Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Zfp740-201ENSMUST00000118729 4241 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
Usp40Q8BWR4 Grm2-201ENSMUST00000023959 4711 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
Usp40Q8BWR4 Nr3c1-203ENSMUST00000115567 6436 ntAPPRIS P2 TSL 1 (best) BASIC17.16■□□□□ 0.34
Usp40Q8BWR4 Cldn15-202ENSMUST00000111093 1902 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
Usp40Q8BWR4 Slc7a15-201ENSMUST00000036938 1907 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
Usp40Q8BWR4 Pmp2-201ENSMUST00000029034 1408 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Usp40Q8BWR4 Mpped1-203ENSMUST00000109470 3281 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Usp40Q8BWR4 Cdk2ap1-204ENSMUST00000111474 1286 ntAPPRIS ALT1 TSL 2 BASIC17.16■□□□□ 0.34
Usp40Q8BWR4 Odf4-202ENSMUST00000125134 646 ntTSL 3 BASIC17.16■□□□□ 0.34
Usp40Q8BWR4 Pabpc1l2a-ps-201ENSMUST00000128361 513 ntBASIC17.16■□□□□ 0.34
Usp40Q8BWR4 Immp2l-202ENSMUST00000132121 1147 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
Usp40Q8BWR4 Gm38304-201ENSMUST00000161826 600 ntTSL 3 BASIC17.16■□□□□ 0.34
Usp40Q8BWR4 Gm18734-201ENSMUST00000172937 808 ntBASIC17.16■□□□□ 0.34
Usp40Q8BWR4 Gm33222-201ENSMUST00000193725 654 ntTSL 3 BASIC17.16■□□□□ 0.34
Usp40Q8BWR4 Gm43947-201ENSMUST00000203019 959 ntBASIC17.16■□□□□ 0.34
Usp40Q8BWR4 AC153974.2-201ENSMUST00000218577 1025 ntBASIC17.16■□□□□ 0.34
Usp40Q8BWR4 Ankrd2-201ENSMUST00000026172 1100 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Usp40Q8BWR4 S100a1-201ENSMUST00000060738 677 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Usp40Q8BWR4 Gm18227-201ENSMUST00000211082 1468 ntBASIC17.16■□□□□ 0.34
Usp40Q8BWR4 Tbc1d9b-201ENSMUST00000093138 4407 ntAPPRIS P3 TSL 1 (best) BASIC17.16■□□□□ 0.34
Usp40Q8BWR4 Galnt6-202ENSMUST00000159715 3796 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Usp40Q8BWR4 Phyhd1-212ENSMUST00000154647 1678 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Usp40Q8BWR4 Sp6-202ENSMUST00000107622 3621 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Usp40Q8BWR4 Sstr5-202ENSMUST00000165183 2581 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Usp40Q8BWR4 Rnf10-202ENSMUST00000112096 3112 ntAPPRIS P3 TSL 1 (best) BASIC17.16■□□□□ 0.34
Usp40Q8BWR4 Tnk2-201ENSMUST00000115120 2794 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
Usp40Q8BWR4 Cacng3-201ENSMUST00000084615 2777 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Usp40Q8BWR4 Fancc-202ENSMUST00000099444 2288 ntTSL 5 BASIC17.16■□□□□ 0.34
Usp40Q8BWR4 Ttc3-201ENSMUST00000117648 7417 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
Usp40Q8BWR4 Atg7-210ENSMUST00000182793 2459 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
Usp40Q8BWR4 Mrap2-201ENSMUST00000049457 1931 ntAPPRIS P1 TSL 3 BASIC17.15■□□□□ 0.34
Usp40Q8BWR4 Vmn1r65-201ENSMUST00000086338 2682 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Usp40Q8BWR4 Steap2-203ENSMUST00000115425 4550 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Usp40Q8BWR4 Hnf1b-202ENSMUST00000108113 2376 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Usp40Q8BWR4 Plch2-210ENSMUST00000176194 5619 ntAPPRIS ALT2 TSL 5 BASIC17.15■□□□□ 0.34
Usp40Q8BWR4 Sgce-209ENSMUST00000133306 1619 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Usp40Q8BWR4 Ebna1bp2-201ENSMUST00000030501 2960 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Usp40Q8BWR4 Osbpl8-202ENSMUST00000105275 7204 ntAPPRIS ALT1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Usp40Q8BWR4 Col1a2-201ENSMUST00000031668 5348 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Usp40Q8BWR4 Rpl36-ps10-201ENSMUST00000117431 216 ntBASIC17.15■□□□□ 0.34
Usp40Q8BWR4 Gm12589-201ENSMUST00000153767 638 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Usp40Q8BWR4 Gm23699-201ENSMUST00000158835 135 ntBASIC17.15■□□□□ 0.34
Usp40Q8BWR4 Dleu2-205ENSMUST00000182325 463 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Usp40Q8BWR4 Dleu2-212ENSMUST00000183079 535 ntTSL 3 BASIC17.15■□□□□ 0.34
Usp40Q8BWR4 Gm28071-201ENSMUST00000190355 478 ntBASIC17.15■□□□□ 0.34
Usp40Q8BWR4 Gm44100-201ENSMUST00000204329 436 ntBASIC17.15■□□□□ 0.34
Usp40Q8BWR4 Gm39460-201ENSMUST00000215728 1266 ntTSL 5 BASIC17.15■□□□□ 0.34
Usp40Q8BWR4 AC131330.1-201ENSMUST00000227814 1015 ntBASIC17.15■□□□□ 0.34
Usp40Q8BWR4 Trim50-202ENSMUST00000111180 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
Usp40Q8BWR4 Mettl8-202ENSMUST00000100037 2254 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
Usp40Q8BWR4 AC154747.3-201ENSMUST00000224471 3470 ntBASIC17.15■□□□□ 0.34
Usp40Q8BWR4 Pcsk5-201ENSMUST00000025618 6675 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
Usp40Q8BWR4 Sp9-201ENSMUST00000090813 4514 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Usp40Q8BWR4 Lsp1-205ENSMUST00000105968 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
Usp40Q8BWR4 Sall4-201ENSMUST00000029061 5073 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Usp40Q8BWR4 Zfp276-201ENSMUST00000001092 4071 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Usp40Q8BWR4 Ccdc8-201ENSMUST00000094805 4809 ntAPPRIS P1 BASIC17.14■□□□□ 0.34
Usp40Q8BWR4 Eaf1-201ENSMUST00000022446 4918 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Usp40Q8BWR4 Zbtb7b-201ENSMUST00000029677 3851 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Usp40Q8BWR4 Luc7l-201ENSMUST00000025023 1686 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
Usp40Q8BWR4 Endov-202ENSMUST00000106244 5070 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Usp40Q8BWR4 Olfr533-206ENSMUST00000217179 2825 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
Usp40Q8BWR4 Pax6-202ENSMUST00000090397 3069 ntAPPRIS ALT1 TSL 5 BASIC17.14■□□□□ 0.33
Usp40Q8BWR4 Folr1-201ENSMUST00000106981 960 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Usp40Q8BWR4 Folr1-202ENSMUST00000106982 1039 ntAPPRIS P1 TSL 3 BASIC17.14■□□□□ 0.33
Usp40Q8BWR4 Mageb17-ps-201ENSMUST00000117902 919 ntBASIC17.14■□□□□ 0.33
Usp40Q8BWR4 Mdk-ps1-201ENSMUST00000119782 321 ntBASIC17.14■□□□□ 0.33
Usp40Q8BWR4 Gm14249-201ENSMUST00000156239 1017 ntTSL 5 BASIC17.14■□□□□ 0.33
Usp40Q8BWR4 Gm29087-201ENSMUST00000186462 645 ntTSL 5 BASIC17.14■□□□□ 0.33
Usp40Q8BWR4 Gm43378-201ENSMUST00000199336 582 ntBASIC17.14■□□□□ 0.33
Usp40Q8BWR4 Krtap19-1-201ENSMUST00000081334 493 ntAPPRIS P1 BASIC17.14■□□□□ 0.33
Usp40Q8BWR4 Dct-201ENSMUST00000022725 2202 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Usp40Q8BWR4 Lrrfip2-213ENSMUST00000216430 1525 ntTSL 5 BASIC17.14■□□□□ 0.33
Usp40Q8BWR4 Setdb2-201ENSMUST00000095775 3034 ntAPPRIS ALT2 TSL 5 BASIC17.14■□□□□ 0.33
Usp40Q8BWR4 Pfkfb3-213ENSMUST00000171188 2058 ntTSL 5 BASIC17.14■□□□□ 0.33
Usp40Q8BWR4 Hmga2-203ENSMUST00000159699 3810 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
Usp40Q8BWR4 Atg16l1-203ENSMUST00000113190 3102 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
Usp40Q8BWR4 Pepd-201ENSMUST00000075068 1881 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Usp40Q8BWR4 Unc5b-203ENSMUST00000218637 3653 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
Usp40Q8BWR4 5830432E09Rik-203ENSMUST00000210953 2428 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Usp40Q8BWR4 Prnd-203ENSMUST00000110171 1938 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Usp40Q8BWR4 Gm44929-202ENSMUST00000209134 1653 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Usp40Q8BWR4 Tk1-201ENSMUST00000026661 1440 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Usp40Q8BWR4 Clca2-203ENSMUST00000198993 2774 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
Usp40Q8BWR4 Spata21-201ENSMUST00000051907 2526 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Usp40Q8BWR4 Cd8b1-201ENSMUST00000065248 1483 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Usp40Q8BWR4 Arl11-202ENSMUST00000224727 2095 ntAPPRIS P1 BASIC17.13■□□□□ 0.33
Usp40Q8BWR4 Pdgfc-201ENSMUST00000029652 3521 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Usp40Q8BWR4 Ucp3-202ENSMUST00000107059 1260 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
Usp40Q8BWR4 Tm2d3-203ENSMUST00000107495 1003 ntAPPRIS P4 TSL 5 BASIC17.13■□□□□ 0.33
Usp40Q8BWR4 Gm15515-201ENSMUST00000117827 822 ntBASIC17.13■□□□□ 0.33
Usp40Q8BWR4 Gm1667-201ENSMUST00000151651 558 ntTSL 3 BASIC17.13■□□□□ 0.33
Usp40Q8BWR4 Gm43962-201ENSMUST00000203898 190 ntBASIC17.13■□□□□ 0.33
Usp40Q8BWR4 4930448A20Rik-201ENSMUST00000205988 1034 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Usp40Q8BWR4 AC160052.1-201ENSMUST00000213173 1248 ntTSL 5 BASIC17.13■□□□□ 0.33
Usp40Q8BWR4 Dhrs4-202ENSMUST00000226168 828 ntBASIC17.13■□□□□ 0.33
Usp40Q8BWR4 Wipf3-201ENSMUST00000126637 4414 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
Usp40Q8BWR4 Ccndbp1-201ENSMUST00000060455 1569 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
Usp40Q8BWR4 Cct5-201ENSMUST00000022842 1853 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Usp40Q8BWR4 Rnf214-201ENSMUST00000058720 3964 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
Retrieved 100 of 76,532 protein–RNA pairs in 30.5 ms