Protein–RNA interactions for Protein: Q8C6K9

Col6a6, Collagen alpha-6(VI) chain, mousemouse

Predictions only

Length 2,265 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col6a6Q8C6K9 4931419H13Rik-201ENSMUST00000199770 973 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
Col6a6Q8C6K9 Gm45598-202ENSMUST00000210719 986 ntBASIC11.32□□□□□ -0.6
Col6a6Q8C6K9 AC153830.1-201ENSMUST00000218522 594 ntTSL 5 BASIC11.32□□□□□ -0.6
Col6a6Q8C6K9 AC154725.1-201ENSMUST00000224826 1961 ntBASIC11.32□□□□□ -0.6
Col6a6Q8C6K9 Dennd2d-201ENSMUST00000029508 4050 ntAPPRIS ALT2 TSL 1 (best) BASIC11.32□□□□□ -0.6
Col6a6Q8C6K9 Rorc-204ENSMUST00000200009 1543 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
Col6a6Q8C6K9 Stx17-201ENSMUST00000064765 1531 ntAPPRIS P1 TSL 5 BASIC11.32□□□□□ -0.6
Col6a6Q8C6K9 Arid4b-203ENSMUST00000110534 5864 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Col6a6Q8C6K9 Pik3cd-201ENSMUST00000038859 4905 ntAPPRIS ALT1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Col6a6Q8C6K9 Chmp4c-201ENSMUST00000029049 6188 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Col6a6Q8C6K9 Chtf18-201ENSMUST00000048054 3214 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Col6a6Q8C6K9 Gtf2ird1-229ENSMUST00000202554 3514 ntAPPRIS ALT2 TSL 1 (best) BASIC11.32□□□□□ -0.6
Col6a6Q8C6K9 Gm7049-201ENSMUST00000223520 1712 ntBASIC11.32□□□□□ -0.6
Col6a6Q8C6K9 Gm42928-201ENSMUST00000197338 3339 ntBASIC11.32□□□□□ -0.6
Col6a6Q8C6K9 Ifnlr1-201ENSMUST00000074408 4182 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Col6a6Q8C6K9 B4galt3-202ENSMUST00000111313 2098 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Col6a6Q8C6K9 Pcdha11-203ENSMUST00000192447 4583 ntAPPRIS ALT2 TSL 1 (best) BASIC11.32□□□□□ -0.6
Col6a6Q8C6K9 Cyp4x1-201ENSMUST00000051400 1524 ntAPPRIS P2 TSL 1 (best) BASIC11.32□□□□□ -0.6
Col6a6Q8C6K9 Rasl12-201ENSMUST00000085453 2390 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Col6a6Q8C6K9 Tfe3-206ENSMUST00000115679 3239 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
Col6a6Q8C6K9 Amz2-203ENSMUST00000103061 1832 ntAPPRIS P2 TSL 1 (best) BASIC11.32□□□□□ -0.6
Col6a6Q8C6K9 Ptges3l-203ENSMUST00000107252 853 ntAPPRIS ALT2 TSL 1 (best) BASIC11.32□□□□□ -0.6
Col6a6Q8C6K9 Skap1-206ENSMUST00000107663 742 ntTSL 3 BASIC11.32□□□□□ -0.6
Col6a6Q8C6K9 R3hdml-201ENSMUST00000109416 1094 ntAPPRIS P1 TSL 5 BASIC11.32□□□□□ -0.6
Col6a6Q8C6K9 Got2-ps1-201ENSMUST00000121655 1293 ntBASIC11.32□□□□□ -0.6
Col6a6Q8C6K9 Nudt6-207ENSMUST00000141438 899 ntTSL 2 BASIC11.32□□□□□ -0.6
Col6a6Q8C6K9 Gm12951-201ENSMUST00000150216 434 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
Col6a6Q8C6K9 Taf9-201ENSMUST00000167256 1230 ntAPPRIS P1 TSL 2 BASIC11.32□□□□□ -0.6
Col6a6Q8C6K9 Gm10069-203ENSMUST00000204081 907 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
Col6a6Q8C6K9 Fam241b-201ENSMUST00000027719 771 ntTSL 3 BASIC11.32□□□□□ -0.6
Col6a6Q8C6K9 Cmtm2a-201ENSMUST00000034344 1081 ntAPPRIS P2 TSL 1 (best) BASIC11.32□□□□□ -0.6
Col6a6Q8C6K9 Map3k9-202ENSMUST00000222322 3303 ntAPPRIS ALT2 TSL 5 BASIC11.31□□□□□ -0.6
Col6a6Q8C6K9 Matn2-206ENSMUST00000228570 2798 ntBASIC11.31□□□□□ -0.6
Col6a6Q8C6K9 Dbn1-201ENSMUST00000021950 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC11.31□□□□□ -0.6
Col6a6Q8C6K9 Nphp4-201ENSMUST00000056567 4583 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Col6a6Q8C6K9 Dnmt3l-201ENSMUST00000000746 1676 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Col6a6Q8C6K9 Apaf1-201ENSMUST00000020157 6577 ntAPPRIS P3 TSL 1 (best) BASIC11.31□□□□□ -0.6
Col6a6Q8C6K9 Rp2-202ENSMUST00000115387 4498 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
Col6a6Q8C6K9 Arhgef2-219ENSMUST00000176500 4492 ntAPPRIS ALT2 TSL 5 BASIC11.31□□□□□ -0.6
Col6a6Q8C6K9 C030034I22Rik-202ENSMUST00000188481 4231 ntBASIC11.31□□□□□ -0.6
Col6a6Q8C6K9 Arntl2-203ENSMUST00000111638 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC11.31□□□□□ -0.6
Col6a6Q8C6K9 Arntl2-201ENSMUST00000080530 1740 ntAPPRIS P3 TSL 1 (best) BASIC11.31□□□□□ -0.6
Col6a6Q8C6K9 Adgrd2-ps-201ENSMUST00000118797 2662 ntBASIC11.31□□□□□ -0.6
Col6a6Q8C6K9 Nfat5-203ENSMUST00000125721 5899 ntAPPRIS ALT2 TSL 5 BASIC11.31□□□□□ -0.6
Col6a6Q8C6K9 Scyl2-201ENSMUST00000092227 3566 ntAPPRIS ALT1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Col6a6Q8C6K9 Lmf1-202ENSMUST00000116641 1858 ntAPPRIS P2 TSL 5 BASIC11.31□□□□□ -0.6
Col6a6Q8C6K9 Lmf1-201ENSMUST00000063344 1861 ntAPPRIS ALT2 TSL 5 BASIC11.31□□□□□ -0.6
Col6a6Q8C6K9 Rbm12b1-201ENSMUST00000050069 2949 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Col6a6Q8C6K9 D330041H03Rik-205ENSMUST00000181014 1903 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
Col6a6Q8C6K9 Pigg-202ENSMUST00000118910 3030 ntTSL 5 BASIC11.31□□□□□ -0.6
Col6a6Q8C6K9 4931414P19Rik-201ENSMUST00000022786 2670 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Col6a6Q8C6K9 Ramp1-201ENSMUST00000097648 2325 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Col6a6Q8C6K9 Gm25881-201ENSMUST00000157783 103 ntBASIC11.31□□□□□ -0.6
Col6a6Q8C6K9 Hsh2d-202ENSMUST00000165324 1238 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Col6a6Q8C6K9 Krtap20-2-201ENSMUST00000169954 528 ntAPPRIS P1 BASIC11.31□□□□□ -0.6
Col6a6Q8C6K9 Gm28760-202ENSMUST00000190376 481 ntTSL 5 BASIC11.31□□□□□ -0.6
Col6a6Q8C6K9 Gm42920-201ENSMUST00000196616 409 ntTSL 3 BASIC11.31□□□□□ -0.6
Col6a6Q8C6K9 AC162938.2-204ENSMUST00000216455 984 ntTSL 5 BASIC11.31□□□□□ -0.6
Col6a6Q8C6K9 Med27-201ENSMUST00000028139 1254 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Col6a6Q8C6K9 Elovl1-202ENSMUST00000067896 1137 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Col6a6Q8C6K9 Aamdc-202ENSMUST00000072725 776 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
Col6a6Q8C6K9 Trappc9-203ENSMUST00000168191 3127 ntAPPRIS ALT2 TSL 1 (best) BASIC11.31□□□□□ -0.6
Col6a6Q8C6K9 Ushbp1-201ENSMUST00000049184 2438 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Col6a6Q8C6K9 Prrg3-203ENSMUST00000170096 3408 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Col6a6Q8C6K9 Pisd-ps2-201ENSMUST00000127960 1424 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
Col6a6Q8C6K9 Cacna1g-205ENSMUST00000107786 7984 ntAPPRIS ALT2 TSL 1 (best) BASIC11.31□□□□□ -0.6
Col6a6Q8C6K9 Cacna1g-210ENSMUST00000107792 7981 ntAPPRIS ALT2 TSL 5 BASIC11.31□□□□□ -0.6
Col6a6Q8C6K9 Qsox1-202ENSMUST00000111764 2722 ntAPPRIS ALT2 TSL 1 (best) BASIC11.31□□□□□ -0.6
Col6a6Q8C6K9 AC159308.2-201ENSMUST00000213592 2325 ntBASIC11.31□□□□□ -0.6
Col6a6Q8C6K9 Rad9b-202ENSMUST00000117263 2371 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
Col6a6Q8C6K9 Tekt4-201ENSMUST00000025002 1532 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Col6a6Q8C6K9 Spry2-201ENSMUST00000022709 2087 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Col6a6Q8C6K9 Zmiz1os1-201ENSMUST00000156682 3469 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
Col6a6Q8C6K9 Gm9195-201ENSMUST00000208955 8870 ntAPPRIS P1 TSL 5 BASIC11.3□□□□□ -0.6
Col6a6Q8C6K9 Gm26599-201ENSMUST00000180590 3189 ntTSL 5 BASIC11.3□□□□□ -0.6
Col6a6Q8C6K9 Hsd17b10-202ENSMUST00000112617 992 ntTSL 5 BASIC11.3□□□□□ -0.6
Col6a6Q8C6K9 Gm11892-201ENSMUST00000117711 1202 ntBASIC11.3□□□□□ -0.6
Col6a6Q8C6K9 Gm21976-204ENSMUST00000186911 528 ntTSL 5 BASIC11.3□□□□□ -0.6
Col6a6Q8C6K9 Gm28071-201ENSMUST00000190355 478 ntBASIC11.3□□□□□ -0.6
Col6a6Q8C6K9 Gm8365-201ENSMUST00000197334 648 ntBASIC11.3□□□□□ -0.6
Col6a6Q8C6K9 Gm40652-201ENSMUST00000218944 895 ntTSL 5 BASIC11.3□□□□□ -0.6
Col6a6Q8C6K9 Gm21027-201ENSMUST00000219300 1236 ntBASIC11.3□□□□□ -0.6
Col6a6Q8C6K9 AC131743.2-201ENSMUST00000221031 968 ntTSL 5 BASIC11.3□□□□□ -0.6
Col6a6Q8C6K9 Gm25517-201ENSMUST00000083865 134 ntBASIC11.3□□□□□ -0.6
Col6a6Q8C6K9 Gm21811-201ENSMUST00000096485 930 ntBASIC11.3□□□□□ -0.6
Col6a6Q8C6K9 Olfr139-204ENSMUST00000214111 1311 ntAPPRIS P1 TSL 5 BASIC11.3□□□□□ -0.6
Col6a6Q8C6K9 Ppip5k2-201ENSMUST00000042509 5882 ntAPPRIS P2 TSL 1 (best) BASIC11.3□□□□□ -0.6
Col6a6Q8C6K9 Zfp365-201ENSMUST00000064656 4259 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Col6a6Q8C6K9 Prss23-201ENSMUST00000041761 3228 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Col6a6Q8C6K9 Trim50-202ENSMUST00000111180 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC11.3□□□□□ -0.6
Col6a6Q8C6K9 Srfbp1-201ENSMUST00000025406 1463 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Col6a6Q8C6K9 Wbp11-201ENSMUST00000116514 2739 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Col6a6Q8C6K9 Tbata-201ENSMUST00000035894 1506 ntAPPRIS P3 TSL 5 BASIC11.3□□□□□ -0.6
Col6a6Q8C6K9 Zeb2-212ENSMUST00000176438 9124 ntAPPRIS P2 TSL 5 BASIC11.3□□□□□ -0.6
Col6a6Q8C6K9 Ppil2-212ENSMUST00000164458 2230 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Col6a6Q8C6K9 Vps26b-201ENSMUST00000034470 3575 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Col6a6Q8C6K9 Gpr155-202ENSMUST00000076463 5061 ntAPPRIS P3 TSL 1 (best) BASIC11.3□□□□□ -0.6
Col6a6Q8C6K9 Tcf4-204ENSMUST00000114978 2437 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
Col6a6Q8C6K9 4930453N24Rik-201ENSMUST00000076991 5522 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Col6a6Q8C6K9 Myo9b-203ENSMUST00000170242 7297 ntAPPRIS ALT2 TSL 5 BASIC11.3□□□□□ -0.6
Retrieved 100 of 76,532 protein–RNA pairs in 33.7 ms