Protein–RNA interactions for Protein: P63158

Hmgb1, High mobility group protein B1, mousemouse

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb1P63158 Hspa4l-208ENSMUST00000204702 9479 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Hmgb1P63158 Ifi35-201ENSMUST00000010502 1362 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Hmgb1P63158 Cacna1c-201ENSMUST00000075591 7584 ntAPPRIS ALT2 TSL 1 (best) BASIC13.86□□□□□ -0.19
Hmgb1P63158 Rnaseh2a-210ENSMUST00000147812 1532 ntAPPRIS P1 TSL 5 BASIC13.86□□□□□ -0.19
Hmgb1P63158 Lmln-201ENSMUST00000023497 6147 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Hmgb1P63158 Pianp-206ENSMUST00000162000 2396 ntAPPRIS ALT2 TSL 5 BASIC13.86□□□□□ -0.19
Hmgb1P63158 Gsdme-201ENSMUST00000031845 2502 ntAPPRIS P2 TSL 1 (best) BASIC13.86□□□□□ -0.19
Hmgb1P63158 Cpped1-202ENSMUST00000096272 2663 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Hmgb1P63158 Sh3kbp1-206ENSMUST00000112456 7317 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Hmgb1P63158 Arl13b-201ENSMUST00000089289 3528 ntAPPRIS P1 TSL 5 BASIC13.86□□□□□ -0.19
Hmgb1P63158 Rps8-201ENSMUST00000102696 860 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Hmgb1P63158 Blvrb-202ENSMUST00000108357 782 ntTSL 2 BASIC13.86□□□□□ -0.19
Hmgb1P63158 D930015M05Rik-201ENSMUST00000126002 1190 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
Hmgb1P63158 Xrcc2-204ENSMUST00000134972 464 ntTSL 3 BASIC13.86□□□□□ -0.19
Hmgb1P63158 Gm16136-203ENSMUST00000162520 1121 ntTSL 2 BASIC13.86□□□□□ -0.19
Hmgb1P63158 Gm4271-201ENSMUST00000174444 973 ntBASIC13.86□□□□□ -0.19
Hmgb1P63158 Gm43597-201ENSMUST00000201650 1057 ntTSL 3 BASIC13.86□□□□□ -0.19
Hmgb1P63158 Gm29705-201ENSMUST00000212598 474 ntBASIC13.86□□□□□ -0.19
Hmgb1P63158 Gm32926-201ENSMUST00000214043 681 ntTSL 3 BASIC13.86□□□□□ -0.19
Hmgb1P63158 Olfr464-204ENSMUST00000216461 2112 ntAPPRIS P1 TSL 5 BASIC13.86□□□□□ -0.19
Hmgb1P63158 H2-Oa-201ENSMUST00000025192 1088 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Hmgb1P63158 Pex11b-207ENSMUST00000165842 1562 ntTSL 2 BASIC13.86□□□□□ -0.19
Hmgb1P63158 Runx1-201ENSMUST00000023673 5861 ntAPPRIS ALT2 TSL 1 (best) BASIC13.86□□□□□ -0.19
Hmgb1P63158 Tekt3-201ENSMUST00000035732 1748 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Hmgb1P63158 Lrriq1-203ENSMUST00000166240 5232 ntAPPRIS P1 TSL 5 BASIC13.86□□□□□ -0.19
Hmgb1P63158 Podn-202ENSMUST00000106708 2947 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Hmgb1P63158 Lvrn-201ENSMUST00000025358 3219 ntAPPRIS P1 TSL 5 BASIC13.86□□□□□ -0.19
Hmgb1P63158 Gm42941-201ENSMUST00000200347 1321 ntBASIC13.86□□□□□ -0.19
Hmgb1P63158 Gm15897-201ENSMUST00000117770 1486 ntBASIC13.86□□□□□ -0.19
Hmgb1P63158 Aqp8-201ENSMUST00000033023 1487 ntAPPRIS ALT2 TSL 1 (best) BASIC13.86□□□□□ -0.19
Hmgb1P63158 AC169511.2-201ENSMUST00000226674 2063 ntBASIC13.86□□□□□ -0.19
Hmgb1P63158 Asxl1-205ENSMUST00000227428 6981 ntAPPRIS ALT2 BASIC13.86□□□□□ -0.19
Hmgb1P63158 Lamc3-201ENSMUST00000028187 5871 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Hmgb1P63158 Cuzd1-201ENSMUST00000046611 2256 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Hmgb1P63158 Jarid2-201ENSMUST00000044608 5019 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Hmgb1P63158 Bdnf-205ENSMUST00000111045 3973 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Hmgb1P63158 Ocrl-203ENSMUST00000115020 3210 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
Hmgb1P63158 Otop1-201ENSMUST00000063136 3106 ntAPPRIS ALT2 TSL 5 BASIC13.85□□□□□ -0.19
Hmgb1P63158 Madd-209ENSMUST00000111371 5816 ntAPPRIS ALT2 TSL 2 BASIC13.85□□□□□ -0.19
Hmgb1P63158 Madd-210ENSMUST00000111372 5813 ntAPPRIS ALT2 TSL 2 BASIC13.85□□□□□ -0.19
Hmgb1P63158 Slc25a36-202ENSMUST00000085206 5227 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Hmgb1P63158 Gm12384-201ENSMUST00000119228 919 ntBASIC13.85□□□□□ -0.19
Hmgb1P63158 Gm5863-201ENSMUST00000121760 1008 ntBASIC13.85□□□□□ -0.19
Hmgb1P63158 Gm16191-201ENSMUST00000141445 520 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
Hmgb1P63158 Gm13066-201ENSMUST00000145263 884 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
Hmgb1P63158 9130410C08Rik-201ENSMUST00000155499 1088 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
Hmgb1P63158 U2af1l4-206ENSMUST00000163654 781 ntTSL 2 BASIC13.85□□□□□ -0.19
Hmgb1P63158 U2af1l4-221ENSMUST00000167361 860 ntTSL 2 BASIC13.85□□□□□ -0.19
Hmgb1P63158 Gm26602-201ENSMUST00000181321 285 ntAPPRIS P1 BASIC13.85□□□□□ -0.19
Hmgb1P63158 Mhrt-201ENSMUST00000181782 828 ntTSL 2 BASIC13.85□□□□□ -0.19
Hmgb1P63158 Zfp709-202ENSMUST00000188374 717 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
Hmgb1P63158 Gm7067-201ENSMUST00000207698 1249 ntBASIC13.85□□□□□ -0.19
Hmgb1P63158 Mymx-204ENSMUST00000208801 437 ntAPPRIS ALT2 TSL 2 BASIC13.85□□□□□ -0.19
Hmgb1P63158 4933405L10Rik-202ENSMUST00000211852 1097 ntAPPRIS ALT2 TSL 1 (best) BASIC13.85□□□□□ -0.19
Hmgb1P63158 AC165260.3-202ENSMUST00000224550 1031 ntBASIC13.85□□□□□ -0.19
Hmgb1P63158 Fam162a-201ENSMUST00000004057 635 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Hmgb1P63158 A730020E08Rik-201ENSMUST00000180421 3387 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
Hmgb1P63158 Gm20687-203ENSMUST00000185121 4242 ntTSL 2 BASIC13.85□□□□□ -0.19
Hmgb1P63158 Ttc17-202ENSMUST00000094801 3408 ntTSL 5 BASIC13.85□□□□□ -0.19
Hmgb1P63158 Sema6d-206ENSMUST00000103239 6225 ntAPPRIS P4 TSL 5 BASIC13.85□□□□□ -0.19
Hmgb1P63158 Dnm1-202ENSMUST00000091089 3764 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
Hmgb1P63158 Atg7-210ENSMUST00000182793 2459 ntAPPRIS P3 TSL 1 (best) BASIC13.85□□□□□ -0.19
Hmgb1P63158 Tsku-207ENSMUST00000206414 2310 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Hmgb1P63158 Ppargc1b-202ENSMUST00000075299 3656 ntAPPRIS P2 TSL 1 (best) BASIC13.85□□□□□ -0.19
Hmgb1P63158 Ubtf-203ENSMUST00000107115 3199 ntAPPRIS ALT2 TSL 5 BASIC13.85□□□□□ -0.19
Hmgb1P63158 Gm20052-201ENSMUST00000200831 1525 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
Hmgb1P63158 Nin-204ENSMUST00000169074 6636 ntAPPRIS ALT2 TSL 1 (best) BASIC13.85□□□□□ -0.19
Hmgb1P63158 Gm7049-201ENSMUST00000223520 1712 ntBASIC13.84□□□□□ -0.19
Hmgb1P63158 Sdad1-201ENSMUST00000031364 5020 ntAPPRIS P2 TSL 1 (best) BASIC13.84□□□□□ -0.19
Hmgb1P63158 Arhgef10l-202ENSMUST00000069623 4531 ntAPPRIS ALT2 TSL 1 (best) BASIC13.84□□□□□ -0.19
Hmgb1P63158 AC091764.2-201ENSMUST00000218190 1590 ntTSL 5 BASIC13.84□□□□□ -0.19
Hmgb1P63158 Bmp7-201ENSMUST00000009143 3670 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Hmgb1P63158 Lzts3-201ENSMUST00000045761 4201 ntAPPRIS P3 TSL 5 BASIC13.84□□□□□ -0.19
Hmgb1P63158 Aamp-202ENSMUST00000178235 1756 ntAPPRIS ALT1 TSL 5 BASIC13.84□□□□□ -0.19
Hmgb1P63158 Col14a1-201ENSMUST00000023053 6457 ntAPPRIS ALT1 TSL 5 BASIC13.84□□□□□ -0.19
Hmgb1P63158 Phrf1-202ENSMUST00000122143 4864 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
Hmgb1P63158 Gm27177-202ENSMUST00000183514 2703 ntBASIC13.84□□□□□ -0.19
Hmgb1P63158 Trmt1l-201ENSMUST00000065625 2749 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Hmgb1P63158 Gm14064-201ENSMUST00000134833 727 ntTSL 3 BASIC13.84□□□□□ -0.19
Hmgb1P63158 1700030C14Rik-201ENSMUST00000139912 756 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
Hmgb1P63158 Gm24644-201ENSMUST00000157114 139 ntBASIC13.84□□□□□ -0.19
Hmgb1P63158 Gm17232-201ENSMUST00000164515 453 ntTSL 2 BASIC13.84□□□□□ -0.19
Hmgb1P63158 6430590A07Rik-201ENSMUST00000181813 1032 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
Hmgb1P63158 Gm28411-201ENSMUST00000189864 341 ntTSL 3 BASIC13.84□□□□□ -0.19
Hmgb1P63158 Gm9794-201ENSMUST00000202370 423 ntBASIC13.84□□□□□ -0.19
Hmgb1P63158 Aprt-203ENSMUST00000211823 590 ntTSL 3 BASIC13.84□□□□□ -0.19
Hmgb1P63158 Cript-201ENSMUST00000024959 1184 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Hmgb1P63158 Mrps17-201ENSMUST00000042191 832 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Hmgb1P63158 Cyb5d1-201ENSMUST00000051620 753 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Hmgb1P63158 Tnnt3-201ENSMUST00000074187 1007 ntAPPRIS P3 TSL 1 (best) BASIC13.84□□□□□ -0.19
Hmgb1P63158 Gm24526-201ENSMUST00000082921 158 ntBASIC13.84□□□□□ -0.19
Hmgb1P63158 Ddx10-201ENSMUST00000065630 3128 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Hmgb1P63158 Zc3hc1-210ENSMUST00000152391 1673 ntTSL 5 BASIC13.84□□□□□ -0.19
Hmgb1P63158 Ifi47-204ENSMUST00000213728 1678 ntAPPRIS P1 TSL 5 BASIC13.84□□□□□ -0.19
Hmgb1P63158 Dip2a-202ENSMUST00000105417 6383 ntAPPRIS ALT2 TSL 5 BASIC13.84□□□□□ -0.19
Hmgb1P63158 Sec14l2-201ENSMUST00000003681 2631 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Hmgb1P63158 Pik3r6-202ENSMUST00000102613 3225 ntAPPRIS P3 TSL 1 (best) BASIC13.84□□□□□ -0.19
Hmgb1P63158 Man1a2-201ENSMUST00000008907 7969 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Hmgb1P63158 Tmem201-202ENSMUST00000103208 3620 ntAPPRIS P3 TSL 1 (best) BASIC13.84□□□□□ -0.19
Hmgb1P63158 Trpc2-201ENSMUST00000124189 2874 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Retrieved 100 of 76,532 protein–RNA pairs in 42.2 ms