Otop1-201ENSMUST00000063136 3106 ntAPPRIS ALT2 TSL 5 BASIC12.27□□□□□ -0.44
Chd3B1AR17 Lrfn3-201ENSMUST00000046351 2886 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
Chd3B1AR17 Luc7l2-207ENSMUST00000161227 2405 ntTSL 1 (best) BASIC12.27□□□□□ -0.44
Chd3B1AR17 Cacna2d1-209ENSMUST00000199704 3861 ntTSL 1 (best) BASIC12.27□□□□□ -0.44
Chd3B1AR17 Lag3-201ENSMUST00000032217 2001 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
Chd3B1AR17 Arfgap1-204ENSMUST00000108861 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC12.27□□□□□ -0.44
Chd3B1AR17 Nudt5-205ENSMUST00000179748 1590 ntAPPRIS P1 TSL 5 BASIC12.27□□□□□ -0.45
Chd3B1AR17 Ighv8-9-201ENSMUST00000103533 301 ntAPPRIS P1 BASIC12.27□□□□□ -0.45
Chd3B1AR17 Ighv8-13-201ENSMUST00000103542 303 ntAPPRIS ALT2 BASIC12.27□□□□□ -0.45
Chd3B1AR17 Gm4909-201ENSMUST00000118749 794 ntBASIC12.27□□□□□ -0.45
Chd3B1AR17 Tepp-204ENSMUST00000161029 968 ntAPPRIS P4 TSL 1 (best) BASIC12.27□□□□□ -0.45
Chd3B1AR17 Gm18734-201ENSMUST00000172937 808 ntBASIC12.27□□□□□ -0.45
Chd3B1AR17 Mir5120-201ENSMUST00000175020 78 ntBASIC12.27□□□□□ -0.45
Chd3B1AR17 Gm37312-201ENSMUST00000195753 685 ntTSL 5 BASIC12.27□□□□□ -0.45
Chd3B1AR17 Rassf4-202ENSMUST00000203029 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC12.27□□□□□ -0.45
Chd3B1AR17 Gm13097-201ENSMUST00000210722 397 ntBASIC12.27□□□□□ -0.45
Chd3B1AR17 Gm19605-202ENSMUST00000221514 1084 ntTSL 5 BASIC12.27□□□□□ -0.45
Chd3B1AR17 Col26a1-202ENSMUST00000111103 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC12.27□□□□□ -0.45
Chd3B1AR17 Kcnip4-207ENSMUST00000176191 2116 ntTSL 5 BASIC12.27□□□□□ -0.45
Chd3B1AR17 Tubb2a-ps2-201ENSMUST00000221547 1339 ntBASIC12.27□□□□□ -0.45
Chd3B1AR17 Tmem33-204ENSMUST00000161369 6164 ntAPPRIS P3 TSL 1 (best) BASIC12.27□□□□□ -0.45
Chd3B1AR17 Cacng2-201ENSMUST00000019290 5510 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Chd3B1AR17 Trmt1-204ENSMUST00000109768 2044 ntAPPRIS ALT2 TSL 1 (best) BASIC12.27□□□□□ -0.45
Chd3B1AR17 Jade1-204ENSMUST00000170711 2896 ntTSL 5 BASIC12.27□□□□□ -0.45
Chd3B1AR17 Ccdc22-201ENSMUST00000033483 2353 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Chd3B1AR17 Adam32-201ENSMUST00000119720 2235 ntAPPRIS ALT2 TSL 1 (best) BASIC12.27□□□□□ -0.45
Chd3B1AR17 Inpp5e-205ENSMUST00000145701 4147 ntAPPRIS P3 TSL 1 (best) BASIC12.27□□□□□ -0.45
Chd3B1AR17 Zfp219-201ENSMUST00000067549 2933 ntAPPRIS P2 TSL 1 (best) BASIC12.27□□□□□ -0.45
Chd3B1AR17 Hacd2-201ENSMUST00000061156 3603 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Chd3B1AR17 Chodl-202ENSMUST00000069148 2051 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
Chd3B1AR17 Chd4-203ENSMUST00000112392 6652 ntAPPRIS ALT2 TSL 5 BASIC12.27□□□□□ -0.45
Chd3B1AR17 Sema6d-208ENSMUST00000103241 6157 ntAPPRIS ALT2 TSL 5 BASIC12.27□□□□□ -0.45
Chd3B1AR17 Ttc3-201ENSMUST00000117648 7417 ntAPPRIS P1 TSL 5 BASIC12.27□□□□□ -0.45
Chd3B1AR17 Fam13c-202ENSMUST00000105436 3380 ntAPPRIS ALT2 TSL 5 BASIC12.27□□□□□ -0.45
Chd3B1AR17 Dixdc1-204ENSMUST00000118707 989 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
Chd3B1AR17 Gm13563-201ENSMUST00000125518 643 ntTSL 3 BASIC12.26□□□□□ -0.45
Chd3B1AR17 Gm11772-201ENSMUST00000136542 532 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
Chd3B1AR17 Lypd1-203ENSMUST00000159529 989 ntTSL 2 BASIC12.26□□□□□ -0.45
Chd3B1AR17 Arf4os-201ENSMUST00000166902 566 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
Chd3B1AR17 Abhd14a-203ENSMUST00000171925 1122 ntTSL 3 BASIC12.26□□□□□ -0.45
Chd3B1AR17 Gnpda2-207ENSMUST00000173927 1011 ntAPPRIS ALT1 TSL 5 BASIC12.26□□□□□ -0.45
Chd3B1AR17 1700031P21Rik-203ENSMUST00000191400 466 ntTSL 3 BASIC12.26□□□□□ -0.45
Chd3B1AR17 Fn3k-201ENSMUST00000026175 1047 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Chd3B1AR17 1810062G17Rik-201ENSMUST00000029268 911 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Chd3B1AR17 Aurkc-201ENSMUST00000086248 1154 ntAPPRIS P3 TSL 1 (best) BASIC12.26□□□□□ -0.45
Chd3B1AR17 Tmem201-203ENSMUST00000105687 3697 ntAPPRIS ALT2 TSL 1 (best) BASIC12.26□□□□□ -0.45
Chd3B1AR17 Nsd3-208ENSMUST00000146919 3652 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
Chd3B1AR17 Tmcc2-206ENSMUST00000142609 2769 ntAPPRIS ALT2 TSL 1 (best) BASIC12.26□□□□□ -0.45
Chd3B1AR17 Pltp-202ENSMUST00000109316 2226 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Chd3B1AR17 Igdcc4-202ENSMUST00000077696 6361 ntAPPRIS ALT2 TSL 5 BASIC12.26□□□□□ -0.45
Chd3B1AR17 Pfkfb3-213ENSMUST00000171188 2058 ntTSL 5 BASIC12.26□□□□□ -0.45
Chd3B1AR17 Ncor2-206ENSMUST00000111402 8862 ntAPPRIS ALT2 TSL 5 BASIC12.26□□□□□ -0.45
Chd3B1AR17 Kcnj12-203ENSMUST00000108717 2463 ntAPPRIS P3 TSL 1 (best) BASIC12.26□□□□□ -0.45
Chd3B1AR17 Cpped1-201ENSMUST00000073371 1922 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
Chd3B1AR17 Usp10-210ENSMUST00000144458 3726 ntAPPRIS P3 TSL 1 (best) BASIC12.26□□□□□ -0.45
Chd3B1AR17 Klhl15-201ENSMUST00000096369 3944 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
Chd3B1AR17 Fuca2-201ENSMUST00000060212 2007 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Chd3B1AR17 Ubr7-201ENSMUST00000046404 3261 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Chd3B1AR17 Spats2l-203ENSMUST00000164302 2088 ntTSL 5 BASIC12.26□□□□□ -0.45
Chd3B1AR17 Mrpl3-201ENSMUST00000035177 3972 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Chd3B1AR17 Tle3-201ENSMUST00000034820 4646 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
Chd3B1AR17 Rpl15-203ENSMUST00000100799 802 ntAPPRIS P1 TSL 2 BASIC12.26□□□□□ -0.45
Chd3B1AR17 Rps19-ps11-201ENSMUST00000160308 433 ntBASIC12.26□□□□□ -0.45
Chd3B1AR17 Gm5070-201ENSMUST00000177599 862 ntBASIC12.26□□□□□ -0.45
Chd3B1AR17 Gm8494-201ENSMUST00000178171 1233 ntBASIC12.26□□□□□ -0.45
Chd3B1AR17 AC093022.1-201ENSMUST00000226949 1072 ntBASIC12.26□□□□□ -0.45
Chd3B1AR17 4930596D02Rik-201ENSMUST00000043266 1160 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Chd3B1AR17 Elovl1-202ENSMUST00000067896 1137 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Chd3B1AR17 Gm10312-201ENSMUST00000078515 489 ntBASIC12.26□□□□□ -0.45
Chd3B1AR17 Gpr157-201ENSMUST00000094451 4900 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Chd3B1AR17 Sp9-201ENSMUST00000090813 4514 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Chd3B1AR17 Zscan10-202ENSMUST00000115509 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC12.26□□□□□ -0.45
Chd3B1AR17 Arhgap25-202ENSMUST00000101197 2493 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
Chd3B1AR17 Adat1-203ENSMUST00000139820 2762 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
Chd3B1AR17 Pcdha1-202ENSMUST00000193839 4925 ntAPPRIS ALT2 TSL 1 (best) BASIC12.26□□□□□ -0.45
Chd3B1AR17 Gk5-202ENSMUST00000122383 4455 ntAPPRIS P2 TSL 1 (best) BASIC12.25□□□□□ -0.45
Chd3B1AR17 Lsp1-201ENSMUST00000018963 1695 ntAPPRIS ALT2 TSL 1 (best) BASIC12.25□□□□□ -0.45
Chd3B1AR17 Rph3al-201ENSMUST00000021208 1690 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
Chd3B1AR17 Esrp1-203ENSMUST00000108311 3864 ntTSL 5 BASIC12.25□□□□□ -0.45
Chd3B1AR17 Rtn4-205ENSMUST00000102843 4618 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
Chd3B1AR17 Cad-206ENSMUST00000201838 3153 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
Chd3B1AR17 Adam23-205ENSMUST00000114107 6110 ntAPPRIS ALT2 TSL 5 BASIC12.25□□□□□ -0.45
Chd3B1AR17 Slc5a11-207ENSMUST00000167299 2022 ntAPPRIS P1 TSL 5 BASIC12.25□□□□□ -0.45
Chd3B1AR17 Ubl5-206ENSMUST00000161486 794 ntTSL 2 BASIC12.25□□□□□ -0.45
Chd3B1AR17 Pfn1-201ENSMUST00000018437 861 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Chd3B1AR17 Gm7003-201ENSMUST00000195089 312 ntBASIC12.25□□□□□ -0.45
Chd3B1AR17 Lsm7-201ENSMUST00000035775 468 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Chd3B1AR17 Exd2-201ENSMUST00000038185 3310 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Retrieved 100 of 76,532 protein–RNA pairs in 42.4 ms