Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Cd200r1-201ENSMUST00000057488 1892 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Trim56Q80VI1 Gm17435-202ENSMUST00000212699 1998 ntBASIC14.8□□□□□ -0.04
Trim56Q80VI1 Kars-202ENSMUST00000093120 2131 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
Trim56Q80VI1 Rabep2-202ENSMUST00000106407 2234 ntAPPRIS P2 TSL 1 (best) BASIC14.8□□□□□ -0.04
Trim56Q80VI1 Otub2-201ENSMUST00000021620 2791 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Trim56Q80VI1 Ralgps2-209ENSMUST00000189316 2924 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
Trim56Q80VI1 Cdc26-202ENSMUST00000107459 654 ntAPPRIS P1 TSL 2 BASIC14.79□□□□□ -0.04
Trim56Q80VI1 Fitm2-201ENSMUST00000109418 3967 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Trim56Q80VI1 Gm9083-201ENSMUST00000120423 819 ntBASIC14.79□□□□□ -0.04
Trim56Q80VI1 Tmem56-204ENSMUST00000135818 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
Trim56Q80VI1 1700003G18Rik-201ENSMUST00000140689 633 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
Trim56Q80VI1 Hnf4aos-203ENSMUST00000141329 839 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
Trim56Q80VI1 Slc5a11-207ENSMUST00000167299 2022 ntAPPRIS P1 TSL 5 BASIC14.79□□□□□ -0.04
Trim56Q80VI1 Gm29585-203ENSMUST00000188089 835 ntTSL 5 BASIC14.79□□□□□ -0.04
Trim56Q80VI1 Pex1-208ENSMUST00000195894 528 ntTSL 3 BASIC14.79□□□□□ -0.04
Trim56Q80VI1 Ncln-201ENSMUST00000020463 3118 ntAPPRIS P2 TSL 1 (best) BASIC14.79□□□□□ -0.04
Trim56Q80VI1 Gm44260-201ENSMUST00000204946 2094 ntBASIC14.79□□□□□ -0.04
Trim56Q80VI1 Gm38979-201ENSMUST00000207099 698 ntTSL 3 BASIC14.79□□□□□ -0.04
Trim56Q80VI1 Gm39929-201ENSMUST00000209672 693 ntTSL 3 BASIC14.79□□□□□ -0.04
Trim56Q80VI1 Mrps30-201ENSMUST00000022245 3319 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Trim56Q80VI1 Calcoco1-201ENSMUST00000023818 2822 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Trim56Q80VI1 Psmb2-201ENSMUST00000030642 859 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Trim56Q80VI1 Tmem200a-201ENSMUST00000066049 4115 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Trim56Q80VI1 Gm24136-201ENSMUST00000083374 165 ntBASIC14.79□□□□□ -0.04
Trim56Q80VI1 Trpt1-201ENSMUST00000088223 1142 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Trim56Q80VI1 Ggn-202ENSMUST00000098609 2653 ntAPPRIS P2 TSL 1 (best) BASIC14.79□□□□□ -0.04
Trim56Q80VI1 Tnks1bp1-201ENSMUST00000048400 4799 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
Trim56Q80VI1 Rsbn1-201ENSMUST00000051139 4762 ntAPPRIS P2 TSL 1 (best) BASIC14.79□□□□□ -0.04
Trim56Q80VI1 Spag1-201ENSMUST00000047348 3646 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Trim56Q80VI1 Cd163l1-203ENSMUST00000209398 3437 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
Trim56Q80VI1 Cyp4f17-201ENSMUST00000165999 1693 ntAPPRIS P1 TSL 5 BASIC14.78□□□□□ -0.04
Trim56Q80VI1 Lig3-202ENSMUST00000080461 3056 ntTSL 5 BASIC14.78□□□□□ -0.04
Trim56Q80VI1 Setdb2-205ENSMUST00000161459 2995 ntAPPRIS P2 TSL 1 (best) BASIC14.78□□□□□ -0.04
Trim56Q80VI1 Gm10578-202ENSMUST00000211070 2876 ntTSL 2 BASIC14.78□□□□□ -0.04
Trim56Q80VI1 Tsc2-217ENSMUST00000227745 5598 ntAPPRIS ALT2 BASIC14.78□□□□□ -0.04
Trim56Q80VI1 Mapk8ip3-206ENSMUST00000120035 4125 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
Trim56Q80VI1 Grb2-203ENSMUST00000106497 2683 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Trim56Q80VI1 1520401A03Rik-205ENSMUST00000201734 2660 ntAPPRIS P5 TSL 5 BASIC14.78□□□□□ -0.04
Trim56Q80VI1 Gm6370-201ENSMUST00000110611 1142 ntAPPRIS P2 TSL 5 BASIC14.78□□□□□ -0.04
Trim56Q80VI1 Cspp1-202ENSMUST00000117415 1272 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
Trim56Q80VI1 Gm11755-201ENSMUST00000144096 891 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
Trim56Q80VI1 C8g-201ENSMUST00000015227 822 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
Trim56Q80VI1 Lage3-201ENSMUST00000015433 761 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Trim56Q80VI1 Gm6309-201ENSMUST00000174320 1154 ntAPPRIS P1 TSL 5 BASIC14.78□□□□□ -0.04
Trim56Q80VI1 Gm20482-202ENSMUST00000174729 825 ntBASIC14.78□□□□□ -0.04
Trim56Q80VI1 2610016A17Rik-202ENSMUST00000186768 689 ntBASIC14.78□□□□□ -0.04
Trim56Q80VI1 Gm8885-201ENSMUST00000189382 598 ntBASIC14.78□□□□□ -0.04
Trim56Q80VI1 Gm5441-202ENSMUST00000190132 449 ntTSL 2 BASIC14.78□□□□□ -0.04
Trim56Q80VI1 Gm38241-201ENSMUST00000192641 898 ntBASIC14.78□□□□□ -0.04
Trim56Q80VI1 Ube2a-202ENSMUST00000200835 911 ntTSL 5 BASIC14.78□□□□□ -0.04
Trim56Q80VI1 Ube2a-209ENSMUST00000202991 715 ntAPPRIS ALT1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Trim56Q80VI1 4930404N11Rik-201ENSMUST00000020456 691 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Trim56Q80VI1 Vmo1-201ENSMUST00000021179 672 ntAPPRIS P1 TSL 2 BASIC14.78□□□□□ -0.04
Trim56Q80VI1 Hspb2-202ENSMUST00000217159 552 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
Trim56Q80VI1 CT009486.1-201ENSMUST00000222047 661 ntTSL 3 BASIC14.78□□□□□ -0.04
Trim56Q80VI1 U2af1l4-201ENSMUST00000043273 884 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Trim56Q80VI1 Gm44292-201ENSMUST00000205194 2364 ntBASIC14.78□□□□□ -0.04
Trim56Q80VI1 Rccd1-201ENSMUST00000047362 3336 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Trim56Q80VI1 Gimap3-202ENSMUST00000204036 2145 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Trim56Q80VI1 Cacna1g-209ENSMUST00000107791 8002 ntAPPRIS ALT2 TSL 5 BASIC14.78□□□□□ -0.04
Trim56Q80VI1 Thap2-202ENSMUST00000218842 4970 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Trim56Q80VI1 Arhgap11a-203ENSMUST00000110948 4878 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
Trim56Q80VI1 Ddr1-204ENSMUST00000119825 3769 ntAPPRIS P3 TSL 1 (best) BASIC14.78□□□□□ -0.04
Trim56Q80VI1 Ggt6-201ENSMUST00000076443 1818 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Trim56Q80VI1 Ipo13-201ENSMUST00000036156 3595 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Trim56Q80VI1 Rpl9-204ENSMUST00000127874 2690 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
Trim56Q80VI1 Oxct1-205ENSMUST00000138927 1743 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
Trim56Q80VI1 Rbm39-217ENSMUST00000146297 2580 ntAPPRIS ALT1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Trim56Q80VI1 Rph3al-201ENSMUST00000021208 1690 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
Trim56Q80VI1 Micu1-204ENSMUST00000165563 2442 ntAPPRIS P3 TSL 1 (best) BASIC14.77□□□□□ -0.04
Trim56Q80VI1 Urgcp-204ENSMUST00000120306 3972 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.04
Trim56Q80VI1 Setd3-202ENSMUST00000109879 2387 ntTSL 3 BASIC14.77□□□□□ -0.04
Trim56Q80VI1 Nr2c2-202ENSMUST00000113463 2368 ntAPPRIS ALT1 TSL 1 (best) BASIC14.77□□□□□ -0.04
Trim56Q80VI1 Usp2-201ENSMUST00000034508 3867 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
Trim56Q80VI1 Adcyap1r1-201ENSMUST00000070736 3695 ntAPPRIS P4 TSL 1 (best) BASIC14.77□□□□□ -0.04
Trim56Q80VI1 Rap1gds1-202ENSMUST00000098574 3669 ntAPPRIS P3 TSL 1 (best) BASIC14.77□□□□□ -0.04
Trim56Q80VI1 Cplx1-201ENSMUST00000046892 2189 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
Trim56Q80VI1 Trim27-205ENSMUST00000221464 1400 ntTSL 5 BASIC14.77□□□□□ -0.04
Trim56Q80VI1 Irf8-201ENSMUST00000047737 2847 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
Trim56Q80VI1 4931429P17Rik-201ENSMUST00000061899 2012 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
Trim56Q80VI1 Il6ra-202ENSMUST00000197679 8639 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.04
Trim56Q80VI1 Actg2-201ENSMUST00000075161 1333 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
Trim56Q80VI1 Lins1-202ENSMUST00000077967 2647 ntAPPRIS ALT2 TSL 2 BASIC14.77□□□□□ -0.04
Trim56Q80VI1 Kif21b-201ENSMUST00000075164 9115 ntAPPRIS P1 TSL 2 BASIC14.77□□□□□ -0.04
Trim56Q80VI1 Esyt3-201ENSMUST00000042158 4483 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
Trim56Q80VI1 Prox1os-201ENSMUST00000110279 828 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
Trim56Q80VI1 Gm15547-201ENSMUST00000122152 333 ntBASIC14.77□□□□□ -0.05
Trim56Q80VI1 Gm26740-201ENSMUST00000180456 358 ntTSL 3 BASIC14.77□□□□□ -0.05
Trim56Q80VI1 Nipsnap3a-204ENSMUST00000188045 1099 ntAPPRIS P2 TSL 1 (best) BASIC14.77□□□□□ -0.05
Trim56Q80VI1 Gm2420-203ENSMUST00000202748 447 ntTSL 5 BASIC14.77□□□□□ -0.05
Trim56Q80VI1 AC125206.1-201ENSMUST00000214070 739 ntTSL 5 BASIC14.77□□□□□ -0.05
Trim56Q80VI1 Gm39318-201ENSMUST00000214606 1118 ntTSL 3 BASIC14.77□□□□□ -0.05
Trim56Q80VI1 4930562F07Rik-201ENSMUST00000028061 830 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
Trim56Q80VI1 Hspa2-202ENSMUST00000219555 2526 ntAPPRIS P1 BASIC14.77□□□□□ -0.05
Trim56Q80VI1 Fbxo41-202ENSMUST00000161078 6562 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Trim56Q80VI1 Sh3bp5l-201ENSMUST00000073128 2977 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Trim56Q80VI1 Gm37391-201ENSMUST00000194891 2318 ntBASIC14.77□□□□□ -0.05
Trim56Q80VI1 Usp10-210ENSMUST00000144458 3726 ntAPPRIS P3 TSL 1 (best) BASIC14.77□□□□□ -0.05
Trim56Q80VI1 Dnpep-202ENSMUST00000113605 1571 ntAPPRIS P3 TSL 1 (best) BASIC14.77□□□□□ -0.05
Trim56Q80VI1 Olfr288-202ENSMUST00000165379 2083 ntAPPRIS P1 TSL 2 BASIC14.77□□□□□ -0.05
Retrieved 100 of 76,532 protein–RNA pairs in 98.4 ms