Protein–RNA interactions for Protein: Q9DC48

Cdc40, Pre-mRNA-processing factor 17, mousemouse

Known RBP Predictions only

Length 579 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdc40Q9DC48 Gm43758-201ENSMUST00000199500 367 ntBASIC11.7□□□□□ -0.54
Cdc40Q9DC48 Gm4768-201ENSMUST00000206199 686 ntBASIC11.7□□□□□ -0.54
Cdc40Q9DC48 Rfxank-203ENSMUST00000212320 1121 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
Cdc40Q9DC48 Mrap-201ENSMUST00000038197 1001 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Cdc40Q9DC48 Myo16-203ENSMUST00000207477 7169 ntAPPRIS P2 TSL 1 (best) BASIC11.7□□□□□ -0.54
Cdc40Q9DC48 Npepps-219ENSMUST00000172108 2924 ntAPPRIS ALT2 TSL 5 BASIC11.7□□□□□ -0.54
Cdc40Q9DC48 Acap1-201ENSMUST00000001631 2482 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Cdc40Q9DC48 Klc2-202ENSMUST00000113727 2874 ntTSL 5 BASIC11.7□□□□□ -0.54
Cdc40Q9DC48 Slc36a1-202ENSMUST00000108867 1611 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Cdc40Q9DC48 Slc39a8-201ENSMUST00000029810 3203 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Cdc40Q9DC48 Ttc34-201ENSMUST00000050220 3200 ntAPPRIS P2 TSL 1 (best) BASIC11.7□□□□□ -0.54
Cdc40Q9DC48 Flcn-202ENSMUST00000091246 2768 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Cdc40Q9DC48 Ccdc22-201ENSMUST00000033483 2353 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Cdc40Q9DC48 Rab3a-203ENSMUST00000110092 1556 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Cdc40Q9DC48 Gemin2-201ENSMUST00000021379 1588 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Cdc40Q9DC48 Sema4a-213ENSMUST00000165898 3125 ntAPPRIS P1 TSL 5 BASIC11.7□□□□□ -0.54
Cdc40Q9DC48 Spock3-201ENSMUST00000093480 3024 ntAPPRIS P3 TSL 5 BASIC11.7□□□□□ -0.54
Cdc40Q9DC48 Setdb2-201ENSMUST00000095775 3034 ntAPPRIS ALT2 TSL 5 BASIC11.7□□□□□ -0.54
Cdc40Q9DC48 Parp2-201ENSMUST00000036126 1894 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Cdc40Q9DC48 Fbxo46-201ENSMUST00000053109 4873 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Cdc40Q9DC48 Cdc37l1-208ENSMUST00000225310 4079 ntAPPRIS ALT2 BASIC11.7□□□□□ -0.54
Cdc40Q9DC48 Smug1-201ENSMUST00000064067 3281 ntAPPRIS P1 TSL 2 BASIC11.7□□□□□ -0.54
Cdc40Q9DC48 Cldn18-204ENSMUST00000136429 1409 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
Cdc40Q9DC48 Tufm-202ENSMUST00000106392 1754 ntTSL 2 BASIC11.69□□□□□ -0.54
Cdc40Q9DC48 Gadl1-203ENSMUST00000121770 1763 ntAPPRIS P2 TSL 5 BASIC11.69□□□□□ -0.54
Cdc40Q9DC48 Gpr139-201ENSMUST00000084650 4843 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Cdc40Q9DC48 Polr3e-202ENSMUST00000106483 3001 ntAPPRIS P3 TSL 5 BASIC11.69□□□□□ -0.54
Cdc40Q9DC48 AC125108.1-201ENSMUST00000218986 2330 ntBASIC11.69□□□□□ -0.54
Cdc40Q9DC48 Gm8793-201ENSMUST00000183069 1303 ntBASIC11.69□□□□□ -0.54
Cdc40Q9DC48 Oprm1-202ENSMUST00000052751 1334 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
Cdc40Q9DC48 Oprm1-207ENSMUST00000092731 1332 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
Cdc40Q9DC48 Foxb1-201ENSMUST00000071281 2984 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Cdc40Q9DC48 Lmln-201ENSMUST00000023497 6147 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Cdc40Q9DC48 Oaz2-ps-201ENSMUST00000121735 537 ntBASIC11.69□□□□□ -0.54
Cdc40Q9DC48 Gm17077-201ENSMUST00000133179 279 ntTSL 5 BASIC11.69□□□□□ -0.54
Cdc40Q9DC48 Gm20521-201ENSMUST00000134077 1245 ntAPPRIS P1 TSL 5 BASIC11.69□□□□□ -0.54
Cdc40Q9DC48 E130006D01Rik-203ENSMUST00000137398 906 ntTSL 2 BASIC11.69□□□□□ -0.54
Cdc40Q9DC48 Hnf4aos-203ENSMUST00000141329 839 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
Cdc40Q9DC48 2010320O07Rik-201ENSMUST00000160935 525 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
Cdc40Q9DC48 Snhg8-203ENSMUST00000199645 528 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
Cdc40Q9DC48 Tmem205-203ENSMUST00000213698 705 ntAPPRIS P1 TSL 3 BASIC11.69□□□□□ -0.54
Cdc40Q9DC48 AC164612.1-201ENSMUST00000216699 517 ntTSL 5 BASIC11.69□□□□□ -0.54
Cdc40Q9DC48 Trem3-201ENSMUST00000048065 994 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Cdc40Q9DC48 Olfr463-201ENSMUST00000081417 936 ntAPPRIS P1 BASIC11.69□□□□□ -0.54
Cdc40Q9DC48 Hoxb13-201ENSMUST00000062709 2206 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Cdc40Q9DC48 F3-201ENSMUST00000029771 1872 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Cdc40Q9DC48 Nup88-203ENSMUST00000108531 2453 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
Cdc40Q9DC48 Hvcn1-201ENSMUST00000072602 2790 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Cdc40Q9DC48 Ccnt1-208ENSMUST00000169707 7397 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Cdc40Q9DC48 D030025P21Rik-202ENSMUST00000220643 3987 ntBASIC11.69□□□□□ -0.54
Cdc40Q9DC48 Osbpl1a-201ENSMUST00000074352 3956 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Cdc40Q9DC48 Endou-201ENSMUST00000023105 2404 ntAPPRIS P3 TSL 1 (best) BASIC11.69□□□□□ -0.54
Cdc40Q9DC48 Wwox-203ENSMUST00000109108 1771 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
Cdc40Q9DC48 Rfx7-203ENSMUST00000183372 1457 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
Cdc40Q9DC48 Otud7b-202ENSMUST00000090785 8101 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Cdc40Q9DC48 Zbtb42-203ENSMUST00000174780 3160 ntTSL 2 BASIC11.69□□□□□ -0.54
Cdc40Q9DC48 Tmem39a-201ENSMUST00000002924 2871 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Cdc40Q9DC48 Tbc1d1-202ENSMUST00000101195 5432 ntAPPRIS P3 TSL 1 (best) BASIC11.69□□□□□ -0.54
Cdc40Q9DC48 Gnb4-205ENSMUST00000155737 5997 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Cdc40Q9DC48 Rnf10-202ENSMUST00000112096 3112 ntAPPRIS P3 TSL 1 (best) BASIC11.69□□□□□ -0.54
Cdc40Q9DC48 Ablim2-209ENSMUST00000129347 1995 ntAPPRIS ALT2 TSL 5 BASIC11.68□□□□□ -0.54
Cdc40Q9DC48 Bbs4-201ENSMUST00000026265 2518 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
Cdc40Q9DC48 Serpinb12-201ENSMUST00000081277 1689 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
Cdc40Q9DC48 Klhl38-201ENSMUST00000022985 2212 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
Cdc40Q9DC48 Tmem80-204ENSMUST00000128906 1387 ntTSL 2 BASIC11.68□□□□□ -0.54
Cdc40Q9DC48 AC116503.1-201ENSMUST00000215445 2192 ntBASIC11.68□□□□□ -0.54
Cdc40Q9DC48 Mettl17-201ENSMUST00000047899 1623 ntAPPRIS P2 TSL 1 (best) BASIC11.68□□□□□ -0.54
Cdc40Q9DC48 Pxn-202ENSMUST00000086523 2667 ntAPPRIS ALT2 TSL 2 BASIC11.68□□□□□ -0.54
Cdc40Q9DC48 Zfp41-201ENSMUST00000054555 3736 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
Cdc40Q9DC48 B230209E15Rik-201ENSMUST00000209115 1597 ntTSL 5 BASIC11.68□□□□□ -0.54
Cdc40Q9DC48 Nars-201ENSMUST00000025483 2632 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
Cdc40Q9DC48 Gm43417-201ENSMUST00000201586 5207 ntBASIC11.68□□□□□ -0.54
Cdc40Q9DC48 Plekhb1-203ENSMUST00000107044 1806 ntAPPRIS ALT1 TSL 1 (best) BASIC11.68□□□□□ -0.54
Cdc40Q9DC48 Klhdc7b-201ENSMUST00000166926 1818 ntAPPRIS P2 BASIC11.68□□□□□ -0.54
Cdc40Q9DC48 Pdhx-202ENSMUST00000111183 2078 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
Cdc40Q9DC48 Nif3l1-206ENSMUST00000171597 2098 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
Cdc40Q9DC48 Slc39a9-208ENSMUST00000219706 5427 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
Cdc40Q9DC48 Gm15046-201ENSMUST00000130153 408 ntTSL 3 BASIC11.68□□□□□ -0.54
Cdc40Q9DC48 Gm11851-201ENSMUST00000132219 692 ntTSL 5 BASIC11.68□□□□□ -0.54
Cdc40Q9DC48 1700030C14Rik-201ENSMUST00000139912 756 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
Cdc40Q9DC48 S100a14-202ENSMUST00000167598 1059 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
Cdc40Q9DC48 Gm20457-201ENSMUST00000173374 682 ntTSL 3 BASIC11.68□□□□□ -0.54
Cdc40Q9DC48 A930009A15Rik-201ENSMUST00000173620 1001 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
Cdc40Q9DC48 Cdk3-ps-202ENSMUST00000174177 915 ntAPPRIS P1 TSL 5 BASIC11.68□□□□□ -0.54
Cdc40Q9DC48 Gm28085-201ENSMUST00000189281 1137 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
Cdc40Q9DC48 2010310C07Rik-202ENSMUST00000190889 842 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
Cdc40Q9DC48 Gm45865-201ENSMUST00000211815 945 ntBASIC11.68□□□□□ -0.54
Cdc40Q9DC48 Gm31992-201ENSMUST00000213387 862 ntTSL 5 BASIC11.68□□□□□ -0.54
Cdc40Q9DC48 Eaf2-201ENSMUST00000023537 849 ntAPPRIS ALT2 TSL 5 BASIC11.68□□□□□ -0.54
Cdc40Q9DC48 Fgl1-201ENSMUST00000034003 1120 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
Cdc40Q9DC48 Rpl18a-201ENSMUST00000054220 1260 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
Cdc40Q9DC48 Olfr91-201ENSMUST00000087144 939 ntAPPRIS P1 BASIC11.68□□□□□ -0.54
Cdc40Q9DC48 Gm36864-203ENSMUST00000223070 1513 ntAPPRIS P5 TSL 5 BASIC11.68□□□□□ -0.54
Cdc40Q9DC48 Tekt4-201ENSMUST00000025002 1532 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
Cdc40Q9DC48 Pik3cd-206ENSMUST00000122059 4832 ntAPPRIS ALT1 TSL 1 (best) BASIC11.68□□□□□ -0.54
Cdc40Q9DC48 Rnf214-205ENSMUST00000160699 2287 ntAPPRIS P3 TSL 1 (best) BASIC11.68□□□□□ -0.54
Cdc40Q9DC48 M6pr-202ENSMUST00000112610 2539 ntAPPRIS P1 TSL 5 BASIC11.68□□□□□ -0.54
Cdc40Q9DC48 M6pr-201ENSMUST00000007602 2515 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
Cdc40Q9DC48 Cds2-201ENSMUST00000089461 8073 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
Cdc40Q9DC48 Dock6-201ENSMUST00000034728 6467 ntAPPRIS ALT2 TSL 5 BASIC11.68□□□□□ -0.54
Retrieved 100 of 76,532 protein–RNA pairs in 29 ms