Protein–RNA interactions for Protein: Q9D1C8

Vps28, Vacuolar protein sorting-associated protein 28 homolog, mousemouse

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps28Q9D1C8 Asph-202ENSMUST00000078139 6694 ntAPPRIS P3 TSL 1 (best) BASIC12.89□□□□□ -0.35
Vps28Q9D1C8 Slc12a8-206ENSMUST00000122427 2070 ntAPPRIS ALT2 TSL 5 BASIC12.89□□□□□ -0.35
Vps28Q9D1C8 Gm13293-201ENSMUST00000131188 1615 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
Vps28Q9D1C8 Gm28590-201ENSMUST00000185679 1609 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
Vps28Q9D1C8 Kif13b-201ENSMUST00000100473 5603 ntAPPRIS P2 TSL 5 BASIC12.89□□□□□ -0.35
Vps28Q9D1C8 Gcom1-201ENSMUST00000163998 1726 ntAPPRIS P5 TSL 5 BASIC12.89□□□□□ -0.35
Vps28Q9D1C8 Gm33543-203ENSMUST00000211096 1722 ntAPPRIS P5 TSL 5 BASIC12.89□□□□□ -0.35
Vps28Q9D1C8 Vit-201ENSMUST00000024880 2720 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Vps28Q9D1C8 Fibin-201ENSMUST00000099626 2267 ntAPPRIS P1 BASIC12.89□□□□□ -0.35
Vps28Q9D1C8 Hist1h4b-201ENSMUST00000102965 397 ntAPPRIS P1 BASIC12.89□□□□□ -0.35
Vps28Q9D1C8 1700042G07Rik-201ENSMUST00000106492 385 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Vps28Q9D1C8 Gm5638-201ENSMUST00000118618 1258 ntBASIC12.89□□□□□ -0.35
Vps28Q9D1C8 Ggnbp1-202ENSMUST00000122106 1107 ntAPPRIS ALT2 TSL 5 BASIC12.89□□□□□ -0.35
Vps28Q9D1C8 Smim5-201ENSMUST00000131566 700 ntTSL 2 BASIC12.89□□□□□ -0.35
Vps28Q9D1C8 Serf1-203ENSMUST00000132053 516 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
Vps28Q9D1C8 4933407E24Rik-201ENSMUST00000133499 969 ntTSL 2 BASIC12.89□□□□□ -0.35
Vps28Q9D1C8 Gm16296-201ENSMUST00000159905 325 ntBASIC12.89□□□□□ -0.35
Vps28Q9D1C8 A930009A15Rik-201ENSMUST00000173620 1001 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Vps28Q9D1C8 1700120C18Rik-201ENSMUST00000182952 985 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
Vps28Q9D1C8 Gm6621-201ENSMUST00000193251 772 ntBASIC12.89□□□□□ -0.35
Vps28Q9D1C8 1110006O24Rik-201ENSMUST00000201728 768 ntBASIC12.89□□□□□ -0.35
Vps28Q9D1C8 Ifi30-202ENSMUST00000222087 981 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
Vps28Q9D1C8 Ddit3-201ENSMUST00000026475 890 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Vps28Q9D1C8 Mrap-201ENSMUST00000038197 1001 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Vps28Q9D1C8 Cryba4-201ENSMUST00000086629 746 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Vps28Q9D1C8 Dtnb-201ENSMUST00000077930 2376 ntAPPRIS P2 TSL 1 (best) BASIC12.89□□□□□ -0.35
Vps28Q9D1C8 Eif2ak1-201ENSMUST00000100487 4325 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Vps28Q9D1C8 Nek3-201ENSMUST00000033865 2021 ntAPPRIS P3 TSL 1 (best) BASIC12.89□□□□□ -0.35
Vps28Q9D1C8 Shisa3-201ENSMUST00000087241 3760 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Vps28Q9D1C8 Akr1d1-201ENSMUST00000040987 2699 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Vps28Q9D1C8 Cd27-201ENSMUST00000032486 1559 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Vps28Q9D1C8 Acer1-201ENSMUST00000056113 2429 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Vps28Q9D1C8 Gpa33-202ENSMUST00000060833 2515 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Vps28Q9D1C8 Cstf3-201ENSMUST00000028599 2817 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Vps28Q9D1C8 Slc23a4-201ENSMUST00000044387 2175 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
Vps28Q9D1C8 Slc38a10-216ENSMUST00000179094 4052 ntAPPRIS ALT2 TSL 5 BASIC12.88□□□□□ -0.35
Vps28Q9D1C8 Uhrf1bp1-201ENSMUST00000114849 8584 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Vps28Q9D1C8 Cdk11b-201ENSMUST00000067081 2595 ntAPPRIS P3 TSL 1 (best) BASIC12.88□□□□□ -0.35
Vps28Q9D1C8 Hpcal4-202ENSMUST00000106246 1627 ntAPPRIS P1 TSL 5 BASIC12.88□□□□□ -0.35
Vps28Q9D1C8 Gm44089-201ENSMUST00000203624 1930 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
Vps28Q9D1C8 Marco-201ENSMUST00000027639 1925 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Vps28Q9D1C8 Mdm4-201ENSMUST00000067398 1914 ntAPPRIS ALT1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Vps28Q9D1C8 Arid5a-204ENSMUST00000115032 4640 ntAPPRIS P3 TSL 1 (best) BASIC12.88□□□□□ -0.35
Vps28Q9D1C8 Parp3-202ENSMUST00000112479 2030 ntAPPRIS ALT2 TSL 1 (best) BASIC12.88□□□□□ -0.35
Vps28Q9D1C8 Fancc-218ENSMUST00000220684 2006 ntTSL 5 BASIC12.88□□□□□ -0.35
Vps28Q9D1C8 4933427G23Rik-201ENSMUST00000122963 2515 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
Vps28Q9D1C8 Srp54a-202ENSMUST00000220578 4498 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Vps28Q9D1C8 Rbm39-203ENSMUST00000109587 2810 ntAPPRIS P3 TSL 1 (best) BASIC12.88□□□□□ -0.35
Vps28Q9D1C8 Stau1-201ENSMUST00000049412 2840 ntAPPRIS ALT2 TSL 1 (best) BASIC12.88□□□□□ -0.35
Vps28Q9D1C8 Tnfrsf18-202ENSMUST00000103173 1189 ntAPPRIS P4 TSL 1 (best) BASIC12.88□□□□□ -0.35
Vps28Q9D1C8 R3hdml-201ENSMUST00000109416 1094 ntAPPRIS P1 TSL 5 BASIC12.88□□□□□ -0.35
Vps28Q9D1C8 Pigp-205ENSMUST00000113917 805 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
Vps28Q9D1C8 0610037L13Rik-205ENSMUST00000119394 741 ntTSL 3 BASIC12.88□□□□□ -0.35
Vps28Q9D1C8 Creb3-206ENSMUST00000167751 1212 ntAPPRIS ALT2 TSL 5 BASIC12.88□□□□□ -0.35
Vps28Q9D1C8 Gm28638-201ENSMUST00000188152 288 ntTSL 5 BASIC12.88□□□□□ -0.35
Vps28Q9D1C8 Gm45865-201ENSMUST00000211815 945 ntBASIC12.88□□□□□ -0.35
Vps28Q9D1C8 Scoc-203ENSMUST00000212031 409 ntAPPRIS P3 TSL 1 (best) BASIC12.88□□□□□ -0.35
Vps28Q9D1C8 AC155813.1-201ENSMUST00000213224 590 ntTSL 3 BASIC12.88□□□□□ -0.35
Vps28Q9D1C8 Gm33056-201ENSMUST00000213234 1120 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
Vps28Q9D1C8 Ppcdc-207ENSMUST00000214339 738 ntTSL 2 BASIC12.88□□□□□ -0.35
Vps28Q9D1C8 Gm45925-201ENSMUST00000218882 744 ntBASIC12.88□□□□□ -0.35
Vps28Q9D1C8 AC108416.1-202ENSMUST00000228927 1201 ntBASIC12.88□□□□□ -0.35
Vps28Q9D1C8 Olfr171-201ENSMUST00000079891 945 ntAPPRIS P2 BASIC12.88□□□□□ -0.35
Vps28Q9D1C8 Wdr53-201ENSMUST00000023474 1394 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Vps28Q9D1C8 Tonsl-207ENSMUST00000168185 4235 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
Vps28Q9D1C8 Dus2-201ENSMUST00000034375 1860 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Vps28Q9D1C8 Pdhx-202ENSMUST00000111183 2078 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
Vps28Q9D1C8 AC241621.2-201ENSMUST00000223991 2151 ntBASIC12.88□□□□□ -0.35
Vps28Q9D1C8 Cdk5rap3-201ENSMUST00000103152 2250 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Vps28Q9D1C8 Cab39-201ENSMUST00000097666 2369 ntAPPRIS P1 TSL 5 BASIC12.88□□□□□ -0.35
Vps28Q9D1C8 Slc26a5-201ENSMUST00000030878 2962 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Vps28Q9D1C8 Atxn7l3b-201ENSMUST00000099276 3566 ntAPPRIS P1 BASIC12.88□□□□□ -0.35
Vps28Q9D1C8 Gm26905-201ENSMUST00000180798 6621 ntTSL 5 BASIC12.88□□□□□ -0.35
Vps28Q9D1C8 Grip1-202ENSMUST00000077871 3720 ntAPPRIS ALT2 TSL 1 (best) BASIC12.88□□□□□ -0.35
Vps28Q9D1C8 Ncald-211ENSMUST00000168992 3538 ntAPPRIS P1 TSL 5 BASIC12.88□□□□□ -0.35
Vps28Q9D1C8 Ccng1-201ENSMUST00000020576 3512 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Vps28Q9D1C8 Slc6a20a-201ENSMUST00000040960 2732 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Vps28Q9D1C8 Ank3-201ENSMUST00000047061 2517 ntTSL 5 BASIC12.88□□□□□ -0.35
Vps28Q9D1C8 Mypopos-202ENSMUST00000205975 2321 ntBASIC12.88□□□□□ -0.35
Vps28Q9D1C8 Cyp2b10-201ENSMUST00000005477 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC12.88□□□□□ -0.35
Vps28Q9D1C8 Odf3-202ENSMUST00000106049 1509 ntTSL 5 BASIC12.88□□□□□ -0.35
Vps28Q9D1C8 4930550C17Rik-201ENSMUST00000181629 1411 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
Vps28Q9D1C8 Dync1i1-204ENSMUST00000115559 2599 ntAPPRIS P3 TSL 1 (best) BASIC12.87□□□□□ -0.35
Vps28Q9D1C8 Zfp641-201ENSMUST00000023722 4212 ntAPPRIS ALT2 TSL 1 (best) BASIC12.87□□□□□ -0.35
Vps28Q9D1C8 Prickle1-202ENSMUST00000109255 4144 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Vps28Q9D1C8 Zfp64-203ENSMUST00000109162 2848 ntAPPRIS P1 TSL 2 BASIC12.87□□□□□ -0.35
Vps28Q9D1C8 Dhx58os-201ENSMUST00000137154 1594 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
Vps28Q9D1C8 Abca7-203ENSMUST00000171637 6638 ntAPPRIS ALT2 TSL 1 (best) BASIC12.87□□□□□ -0.35
Vps28Q9D1C8 Gm19221-201ENSMUST00000221827 1477 ntBASIC12.87□□□□□ -0.35
Vps28Q9D1C8 Gm26519-201ENSMUST00000181193 2249 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
Vps28Q9D1C8 1700066O22Rik-203ENSMUST00000150994 961 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
Vps28Q9D1C8 Anapc16-205ENSMUST00000182912 566 ntTSL 2 BASIC12.87□□□□□ -0.35
Vps28Q9D1C8 Mocs2-215ENSMUST00000184335 646 ntTSL 5 BASIC12.87□□□□□ -0.35
Vps28Q9D1C8 Gm44405-201ENSMUST00000198952 126 ntBASIC12.87□□□□□ -0.35
Vps28Q9D1C8 4933421D24Rik-201ENSMUST00000209302 1286 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
Vps28Q9D1C8 AC154171.1-201ENSMUST00000224610 643 ntBASIC12.87□□□□□ -0.35
Vps28Q9D1C8 Acbd5-208ENSMUST00000226571 3802 ntAPPRIS ALT2 BASIC12.87□□□□□ -0.35
Vps28Q9D1C8 Snx24-201ENSMUST00000025417 994 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Vps28Q9D1C8 Terb2-201ENSMUST00000028661 2115 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Vps28Q9D1C8 Ebna1bp2-201ENSMUST00000030501 2960 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Retrieved 100 of 76,532 protein–RNA pairs in 57.1 ms