Protein–RNA interactions for Protein: P43241

Cdx2, Homeobox protein CDX-2, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx2P43241 Kcnj12-201ENSMUST00000041944 2459 ntAPPRIS ALT2 TSL 1 (best) BASIC11.91□□□□□ -0.5
Cdx2P43241 Cd300ld2-202ENSMUST00000106578 918 ntAPPRIS P1 TSL 5 BASIC11.91□□□□□ -0.5
Cdx2P43241 Insrr-202ENSMUST00000107582 4694 ntAPPRIS P1 TSL 5 BASIC11.91□□□□□ -0.5
Cdx2P43241 Il15ra-204ENSMUST00000114832 468 ntTSL 5 BASIC11.91□□□□□ -0.5
Cdx2P43241 Gm12501-201ENSMUST00000119163 529 ntBASIC11.91□□□□□ -0.5
Cdx2P43241 Cspp1-204ENSMUST00000119714 1268 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
Cdx2P43241 Mdk-ps1-201ENSMUST00000119782 321 ntBASIC11.91□□□□□ -0.5
Cdx2P43241 Gm11667-201ENSMUST00000119828 486 ntBASIC11.91□□□□□ -0.5
Cdx2P43241 4930595D18Rik-201ENSMUST00000121608 818 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Cdx2P43241 Mocs2-203ENSMUST00000164737 745 ntTSL 3 BASIC11.91□□□□□ -0.5
Cdx2P43241 H2-Bl-202ENSMUST00000183560 316 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
Cdx2P43241 Gm27184-201ENSMUST00000185095 607 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
Cdx2P43241 Gm37246-201ENSMUST00000192665 835 ntBASIC11.91□□□□□ -0.5
Cdx2P43241 Gm34728-201ENSMUST00000201510 414 ntTSL 3 BASIC11.91□□□□□ -0.5
Cdx2P43241 3300002P13Rik-201ENSMUST00000204020 1092 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
Cdx2P43241 Gm44551-201ENSMUST00000208804 171 ntBASIC11.91□□□□□ -0.5
Cdx2P43241 Gm1821-202ENSMUST00000227415 750 ntBASIC11.91□□□□□ -0.5
Cdx2P43241 AC133602.1-201ENSMUST00000227510 509 ntBASIC11.91□□□□□ -0.5
Cdx2P43241 Olfr462-201ENSMUST00000049743 936 ntAPPRIS P1 BASIC11.91□□□□□ -0.5
Cdx2P43241 Cthrc1-201ENSMUST00000067072 1166 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Cdx2P43241 Lyz1-201ENSMUST00000092162 1263 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Cdx2P43241 Lrrc57-203ENSMUST00000102498 1901 ntAPPRIS P1 TSL 5 BASIC11.91□□□□□ -0.5
Cdx2P43241 B3gnt3-201ENSMUST00000034260 3055 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Cdx2P43241 Adcyap1r1-206ENSMUST00000167234 1575 ntAPPRIS ALT2 TSL 5 BASIC11.91□□□□□ -0.5
Cdx2P43241 Gm36745-201ENSMUST00000213455 1594 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
Cdx2P43241 Qsox1-202ENSMUST00000111764 2722 ntAPPRIS ALT2 TSL 1 (best) BASIC11.91□□□□□ -0.5
Cdx2P43241 Hoxd3os1-202ENSMUST00000139005 1701 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
Cdx2P43241 Sema3f-204ENSMUST00000192727 2383 ntAPPRIS ALT2 TSL 1 (best) BASIC11.91□□□□□ -0.5
Cdx2P43241 Hp1bp3-204ENSMUST00000105826 3348 ntAPPRIS ALT2 TSL 5 BASIC11.91□□□□□ -0.5
Cdx2P43241 Hao1-201ENSMUST00000028704 2045 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Cdx2P43241 Gm45871-202ENSMUST00000209969 1368 ntTSL 5 BASIC11.91□□□□□ -0.5
Cdx2P43241 Sbk1-201ENSMUST00000056028 4109 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Cdx2P43241 Rorc-204ENSMUST00000200009 1543 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
Cdx2P43241 Ramp1-201ENSMUST00000097648 2325 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Cdx2P43241 March7-203ENSMUST00000102748 3594 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Cdx2P43241 Oxr1-203ENSMUST00000090096 4515 ntTSL 5 BASIC11.9□□□□□ -0.5
Cdx2P43241 Clec18a-201ENSMUST00000039597 1998 ntAPPRIS P5 TSL 5 BASIC11.9□□□□□ -0.5
Cdx2P43241 Zfp429-202ENSMUST00000181071 2117 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
Cdx2P43241 Gm13812-201ENSMUST00000118061 1347 ntBASIC11.9□□□□□ -0.5
Cdx2P43241 Gm13810-201ENSMUST00000118584 1347 ntBASIC11.9□□□□□ -0.5
Cdx2P43241 Tfap2a-202ENSMUST00000110193 2863 ntAPPRIS P3 TSL 1 (best) BASIC11.9□□□□□ -0.5
Cdx2P43241 Dnajb12-203ENSMUST00000142819 1495 ntAPPRIS P2 TSL 1 (best) BASIC11.9□□□□□ -0.5
Cdx2P43241 Henmt1-205ENSMUST00000196533 1491 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
Cdx2P43241 Lnx1-209ENSMUST00000153543 2208 ntTSL 5 BASIC11.9□□□□□ -0.5
Cdx2P43241 Gm24934-201ENSMUST00000103764 111 ntBASIC11.9□□□□□ -0.5
Cdx2P43241 Med8-204ENSMUST00000106384 1743 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
Cdx2P43241 Tmed5-203ENSMUST00000117759 482 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
Cdx2P43241 Ldha-ps2-201ENSMUST00000118722 1057 ntBASIC11.9□□□□□ -0.5
Cdx2P43241 Gm11941-201ENSMUST00000119904 610 ntBASIC11.9□□□□□ -0.5
Cdx2P43241 Sec11a-204ENSMUST00000120285 875 ntTSL 3 BASIC11.9□□□□□ -0.5
Cdx2P43241 5730416F02Rik-201ENSMUST00000120648 812 ntBASIC11.9□□□□□ -0.5
Cdx2P43241 Ahcyl2-205ENSMUST00000125911 2039 ntTSL 5 BASIC11.9□□□□□ -0.5
Cdx2P43241 Gm25881-201ENSMUST00000157783 103 ntBASIC11.9□□□□□ -0.5
Cdx2P43241 1810008B01Rik-201ENSMUST00000162325 829 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
Cdx2P43241 Higd1c-201ENSMUST00000175683 507 ntAPPRIS P1 TSL 3 BASIC11.9□□□□□ -0.5
Cdx2P43241 7530416G11Rik-201ENSMUST00000178942 1161 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Cdx2P43241 Mir7677-201ENSMUST00000184226 67 ntBASIC11.9□□□□□ -0.5
Cdx2P43241 Gm28778-201ENSMUST00000190734 785 ntAPPRIS P1 TSL 3 BASIC11.9□□□□□ -0.5
Cdx2P43241 Gm8285-201ENSMUST00000208293 759 ntBASIC11.9□□□□□ -0.5
Cdx2P43241 AC166992.1-201ENSMUST00000216356 565 ntBASIC11.9□□□□□ -0.5
Cdx2P43241 Gm270-201ENSMUST00000223010 976 ntBASIC11.9□□□□□ -0.5
Cdx2P43241 Prr13-201ENSMUST00000023810 1224 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Cdx2P43241 Lins1-202ENSMUST00000077967 2647 ntAPPRIS ALT2 TSL 2 BASIC11.9□□□□□ -0.5
Cdx2P43241 Rpl17-201ENSMUST00000079716 775 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Cdx2P43241 Gm10179-201ENSMUST00000086233 688 ntBASIC11.9□□□□□ -0.5
Cdx2P43241 Pde4dip-205ENSMUST00000168438 8264 ntAPPRIS ALT2 TSL 1 (best) BASIC11.9□□□□□ -0.5
Cdx2P43241 Ercc5-201ENSMUST00000027214 3907 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Cdx2P43241 Gtse1-201ENSMUST00000170629 2721 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Cdx2P43241 Zbtb45-202ENSMUST00000172240 2722 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Cdx2P43241 Tsku-206ENSMUST00000179780 2404 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Cdx2P43241 Dnmt3b-208ENSMUST00000109772 4015 ntAPPRIS ALT2 TSL 1 (best) BASIC11.9□□□□□ -0.5
Cdx2P43241 Lrrc8e-201ENSMUST00000053035 3878 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Cdx2P43241 Ctbp1-212ENSMUST00000202962 3595 ntTSL 2 BASIC11.9□□□□□ -0.5
Cdx2P43241 B230206H07Rik-202ENSMUST00000134845 3269 ntTSL 5 BASIC11.9□□□□□ -0.5
Cdx2P43241 Mapk4-201ENSMUST00000091851 4594 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Cdx2P43241 Gpd2-207ENSMUST00000169687 5745 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Cdx2P43241 Gm45342-201ENSMUST00000210903 1363 ntBASIC11.9□□□□□ -0.5
Cdx2P43241 Uhrf1bp1l-201ENSMUST00000020112 6448 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Cdx2P43241 Cyp1b1-201ENSMUST00000024894 5128 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Cdx2P43241 9330162012Rik-201ENSMUST00000154919 3836 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
Cdx2P43241 Phkg1-201ENSMUST00000026617 2374 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.51
Cdx2P43241 Tle3-204ENSMUST00000159386 4527 ntAPPRIS ALT2 TSL 5 BASIC11.9□□□□□ -0.51
Cdx2P43241 Usp19-204ENSMUST00000178075 4512 ntAPPRIS ALT2 TSL 1 (best) BASIC11.9□□□□□ -0.51
Cdx2P43241 Usp19-202ENSMUST00000085044 4520 ntAPPRIS ALT2 TSL 1 (best) BASIC11.9□□□□□ -0.51
Cdx2P43241 Mdm2-201ENSMUST00000020408 3099 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.51
Cdx2P43241 Gpr45-203ENSMUST00000179766 3776 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.51
Cdx2P43241 Dnajb12-205ENSMUST00000147914 3041 ntAPPRIS ALT2 TSL 1 (best) BASIC11.89□□□□□ -0.51
Cdx2P43241 Slc11a2-201ENSMUST00000023774 3025 ntAPPRIS P3 TSL 1 (best) BASIC11.89□□□□□ -0.51
Cdx2P43241 Mfsd1-201ENSMUST00000029344 3011 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Cdx2P43241 Rgs6-209ENSMUST00000186848 1472 ntTSL 5 BASIC11.89□□□□□ -0.51
Cdx2P43241 Gm44999-201ENSMUST00000207456 1493 ntBASIC11.89□□□□□ -0.51
Cdx2P43241 Ncf4-201ENSMUST00000096357 1464 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Cdx2P43241 Rcbtb2-202ENSMUST00000110952 2176 ntAPPRIS P2 TSL 1 (best) BASIC11.89□□□□□ -0.51
Cdx2P43241 Tmem132e-202ENSMUST00000092852 4105 ntAPPRIS ALT2 TSL 2 BASIC11.89□□□□□ -0.51
Cdx2P43241 Olfr139-204ENSMUST00000214111 1311 ntAPPRIS P1 TSL 5 BASIC11.89□□□□□ -0.51
Cdx2P43241 Ace-202ENSMUST00000001964 2418 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
Cdx2P43241 Arnt-203ENSMUST00000102749 2699 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Cdx2P43241 Fam110a-203ENSMUST00000109864 1591 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Cdx2P43241 Gm5847-201ENSMUST00000178959 1595 ntBASIC11.89□□□□□ -0.51
Cdx2P43241 Map3k20-201ENSMUST00000090824 3334 ntAPPRIS P3 TSL 1 (best) BASIC11.89□□□□□ -0.51
Retrieved 100 of 76,532 protein–RNA pairs in 40.8 ms