Protein–RNA interactions for Protein: Q6PE01

Snrnp40, U5 small nuclear ribonucleoprotein 40 kDa protein, mousemouse

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Snrnp40Q6PE01 Pnkd-203ENSMUST00000087226 3054 ntAPPRIS ALT2 TSL 1 (best) BASIC11.04□□□□□ -0.64
Snrnp40Q6PE01 Efs-201ENSMUST00000022813 2705 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
Snrnp40Q6PE01 Daw1-201ENSMUST00000065403 1651 ntAPPRIS P1 TSL 5 BASIC11.04□□□□□ -0.64
Snrnp40Q6PE01 Gm13812-201ENSMUST00000118061 1347 ntBASIC11.04□□□□□ -0.64
Snrnp40Q6PE01 Gm13810-201ENSMUST00000118584 1347 ntBASIC11.04□□□□□ -0.64
Snrnp40Q6PE01 Crybg1-202ENSMUST00000200401 7525 ntAPPRIS ALT2 TSL 5 BASIC11.04□□□□□ -0.64
Snrnp40Q6PE01 Ubtf-209ENSMUST00000173870 2936 ntAPPRIS P3 TSL 5 BASIC11.04□□□□□ -0.64
Snrnp40Q6PE01 D6Ertd527e-204ENSMUST00000204927 2218 ntAPPRIS P3 TSL 1 (best) BASIC11.04□□□□□ -0.64
Snrnp40Q6PE01 Klf12-201ENSMUST00000097079 1856 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
Snrnp40Q6PE01 Necab1-201ENSMUST00000041606 4922 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
Snrnp40Q6PE01 Rorc-204ENSMUST00000200009 1543 ntTSL 1 (best) BASIC11.04□□□□□ -0.64
Snrnp40Q6PE01 Ube3a-216ENSMUST00000202945 3889 ntTSL 1 (best) BASIC11.04□□□□□ -0.64
Snrnp40Q6PE01 Arl11-202ENSMUST00000224727 2095 ntAPPRIS P1 BASIC11.04□□□□□ -0.64
Snrnp40Q6PE01 Axdnd1-204ENSMUST00000178036 3586 ntAPPRIS ALT2 TSL 5 BASIC11.03□□□□□ -0.64
Snrnp40Q6PE01 5330439B14Rik-201ENSMUST00000194811 1392 ntTSL 1 (best) BASIC11.03□□□□□ -0.64
Snrnp40Q6PE01 Fam57b-203ENSMUST00000205324 1915 ntTSL 1 (best) BASIC11.03□□□□□ -0.64
Snrnp40Q6PE01 Pnp2-201ENSMUST00000095925 1372 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
Snrnp40Q6PE01 Gm5847-201ENSMUST00000178959 1595 ntBASIC11.03□□□□□ -0.64
Snrnp40Q6PE01 Styxl1-201ENSMUST00000053906 1582 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
Snrnp40Q6PE01 Zdhhc7-201ENSMUST00000034280 3069 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
Snrnp40Q6PE01 Kctd20-203ENSMUST00000118762 3839 ntTSL 1 (best) BASIC11.03□□□□□ -0.64
Snrnp40Q6PE01 Tbkbp1-205ENSMUST00000118375 3288 ntAPPRIS P2 TSL 5 BASIC11.03□□□□□ -0.64
Snrnp40Q6PE01 Dysf-201ENSMUST00000081904 6660 ntAPPRIS P4 TSL 1 (best) BASIC11.03□□□□□ -0.64
Snrnp40Q6PE01 Rbms1-201ENSMUST00000028347 4436 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
Snrnp40Q6PE01 Vax2os-203ENSMUST00000155159 4063 ntTSL 1 (best) BASIC11.03□□□□□ -0.64
Snrnp40Q6PE01 Actn4-211ENSMUST00000217157 3530 ntTSL 5 BASIC11.03□□□□□ -0.64
Snrnp40Q6PE01 Amz2-203ENSMUST00000103061 1832 ntAPPRIS P2 TSL 1 (best) BASIC11.03□□□□□ -0.64
Snrnp40Q6PE01 Cyth1-204ENSMUST00000106305 3179 ntAPPRIS ALT1 TSL 1 (best) BASIC11.03□□□□□ -0.64
Snrnp40Q6PE01 Zkscan4-201ENSMUST00000062609 2400 ntAPPRIS P1 TSL 2 BASIC11.03□□□□□ -0.64
Snrnp40Q6PE01 Rsbn1-201ENSMUST00000051139 4762 ntAPPRIS P2 TSL 1 (best) BASIC11.03□□□□□ -0.64
Snrnp40Q6PE01 Mdk-ps1-201ENSMUST00000119782 321 ntBASIC11.03□□□□□ -0.64
Snrnp40Q6PE01 5730416F02Rik-201ENSMUST00000120648 812 ntBASIC11.03□□□□□ -0.64
Snrnp40Q6PE01 Gm12196-201ENSMUST00000120954 262 ntBASIC11.03□□□□□ -0.64
Snrnp40Q6PE01 Gm14460-201ENSMUST00000121511 639 ntBASIC11.03□□□□□ -0.64
Snrnp40Q6PE01 U2af1l4-234ENSMUST00000171850 564 ntTSL 5 BASIC11.03□□□□□ -0.64
Snrnp40Q6PE01 Plac9a-202ENSMUST00000183431 536 ntTSL 3 BASIC11.03□□□□□ -0.64
Snrnp40Q6PE01 Plac9b-204ENSMUST00000184675 536 ntTSL 3 BASIC11.03□□□□□ -0.64
Snrnp40Q6PE01 Gm9540-201ENSMUST00000188230 478 ntBASIC11.03□□□□□ -0.64
Snrnp40Q6PE01 Gm18304-201ENSMUST00000189162 546 ntBASIC11.03□□□□□ -0.64
Snrnp40Q6PE01 Gm10752-201ENSMUST00000218348 729 ntBASIC11.03□□□□□ -0.64
Snrnp40Q6PE01 CT009713.8-201ENSMUST00000225448 560 ntBASIC11.03□□□□□ -0.64
Snrnp40Q6PE01 Cmtm2b-201ENSMUST00000041973 880 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
Snrnp40Q6PE01 Defb36-201ENSMUST00000058086 468 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
Snrnp40Q6PE01 Hmgb1-202ENSMUST00000093196 1092 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
Snrnp40Q6PE01 Cd37-202ENSMUST00000098461 1227 ntAPPRIS P3 TSL 1 (best) BASIC11.03□□□□□ -0.64
Snrnp40Q6PE01 Tepp-201ENSMUST00000098480 660 ntAPPRIS ALT2 TSL 1 (best) BASIC11.03□□□□□ -0.64
Snrnp40Q6PE01 Dnajb12-203ENSMUST00000142819 1495 ntAPPRIS P2 TSL 1 (best) BASIC11.03□□□□□ -0.64
Snrnp40Q6PE01 Etv1-211ENSMUST00000162563 1865 ntAPPRIS P1 TSL 5 BASIC11.03□□□□□ -0.64
Snrnp40Q6PE01 Klk7-201ENSMUST00000032955 1895 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
Snrnp40Q6PE01 Lrriq4-201ENSMUST00000108265 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC11.03□□□□□ -0.64
Snrnp40Q6PE01 Pglyrp2-202ENSMUST00000170392 2068 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
Snrnp40Q6PE01 Dnmt1-207ENSMUST00000216540 5543 ntAPPRIS ALT2 TSL 1 (best) BASIC11.03□□□□□ -0.64
Snrnp40Q6PE01 Pgbd5-203ENSMUST00000136892 1739 ntAPPRIS P2 TSL 5 BASIC11.03□□□□□ -0.64
Snrnp40Q6PE01 Pdlim5-208ENSMUST00000196220 1725 ntAPPRIS ALT2 TSL 1 (best) BASIC11.03□□□□□ -0.64
Snrnp40Q6PE01 Ccser2-202ENSMUST00000090024 7509 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
Snrnp40Q6PE01 Gm16853-201ENSMUST00000181812 1986 ntTSL 1 (best) BASIC11.03□□□□□ -0.64
Snrnp40Q6PE01 Gpat2-201ENSMUST00000062211 2628 ntAPPRIS P1 TSL 5 BASIC11.03□□□□□ -0.64
Snrnp40Q6PE01 Shmt2-206ENSMUST00000219239 2238 ntAPPRIS ALT1 TSL 1 (best) BASIC11.03□□□□□ -0.64
Snrnp40Q6PE01 Apol8-202ENSMUST00000089450 2498 ntAPPRIS ALT2 TSL 5 BASIC11.02□□□□□ -0.64
Snrnp40Q6PE01 Scfd2-203ENSMUST00000113542 2279 ntTSL 1 (best) BASIC11.02□□□□□ -0.64
Snrnp40Q6PE01 Caskin2-201ENSMUST00000041684 4929 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.64
Snrnp40Q6PE01 Usp19-204ENSMUST00000178075 4512 ntAPPRIS ALT2 TSL 1 (best) BASIC11.02□□□□□ -0.64
Snrnp40Q6PE01 Usp19-202ENSMUST00000085044 4520 ntAPPRIS ALT2 TSL 1 (best) BASIC11.02□□□□□ -0.64
Snrnp40Q6PE01 Phka1-203ENSMUST00000113611 6064 ntAPPRIS ALT2 TSL 5 BASIC11.02□□□□□ -0.64
Snrnp40Q6PE01 Phka1-205ENSMUST00000120270 6064 ntAPPRIS ALT2 TSL 5 BASIC11.02□□□□□ -0.64
Snrnp40Q6PE01 H2-T10-202ENSMUST00000174382 1699 ntTSL 1 (best) BASIC11.02□□□□□ -0.64
Snrnp40Q6PE01 C230004F18Rik-203ENSMUST00000137153 2138 ntTSL 1 (best) BASIC11.02□□□□□ -0.64
Snrnp40Q6PE01 Nfatc2-204ENSMUST00000109184 6828 ntAPPRIS ALT2 TSL 1 (best) BASIC11.02□□□□□ -0.64
Snrnp40Q6PE01 Fam114a2-201ENSMUST00000020831 2557 ntAPPRIS P3 TSL 1 (best) BASIC11.02□□□□□ -0.65
Snrnp40Q6PE01 Txnrd3-201ENSMUST00000000828 2836 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
Snrnp40Q6PE01 Mdm4-201ENSMUST00000067398 1914 ntAPPRIS ALT1 TSL 1 (best) BASIC11.02□□□□□ -0.65
Snrnp40Q6PE01 Srsf5-202ENSMUST00000110351 1498 ntAPPRIS ALT2 TSL 1 (best) BASIC11.02□□□□□ -0.65
Snrnp40Q6PE01 Henmt1-205ENSMUST00000196533 1491 ntTSL 1 (best) BASIC11.02□□□□□ -0.65
Snrnp40Q6PE01 Lztr1-201ENSMUST00000023444 3112 ntAPPRIS P2 TSL 1 (best) BASIC11.02□□□□□ -0.65
Snrnp40Q6PE01 Ppil6-201ENSMUST00000105507 1068 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
Snrnp40Q6PE01 S100a16-206ENSMUST00000107335 926 ntAPPRIS P1 TSL 5 BASIC11.02□□□□□ -0.65
Snrnp40Q6PE01 Il15ra-204ENSMUST00000114832 468 ntTSL 5 BASIC11.02□□□□□ -0.65
Snrnp40Q6PE01 Rps2-ps4-201ENSMUST00000121977 633 ntBASIC11.02□□□□□ -0.65
Snrnp40Q6PE01 Gm15972-201ENSMUST00000132571 418 ntTSL 2 BASIC11.02□□□□□ -0.65
Snrnp40Q6PE01 Aamdc-213ENSMUST00000154853 883 ntTSL 1 (best) BASIC11.02□□□□□ -0.65
Snrnp40Q6PE01 Gm5778-201ENSMUST00000171003 1072 ntBASIC11.02□□□□□ -0.65
Snrnp40Q6PE01 H2-Q3-201ENSMUST00000172583 608 ntBASIC11.02□□□□□ -0.65
Snrnp40Q6PE01 H2-Bl-202ENSMUST00000183560 316 ntTSL 1 (best) BASIC11.02□□□□□ -0.65
Snrnp40Q6PE01 Gm8365-201ENSMUST00000197334 648 ntBASIC11.02□□□□□ -0.65
Snrnp40Q6PE01 Gm4482-201ENSMUST00000200876 742 ntBASIC11.02□□□□□ -0.65
Snrnp40Q6PE01 Gm7600-201ENSMUST00000209657 785 ntBASIC11.02□□□□□ -0.65
Snrnp40Q6PE01 AC153830.1-201ENSMUST00000218522 594 ntTSL 5 BASIC11.02□□□□□ -0.65
Snrnp40Q6PE01 Nceh1-202ENSMUST00000091284 830 ntTSL 1 (best) BASIC11.02□□□□□ -0.65
Snrnp40Q6PE01 Rbbp5-206ENSMUST00000190825 2456 ntAPPRIS ALT1 TSL 1 (best) BASIC11.02□□□□□ -0.65
Snrnp40Q6PE01 Prr18-201ENSMUST00000069742 3407 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
Snrnp40Q6PE01 Hadhb-202ENSMUST00000114783 2045 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
Snrnp40Q6PE01 Nmral1-203ENSMUST00000115851 1306 ntTSL 1 (best) BASIC11.02□□□□□ -0.65
Snrnp40Q6PE01 Susd3-201ENSMUST00000021816 1317 ntAPPRIS ALT2 TSL 1 (best) BASIC11.02□□□□□ -0.65
Snrnp40Q6PE01 Grin1-201ENSMUST00000028335 4238 ntTSL 1 (best) BASIC11.02□□□□□ -0.65
Snrnp40Q6PE01 Olfr1156-203ENSMUST00000216726 3271 ntAPPRIS P1 TSL 5 BASIC11.02□□□□□ -0.65
Snrnp40Q6PE01 Gm4297-201ENSMUST00000119285 2579 ntAPPRIS P1 TSL 5 BASIC11.02□□□□□ -0.65
Snrnp40Q6PE01 Islr2-201ENSMUST00000114144 3880 ntAPPRIS P3 TSL 2 BASIC11.02□□□□□ -0.65
Snrnp40Q6PE01 Igsf8-204ENSMUST00000139528 2866 ntTSL 2 BASIC11.02□□□□□ -0.65
Snrnp40Q6PE01 Chp1-201ENSMUST00000014221 2609 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
Snrnp40Q6PE01 Anxa11-201ENSMUST00000022416 2394 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
Retrieved 100 of 76,532 protein–RNA pairs in 46.9 ms