Protein–RNA interactions for Protein: Q8K445

Clrn1, Clarin-1, mousemouse

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clrn1Q8K445 Pnck-203ENSMUST00000114473 1492 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Clrn1Q8K445 4930550L24Rik-201ENSMUST00000062542 1572 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Clrn1Q8K445 Rnf17-202ENSMUST00000223627 2077 ntBASIC11.86□□□□□ -0.51
Clrn1Q8K445 Tspoap1-201ENSMUST00000039627 7616 ntAPPRIS P2 TSL 5 BASIC11.86□□□□□ -0.51
Clrn1Q8K445 Gm14123-201ENSMUST00000156345 2658 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
Clrn1Q8K445 Tgm1-202ENSMUST00000168729 2852 ntAPPRIS P1 TSL 5 BASIC11.86□□□□□ -0.51
Clrn1Q8K445 Mrps35-201ENSMUST00000036111 4162 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Clrn1Q8K445 Smim1-213ENSMUST00000182151 5091 ntAPPRIS P1 TSL 2 BASIC11.86□□□□□ -0.51
Clrn1Q8K445 Arhgef2-203ENSMUST00000170653 4238 ntAPPRIS ALT2 TSL 1 (best) BASIC11.86□□□□□ -0.51
Clrn1Q8K445 Dnm2-206ENSMUST00000172482 2613 ntAPPRIS P4 TSL 5 BASIC11.86□□□□□ -0.51
Clrn1Q8K445 Xrcc3-201ENSMUST00000021715 2422 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Clrn1Q8K445 Slc7a7-209ENSMUST00000226753 2126 ntAPPRIS P1 BASIC11.86□□□□□ -0.51
Clrn1Q8K445 Atp6v1h-201ENSMUST00000044369 2049 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Clrn1Q8K445 4930550C17Rik-201ENSMUST00000181629 1411 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
Clrn1Q8K445 Tk1-201ENSMUST00000026661 1440 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Clrn1Q8K445 Sun2-203ENSMUST00000100439 3768 ntAPPRIS ALT2 TSL 1 (best) BASIC11.86□□□□□ -0.51
Clrn1Q8K445 Ripor3-201ENSMUST00000099073 3580 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Clrn1Q8K445 Fnip2-203ENSMUST00000133154 7299 ntAPPRIS ALT2 TSL 5 BASIC11.85□□□□□ -0.51
Clrn1Q8K445 Scarf1-201ENSMUST00000042808 2887 ntAPPRIS P2 TSL 1 (best) BASIC11.85□□□□□ -0.51
Clrn1Q8K445 Pex1-201ENSMUST00000006061 4433 ntAPPRIS P3 TSL 1 (best) BASIC11.85□□□□□ -0.51
Clrn1Q8K445 Pitpnm2-201ENSMUST00000086123 6620 ntAPPRIS P3 TSL 1 (best) BASIC11.85□□□□□ -0.51
Clrn1Q8K445 2810430I11Rik-201ENSMUST00000154246 3416 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
Clrn1Q8K445 Slc4a3-202ENSMUST00000124341 7182 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Clrn1Q8K445 Plxna1-201ENSMUST00000049845 5810 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Clrn1Q8K445 Nrf1-207ENSMUST00000115206 1879 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Clrn1Q8K445 Vrtn-201ENSMUST00000095551 3028 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Clrn1Q8K445 Cflar-202ENSMUST00000097722 1771 ntAPPRIS ALT2 TSL 5 BASIC11.85□□□□□ -0.51
Clrn1Q8K445 Orc2-201ENSMUST00000027198 3561 ntAPPRIS P4 TSL 1 (best) BASIC11.85□□□□□ -0.51
Clrn1Q8K445 Bcs1l-203ENSMUST00000113733 1488 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Clrn1Q8K445 Elovl3-201ENSMUST00000043739 1494 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Clrn1Q8K445 Camk2d-216ENSMUST00000163226 4204 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
Clrn1Q8K445 Itfg2-201ENSMUST00000001559 2320 ntAPPRIS P2 TSL 1 (best) BASIC11.85□□□□□ -0.51
Clrn1Q8K445 Gm12132-201ENSMUST00000130945 1391 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
Clrn1Q8K445 Psmd13-208ENSMUST00000163610 1382 ntTSL 5 BASIC11.85□□□□□ -0.51
Clrn1Q8K445 Gm37885-201ENSMUST00000192568 1391 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
Clrn1Q8K445 Fgd3-203ENSMUST00000110087 4698 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Clrn1Q8K445 Gm5863-201ENSMUST00000121760 1008 ntBASIC11.85□□□□□ -0.51
Clrn1Q8K445 Haglr-202ENSMUST00000152462 443 ntTSL 2 BASIC11.85□□□□□ -0.51
Clrn1Q8K445 Gm14209-201ENSMUST00000154946 462 ntTSL 5 BASIC11.85□□□□□ -0.51
Clrn1Q8K445 Krtap16-3-201ENSMUST00000179707 601 ntAPPRIS P1 BASIC11.85□□□□□ -0.51
Clrn1Q8K445 Gm42067-201ENSMUST00000209642 647 ntTSL 2 BASIC11.85□□□□□ -0.51
Clrn1Q8K445 AC156504.2-201ENSMUST00000213800 711 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
Clrn1Q8K445 AC153962.4-201ENSMUST00000217878 242 ntBASIC11.85□□□□□ -0.51
Clrn1Q8K445 Gm5781-201ENSMUST00000219792 443 ntBASIC11.85□□□□□ -0.51
Clrn1Q8K445 Dph3-201ENSMUST00000022461 1057 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Clrn1Q8K445 Pcgf5-203ENSMUST00000224679 1269 ntAPPRIS P5 BASIC11.85□□□□□ -0.51
Clrn1Q8K445 Kcnt1-212ENSMUST00000197917 3711 ntAPPRIS ALT2 TSL 5 BASIC11.85□□□□□ -0.51
Clrn1Q8K445 Wscd1-201ENSMUST00000021168 2757 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Clrn1Q8K445 Arhgap22-202ENSMUST00000111956 2596 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Clrn1Q8K445 Pdlim5-206ENSMUST00000195975 1845 ntAPPRIS ALT2 TSL 1 (best) BASIC11.85□□□□□ -0.51
Clrn1Q8K445 Gm9881-201ENSMUST00000068783 3205 ntAPPRIS P1 BASIC11.85□□□□□ -0.51
Clrn1Q8K445 Psd2-201ENSMUST00000115716 4607 ntAPPRIS P3 TSL 1 (best) BASIC11.85□□□□□ -0.51
Clrn1Q8K445 Foxk1-201ENSMUST00000072837 7439 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Clrn1Q8K445 Tekt3-201ENSMUST00000035732 1748 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Clrn1Q8K445 Duox2-201ENSMUST00000053734 5744 ntAPPRIS P1 TSL 2 BASIC11.85□□□□□ -0.51
Clrn1Q8K445 Nfkb1-206ENSMUST00000164430 3007 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Clrn1Q8K445 Rap1gds1-202ENSMUST00000098574 3669 ntAPPRIS P3 TSL 1 (best) BASIC11.85□□□□□ -0.51
Clrn1Q8K445 Gm13293-201ENSMUST00000131188 1615 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
Clrn1Q8K445 Plekhg6-201ENSMUST00000042647 3299 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Clrn1Q8K445 AC153366.2-201ENSMUST00000219461 1984 ntBASIC11.85□□□□□ -0.51
Clrn1Q8K445 Plekhg4-201ENSMUST00000014927 4167 ntAPPRIS P2 TSL 5 BASIC11.85□□□□□ -0.51
Clrn1Q8K445 Slc13a5-201ENSMUST00000021161 3329 ntAPPRIS P2 TSL 1 (best) BASIC11.85□□□□□ -0.51
Clrn1Q8K445 Trappc9-204ENSMUST00000170633 4688 ntAPPRIS ALT2 TSL 1 (best) BASIC11.84□□□□□ -0.51
Clrn1Q8K445 A830018L16Rik-202ENSMUST00000135014 6451 ntAPPRIS ALT2 TSL 1 (best) BASIC11.84□□□□□ -0.51
Clrn1Q8K445 Kpna1-201ENSMUST00000004054 5039 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Clrn1Q8K445 Sh3bp5l-202ENSMUST00000116376 3016 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Clrn1Q8K445 Gm10451-201ENSMUST00000101281 1598 ntTSL 2 BASIC11.84□□□□□ -0.51
Clrn1Q8K445 Prkag3-202ENSMUST00000113672 2003 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
Clrn1Q8K445 Il13ra1-201ENSMUST00000033418 3712 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Clrn1Q8K445 Gm10544-202ENSMUST00000181887 1923 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
Clrn1Q8K445 Ubtf-203ENSMUST00000107115 3199 ntAPPRIS ALT2 TSL 5 BASIC11.84□□□□□ -0.51
Clrn1Q8K445 Nrsn2-201ENSMUST00000079278 1455 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Clrn1Q8K445 Prkar1b-203ENSMUST00000110890 2626 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Clrn1Q8K445 Gsn-205ENSMUST00000201185 2607 ntAPPRIS ALT2 TSL 1 (best) BASIC11.84□□□□□ -0.51
Clrn1Q8K445 Tjap1-201ENSMUST00000012440 2426 ntAPPRIS P2 TSL 1 (best) BASIC11.84□□□□□ -0.51
Clrn1Q8K445 Stx3-203ENSMUST00000075304 2430 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
Clrn1Q8K445 4930581F22Rik-201ENSMUST00000093873 2402 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
Clrn1Q8K445 E130114P18Rik-202ENSMUST00000107068 1132 ntAPPRIS P5 TSL 3 BASIC11.84□□□□□ -0.51
Clrn1Q8K445 Cabp1-203ENSMUST00000112112 746 ntAPPRIS ALT1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Clrn1Q8K445 Gm31728-201ENSMUST00000192164 435 ntTSL 3 BASIC11.84□□□□□ -0.51
Clrn1Q8K445 Gm38293-201ENSMUST00000193209 600 ntTSL 2 BASIC11.84□□□□□ -0.51
Clrn1Q8K445 Ceacam1-209ENSMUST00000206687 1061 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
Clrn1Q8K445 Gm4598-201ENSMUST00000206756 1080 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
Clrn1Q8K445 Mt3-203ENSMUST00000211930 477 ntTSL 2 BASIC11.84□□□□□ -0.51
Clrn1Q8K445 Oit1-201ENSMUST00000022269 1253 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Clrn1Q8K445 Asb9-201ENSMUST00000033756 1139 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Clrn1Q8K445 Krtap19-2-201ENSMUST00000076186 605 ntAPPRIS P1 BASIC11.84□□□□□ -0.51
Clrn1Q8K445 Gm22058-201ENSMUST00000083393 310 ntBASIC11.84□□□□□ -0.51
Clrn1Q8K445 Akp-ps1-201ENSMUST00000188050 1600 ntBASIC11.84□□□□□ -0.51
Clrn1Q8K445 Ctr9-201ENSMUST00000005749 4300 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Clrn1Q8K445 Adam32-201ENSMUST00000119720 2235 ntAPPRIS ALT2 TSL 1 (best) BASIC11.84□□□□□ -0.51
Clrn1Q8K445 Ptpn1-201ENSMUST00000029053 4213 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Clrn1Q8K445 2310035C23Rik-210ENSMUST00000190501 3852 ntAPPRIS ALT2 TSL 1 (best) BASIC11.84□□□□□ -0.51
Clrn1Q8K445 Prpf19-203ENSMUST00000179297 6035 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
Clrn1Q8K445 Bin3-201ENSMUST00000022680 1767 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Clrn1Q8K445 Mrps30-201ENSMUST00000022245 3319 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Clrn1Q8K445 Myo5b-203ENSMUST00000121875 6065 ntAPPRIS ALT2 TSL 5 BASIC11.84□□□□□ -0.51
Clrn1Q8K445 4931429P17Rik-201ENSMUST00000061899 2012 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
Clrn1Q8K445 Usp16-201ENSMUST00000026710 3205 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Clrn1Q8K445 Rps13-203ENSMUST00000205490 1317 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
Retrieved 100 of 76,532 protein–RNA pairs in 59.8 ms