Protein–RNA interactions for Protein: Q8BI79

Ccdc40, Coiled-coil domain-containing protein 40, mousemouse

Predictions only

Length 1,192 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc40Q8BI79 Thpo-201ENSMUST00000076422 1587 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Ccdc40Q8BI79 Krt17-201ENSMUST00000080893 1551 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Ccdc40Q8BI79 Pik3cd-203ENSMUST00000105689 3132 ntAPPRIS ALT1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Ccdc40Q8BI79 Tmem237-202ENSMUST00000094917 1869 ntAPPRIS P4 TSL 1 (best) BASIC13.18□□□□□ -0.3
Ccdc40Q8BI79 Slc23a4-201ENSMUST00000044387 2175 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Ccdc40Q8BI79 Tcf7l2-207ENSMUST00000111653 2629 ntAPPRIS ALT2 TSL 2 BASIC13.18□□□□□ -0.3
Ccdc40Q8BI79 Ube2j2-204ENSMUST00000105582 1394 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Ccdc40Q8BI79 Alkbh3-202ENSMUST00000111240 1395 ntTSL 5 BASIC13.18□□□□□ -0.3
Ccdc40Q8BI79 Sidt1-205ENSMUST00000136381 4404 ntAPPRIS P3 TSL 1 (best) BASIC13.18□□□□□ -0.3
Ccdc40Q8BI79 Oit3-201ENSMUST00000009798 2717 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Ccdc40Q8BI79 Sacs-202ENSMUST00000119509 3468 ntAPPRIS ALT2 TSL 5 BASIC13.18□□□□□ -0.3
Ccdc40Q8BI79 Ercc5-201ENSMUST00000027214 3907 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Ccdc40Q8BI79 Fbn1-202ENSMUST00000103234 11971 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Ccdc40Q8BI79 Fgfr3-209ENSMUST00000164207 4150 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
Ccdc40Q8BI79 Ubqln1-202ENSMUST00000076454 3561 ntAPPRIS P3 TSL 1 (best) BASIC13.17□□□□□ -0.3
Ccdc40Q8BI79 Slc46a2-201ENSMUST00000030081 2833 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Ccdc40Q8BI79 Intu-202ENSMUST00000091186 6387 ntAPPRIS P2 TSL 1 (best) BASIC13.17□□□□□ -0.3
Ccdc40Q8BI79 H1fnt-201ENSMUST00000060855 1326 ntAPPRIS P1 BASIC13.17□□□□□ -0.3
Ccdc40Q8BI79 Dnm2-201ENSMUST00000072362 3502 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
Ccdc40Q8BI79 Gm26819-201ENSMUST00000180656 5128 ntTSL 5 BASIC13.17□□□□□ -0.3
Ccdc40Q8BI79 Ccdc114-201ENSMUST00000038720 2460 ntAPPRIS P2 TSL 1 (best) BASIC13.17□□□□□ -0.3
Ccdc40Q8BI79 Rgma-202ENSMUST00000119206 3481 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Ccdc40Q8BI79 Spop-202ENSMUST00000107724 2881 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Ccdc40Q8BI79 Palld-204ENSMUST00000121785 6349 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
Ccdc40Q8BI79 Poc1b-201ENSMUST00000020113 2862 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Ccdc40Q8BI79 Ippk-201ENSMUST00000021817 2856 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Ccdc40Q8BI79 Zcchc11-202ENSMUST00000097925 5865 ntAPPRIS ALT2 TSL 5 BASIC13.17□□□□□ -0.3
Ccdc40Q8BI79 Nr5a2-202ENSMUST00000168126 3446 ntTSL 5 BASIC13.17□□□□□ -0.3
Ccdc40Q8BI79 Cldn9-201ENSMUST00000085989 1435 ntAPPRIS P1 BASIC13.17□□□□□ -0.3
Ccdc40Q8BI79 Gm11478-201ENSMUST00000117851 599 ntBASIC13.17□□□□□ -0.3
Ccdc40Q8BI79 Oaz2-ps-201ENSMUST00000121735 537 ntBASIC13.17□□□□□ -0.3
Ccdc40Q8BI79 Gm2231-201ENSMUST00000125661 612 ntBASIC13.17□□□□□ -0.3
Ccdc40Q8BI79 Gm20521-201ENSMUST00000134077 1245 ntAPPRIS P1 TSL 5 BASIC13.17□□□□□ -0.3
Ccdc40Q8BI79 Pla2g10os-201ENSMUST00000141172 174 ntTSL 5 BASIC13.17□□□□□ -0.3
Ccdc40Q8BI79 Mturn-202ENSMUST00000187701 503 ntTSL 5 BASIC13.17□□□□□ -0.3
Ccdc40Q8BI79 Sec14l4-201ENSMUST00000019512 2956 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Ccdc40Q8BI79 Fxr1-204ENSMUST00000197694 2129 ntAPPRIS P1 TSL 5 BASIC13.17□□□□□ -0.3
Ccdc40Q8BI79 Gm42906-201ENSMUST00000202365 408 ntAPPRIS P1 TSL 5 BASIC13.17□□□□□ -0.3
Ccdc40Q8BI79 Nudt17-201ENSMUST00000029742 1039 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Ccdc40Q8BI79 Rpl28-201ENSMUST00000032597 1106 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Ccdc40Q8BI79 Mrps17-201ENSMUST00000042191 832 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Ccdc40Q8BI79 Rpl13a-ps1-201ENSMUST00000071866 612 ntAPPRIS P1 BASIC13.17□□□□□ -0.3
Ccdc40Q8BI79 Ifitm10-202ENSMUST00000084412 1158 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
Ccdc40Q8BI79 Snap23-201ENSMUST00000028743 2658 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Ccdc40Q8BI79 Wdr18-201ENSMUST00000045247 3911 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Ccdc40Q8BI79 Arvcf-201ENSMUST00000090103 4620 ntAPPRIS P3 TSL 1 (best) BASIC13.17□□□□□ -0.3
Ccdc40Q8BI79 Gtf2e1-201ENSMUST00000023525 3084 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Ccdc40Q8BI79 Spata33-202ENSMUST00000212161 2941 ntTSL 2 BASIC13.17□□□□□ -0.3
Ccdc40Q8BI79 Ormdl1-201ENSMUST00000027266 1910 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Ccdc40Q8BI79 Pnpla6-202ENSMUST00000111070 4496 ntAPPRIS P1 TSL 5 BASIC13.17□□□□□ -0.3
Ccdc40Q8BI79 Slc36a1-202ENSMUST00000108867 1611 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Ccdc40Q8BI79 Sgsm3-208ENSMUST00000139517 2996 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Ccdc40Q8BI79 Sfxn3-201ENSMUST00000062213 2966 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Ccdc40Q8BI79 Set-202ENSMUST00000102866 2824 ntAPPRIS P3 TSL 1 (best) BASIC13.17□□□□□ -0.3
Ccdc40Q8BI79 Ttll12-201ENSMUST00000016901 3220 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Ccdc40Q8BI79 Arhgap12-211ENSMUST00000182383 2500 ntAPPRIS ALT2 TSL 5 BASIC13.16□□□□□ -0.3
Ccdc40Q8BI79 Rapgef3-204ENSMUST00000128775 3586 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Ccdc40Q8BI79 Trip4-201ENSMUST00000117083 1999 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Ccdc40Q8BI79 Rnf43-203ENSMUST00000121782 2640 ntTSL 5 BASIC13.16□□□□□ -0.3
Ccdc40Q8BI79 Ildr1-203ENSMUST00000119464 2878 ntAPPRIS P3 TSL 1 (best) BASIC13.16□□□□□ -0.3
Ccdc40Q8BI79 Pyroxd2-201ENSMUST00000076505 3119 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Ccdc40Q8BI79 Pcdhb22-202ENSMUST00000192409 6609 ntAPPRIS P1 BASIC13.16□□□□□ -0.3
Ccdc40Q8BI79 Shank2-202ENSMUST00000105900 8169 ntTSL 5 BASIC13.16□□□□□ -0.3
Ccdc40Q8BI79 Mbd1-202ENSMUST00000224047 2838 ntAPPRIS P1 BASIC13.16□□□□□ -0.3
Ccdc40Q8BI79 Hexim2-201ENSMUST00000062530 1910 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Ccdc40Q8BI79 Arhgef2-206ENSMUST00000175779 3065 ntAPPRIS ALT2 TSL 5 BASIC13.16□□□□□ -0.3
Ccdc40Q8BI79 Atp8a1-202ENSMUST00000072971 7154 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Ccdc40Q8BI79 Camp-201ENSMUST00000112022 758 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Ccdc40Q8BI79 Hypk-204ENSMUST00000126764 961 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Ccdc40Q8BI79 Gm16136-203ENSMUST00000162520 1121 ntTSL 2 BASIC13.16□□□□□ -0.3
Ccdc40Q8BI79 Ccdc70-201ENSMUST00000017193 1054 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Ccdc40Q8BI79 Pde4b-210ENSMUST00000172616 823 ntTSL 5 BASIC13.16□□□□□ -0.3
Ccdc40Q8BI79 Gm8652-201ENSMUST00000181363 964 ntBASIC13.16□□□□□ -0.3
Ccdc40Q8BI79 Hax1-207ENSMUST00000198782 855 ntAPPRIS ALT2 TSL 5 BASIC13.16□□□□□ -0.3
Ccdc40Q8BI79 Alkbh7-202ENSMUST00000074141 736 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Ccdc40Q8BI79 Cdc37l1-208ENSMUST00000225310 4079 ntAPPRIS ALT2 BASIC13.16□□□□□ -0.3
Ccdc40Q8BI79 Sec16a-202ENSMUST00000114082 8797 ntAPPRIS ALT2 TSL 5 BASIC13.16□□□□□ -0.3
Ccdc40Q8BI79 Gm36864-203ENSMUST00000223070 1513 ntAPPRIS P5 TSL 5 BASIC13.16□□□□□ -0.3
Ccdc40Q8BI79 Tufm-202ENSMUST00000106392 1754 ntTSL 2 BASIC13.16□□□□□ -0.3
Ccdc40Q8BI79 Bbs4-201ENSMUST00000026265 2518 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Ccdc40Q8BI79 Atg2b-201ENSMUST00000041055 7546 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Ccdc40Q8BI79 Clpx-201ENSMUST00000015501 2885 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Ccdc40Q8BI79 D030068K23Rik-201ENSMUST00000180382 2617 ntTSL 2 BASIC13.16□□□□□ -0.3
Ccdc40Q8BI79 Igsf23-204ENSMUST00000208974 1850 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
Ccdc40Q8BI79 Cyb5rl-201ENSMUST00000030364 2360 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Ccdc40Q8BI79 Rin3-201ENSMUST00000056950 3892 ntAPPRIS P3 TSL 1 (best) BASIC13.16□□□□□ -0.3
Ccdc40Q8BI79 Ackr4-202ENSMUST00000076147 2389 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Ccdc40Q8BI79 Nisch-213ENSMUST00000168206 4990 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Ccdc40Q8BI79 Flnc-202ENSMUST00000101617 8939 ntAPPRIS ALT1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Ccdc40Q8BI79 Aqp8-201ENSMUST00000033023 1487 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
Ccdc40Q8BI79 Actc1-201ENSMUST00000090269 1473 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Ccdc40Q8BI79 Rbm14-201ENSMUST00000006625 3165 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Ccdc40Q8BI79 Gart-201ENSMUST00000023684 3518 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Ccdc40Q8BI79 Poldip3-201ENSMUST00000058793 3297 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Ccdc40Q8BI79 Smtn-204ENSMUST00000110011 3020 ntAPPRIS ALT2 TSL 5 BASIC13.15□□□□□ -0.3
Ccdc40Q8BI79 Larp4-202ENSMUST00000100206 6523 ntAPPRIS P3 TSL 1 (best) BASIC13.15□□□□□ -0.3
Ccdc40Q8BI79 Urgcp-202ENSMUST00000093362 5089 ntAPPRIS P4 TSL 1 (best) BASIC13.15□□□□□ -0.3
Ccdc40Q8BI79 Arhgef40-202ENSMUST00000100639 4843 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.3
Ccdc40Q8BI79 Fut8-201ENSMUST00000062804 3358 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Ccdc40Q8BI79 Ninj1-202ENSMUST00000120733 1321 ntTSL 5 BASIC13.15□□□□□ -0.3
Retrieved 100 of 76,532 protein–RNA pairs in 73.4 ms